Wall clock time and date at job start Tue Mar 31 2020 23:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38601 * 119.54861 * 2 1 4 4 C 1.38587 * 119.35056 * 180.02562 * 3 2 1 5 5 C 1.38630 * 118.48850 * 0.27422 * 4 3 2 6 6 C 1.39271 * 119.06220 * 359.44011 * 5 4 3 7 7 C 1.48164 * 119.72602 * 180.26950 * 6 5 4 8 8 O 1.21514 * 120.00048 * 0.30171 * 7 6 5 9 9 N 1.34773 * 119.99775 * 180.30204 * 7 6 5 10 10 N 1.40104 * 119.99764 * 180.02562 * 9 7 6 11 11 C 1.34781 * 119.99952 * 179.97438 * 10 9 7 12 12 O 1.21273 * 119.99845 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99704 * 180.02562 * 11 10 9 14 14 C 1.50707 * 109.46788 * 180.02562 * 13 11 10 15 15 C 1.37637 * 120.12473 * 264.99769 * 14 13 11 16 16 C 1.38613 * 120.24781 * 179.97438 * 15 14 13 17 17 C 1.38657 * 120.49974 * 0.02562 * 16 15 14 18 18 C 1.37603 * 120.25138 * 0.02562 * 17 16 15 19 19 C 1.40695 * 120.12794 * 84.72567 * 14 13 11 20 20 C 1.41399 * 120.24453 * 359.97438 * 19 14 13 21 21 H 1.08004 * 119.99841 * 333.89140 * 20 19 14 22 22 C 1.39944 * 120.00240 * 153.89940 * 20 19 14 23 23 N 1.30824 * 119.99753 * 343.70721 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 163.70559 * 22 20 19 25 25 H 1.48499 * 109.46837 * 90.00221 * 24 22 20 26 26 H 1.48500 * 109.47297 * 209.99823 * 24 22 20 27 27 H 1.48501 * 109.46997 * 330.00383 * 24 22 20 28 28 N 1.31490 * 119.55069 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47061 * 89.99732 * 1 2 3 30 30 H 1.08997 * 109.47331 * 209.99877 * 1 2 3 31 31 H 1.09001 * 109.47467 * 330.00020 * 1 2 3 32 32 H 1.08002 * 120.32807 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.75559 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.46906 * 179.72183 * 5 4 3 35 35 H 0.96997 * 120.00398 * 359.97438 * 9 7 6 36 36 H 0.97000 * 119.99849 * 0.02562 * 10 9 7 37 37 H 1.09004 * 109.47239 * 300.00084 * 13 11 10 38 38 H 1.08997 * 109.47305 * 60.00578 * 13 11 10 39 39 H 1.08002 * 119.87703 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.75015 * 180.02562 * 16 15 14 41 41 H 1.08003 * 119.87871 * 179.97438 * 17 16 15 42 42 H 1.07994 * 120.12897 * 179.97438 * 18 17 16 43 43 H 0.97001 * 120.00168 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1904 1.2057 0.0000 4 6 3.5763 1.2010 -0.0005 5 6 4.2333 -0.0197 -0.0069 6 6 3.4821 -1.1924 -0.0006 7 6 4.1692 -2.5051 -0.0012 8 8 5.3833 -2.5554 -0.0016 9 7 3.4475 -3.6434 -0.0013 10 7 4.0972 -4.8847 -0.0013 11 6 3.3756 -6.0230 -0.0009 12 8 2.1639 -5.9728 -0.0009 13 6 4.0745 -7.3581 -0.0003 14 6 3.0486 -8.4621 -0.0005 15 6 2.6539 -9.0386 1.1854 16 6 1.7101 -10.0538 1.1882 17 6 1.1536 -10.5005 -0.0006 18 6 1.5340 -9.9395 -1.1981 19 6 2.4864 -8.9035 -1.2124 20 6 2.8796 -8.3144 -2.4362 21 1 3.2541 -7.3015 -2.4522 22 6 2.7834 -9.0438 -3.6267 23 7 2.6418 -10.3437 -3.5877 24 14 2.8573 -8.1612 -5.2714 25 1 4.2685 -8.0796 -5.7264 26 1 2.0572 -8.9117 -6.2723 27 1 2.3050 -6.7907 -5.1229 28 7 2.1554 -1.1439 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6484 2.1399 -0.0004 33 1 4.1318 2.1272 -0.0001 34 1 5.3126 -0.0608 -0.0120 35 1 2.4784 -3.6033 -0.0005 36 1 5.0664 -4.9248 -0.0009 37 1 4.6983 -7.4421 -0.8903 38 1 4.6982 -7.4415 0.8897 39 1 3.0806 -8.6981 2.1173 40 1 1.4060 -10.5001 2.1234 41 1 0.4193 -11.2925 0.0132 42 1 1.0996 -10.2893 -2.1228 43 1 2.5747 -10.8493 -4.4128 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794087811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:57 Heat of formation + Delta-G solvation = -8.595513 kcal Electronic energy + Delta-G solvation = -27775.069855 eV Core-core repulsion = 23785.096260 eV Total energy + Delta-G solvation = -3989.973595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92133 -41.03997 -40.00793 -39.05777 -36.48806 -35.51112 -34.06958 -33.99221 -33.52741 -31.93780 -31.32498 -28.82526 -28.38954 -26.90490 -25.70190 -23.31450 -22.85074 -22.72298 -22.37010 -21.12899 -19.35835 -19.05783 -18.94907 -17.57823 -17.37263 -17.25364 -16.85206 -16.69365 -16.29191 -16.15921 -15.95249 -15.48125 -15.32291 -14.97525 -14.96237 -14.79710 -14.38395 -14.06189 -13.57448 -13.39492 -13.34139 -13.13354 -12.92858 -12.92236 -12.87757 -12.76689 -12.52794 -12.40238 -12.14711 -11.79862 -11.33254 -11.24096 -11.12592 -11.03091 -10.98601 -10.63124 -10.09847 -9.48539 -9.22658 -9.18728 -8.61166 -6.30830 -0.47895 0.19035 0.61852 1.03138 1.19764 1.34032 1.34240 1.44847 1.52199 1.73103 2.18262 2.65501 2.73730 2.77145 3.13625 3.56610 3.75297 3.83412 3.95349 4.04686 4.05932 4.35316 4.39345 4.41915 4.56762 4.59651 4.71440 4.74622 4.78562 4.79851 5.02738 5.04992 5.09415 5.18833 5.19393 5.36855 5.47425 5.54218 5.58993 5.63023 5.77250 6.03266 6.15631 6.21874 6.39092 6.41352 6.64620 6.73114 6.81553 6.97864 7.10113 7.29532 8.35163 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.002791 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.003261 B =10031.425924 C =10792.957870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.112 3.888 3 C -0.131 4.131 4 C -0.070 4.070 5 C -0.117 4.117 6 C 0.061 3.939 7 C 0.568 3.432 8 O -0.559 6.559 9 N -0.505 5.505 10 N -0.525 5.525 11 C 0.521 3.479 12 O -0.560 6.560 13 C -0.056 4.056 14 C -0.191 4.191 15 C -0.087 4.087 16 C -0.242 4.242 17 C -0.114 4.114 18 C -0.193 4.193 19 C 0.098 3.902 20 C -0.483 4.483 21 H 0.070 0.930 22 C 0.039 3.961 23 N -0.823 5.823 24 Si 0.967 3.033 25 H -0.256 1.256 26 H -0.266 1.266 27 H -0.271 1.271 28 N -0.491 5.491 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.183 0.817 33 H 0.185 0.815 34 H 0.153 0.847 35 H 0.438 0.562 36 H 0.438 0.562 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 23.367 5.509 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.029 4.029 3 C -0.151 4.151 4 C -0.095 4.095 5 C -0.139 4.139 6 C -0.076 4.076 7 C 0.355 3.645 8 O -0.437 6.437 9 N -0.250 5.250 10 N -0.277 5.277 11 C 0.310 3.690 12 O -0.436 6.436 13 C -0.097 4.097 14 C -0.193 4.193 15 C -0.105 4.105 16 C -0.261 4.261 17 C -0.133 4.133 18 C -0.212 4.212 19 C 0.096 3.904 20 C -0.513 4.513 21 H 0.088 0.912 22 C -0.176 4.176 23 N -0.449 5.449 24 Si 0.789 3.211 25 H -0.181 1.181 26 H -0.190 1.190 27 H -0.196 1.196 28 N -0.205 5.205 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.200 0.800 33 H 0.202 0.798 34 H 0.171 0.829 35 H 0.281 0.719 36 H 0.282 0.718 37 H 0.124 0.876 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.208 22.296 5.356 22.963 hybrid contribution 0.290 0.354 -0.933 1.039 sum 1.498 22.650 4.423 23.127 Atomic orbital electron populations 1.20864 0.86628 1.04669 1.04140 1.21911 0.98505 0.87958 0.94534 1.22698 0.95222 1.00054 0.97123 1.22102 0.94748 0.98477 0.94176 1.22261 1.02585 0.91783 0.97237 1.20541 0.90309 0.92363 1.04431 1.18393 0.86526 0.82785 0.76832 1.90761 1.13306 1.87047 1.52597 1.44856 1.10247 0.96488 1.73393 1.45233 1.09682 0.95223 1.77512 1.21749 0.87967 0.84828 0.74489 1.90695 1.15704 1.87196 1.49971 1.20234 0.97365 0.86333 1.05779 1.19428 1.03795 1.02540 0.93554 1.20762 0.97081 0.96181 0.96461 1.20732 1.04783 1.03643 0.96960 1.20968 0.99637 0.99368 0.93312 1.21308 1.01196 1.02055 0.96665 1.17718 0.89060 0.90855 0.92773 1.19612 1.39744 1.00023 0.91934 0.91220 1.26602 0.91756 0.95027 1.04208 1.69869 1.36120 1.07669 1.31260 0.85428 0.79660 0.78917 0.77096 1.18081 1.18986 1.19604 1.67318 1.08492 1.32538 1.12130 0.89466 0.91602 0.87321 0.79999 0.79822 0.82905 0.71909 0.71811 0.87591 0.85746 0.86253 0.86577 0.87605 0.88469 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.17 71.23 0.72 -0.55 16 2 C 0.11 1.91 6.78 42.69 0.29 2.20 16 3 C -0.13 -1.36 9.75 22.44 0.22 -1.14 16 4 C -0.07 -0.75 10.17 22.45 0.23 -0.52 16 5 C -0.12 -2.15 9.63 22.61 0.22 -1.94 16 6 C 0.06 1.55 6.75 41.89 0.28 1.84 16 7 C 0.57 17.34 7.93 86.88 0.69 18.02 16 8 O -0.56 -18.47 16.16 -3.76 -0.06 -18.53 16 9 N -0.50 -16.60 6.25 -175.39 -1.10 -17.69 16 10 N -0.53 -17.44 6.26 -173.53 -1.09 -18.53 16 11 C 0.52 20.60 7.56 87.66 0.66 21.27 16 12 O -0.56 -27.06 15.87 -3.01 -0.05 -27.11 16 13 C -0.06 -2.14 5.18 29.10 0.15 -1.99 16 14 C -0.19 -9.10 4.43 -19.40 -0.09 -9.19 16 15 C -0.09 -3.85 9.66 22.22 0.21 -3.63 16 16 C -0.24 -10.90 10.05 22.46 0.23 -10.68 16 17 C -0.11 -5.61 10.02 22.22 0.22 -5.38 16 18 C -0.19 -10.64 8.69 22.73 0.20 -10.44 16 19 C 0.10 5.37 5.56 -21.29 -0.12 5.26 16 20 C -0.48 -26.26 8.14 23.46 0.19 -26.07 16 21 H 0.07 3.70 6.67 -2.91 -0.02 3.68 16 22 C 0.04 2.01 5.16 85.26 0.44 2.45 16 23 N -0.82 -43.77 10.96 21.83 0.24 -43.53 16 24 Si 0.97 39.93 29.59 68.60 2.03 41.96 16 25 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 26 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 N -0.49 -12.12 9.45 -173.09 -1.64 -13.75 16 29 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 0.59 8.08 -2.39 -0.02 0.57 16 32 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 33 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.15 2.62 7.64 -2.91 -0.02 2.59 16 35 H 0.44 15.06 7.33 -213.32 -1.56 13.49 16 36 H 0.44 12.46 8.00 -213.32 -1.71 10.75 16 37 H 0.11 3.97 7.08 -2.39 -0.02 3.95 16 38 H 0.12 3.63 8.05 -2.39 -0.02 3.61 16 39 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 42 H 0.10 5.62 6.20 -2.91 -0.02 5.60 16 43 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 Total: -1.00 -74.88 375.41 0.90 -73.98 By element: Atomic # 1 Polarization: 45.89 SS G_CDS: -2.19 Total: 43.70 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.75 Total: -20.49 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -3.58 Total: -93.51 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -0.11 Total: -45.64 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -74.88 0.90 -73.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794087811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.384 kcal (2) G-P(sol) polarization free energy of solvation -74.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds