Wall clock time and date at job start Tue Mar 31 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48502 * 109.47312 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47001 * 120.00148 * 3 2 1 6 6 H 1.48497 * 109.47252 * 239.99651 * 3 2 1 7 7 C 1.39940 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00116 * 154.85133 * 7 2 1 9 9 C 1.41399 * 119.99922 * 334.84750 * 7 2 1 10 10 C 1.40731 * 120.24677 * 334.83251 * 9 7 2 11 11 C 1.37601 * 119.75059 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.24267 * 0.02676 * 11 10 9 13 13 C 1.38613 * 120.50391 * 359.97438 * 12 11 10 14 14 C 1.37641 * 120.24920 * 359.67506 * 13 12 11 15 15 C 1.50698 * 120.12914 * 180.32383 * 14 13 12 16 16 C 1.50700 * 109.46795 * 265.30211 * 15 14 13 17 17 O 1.21280 * 120.00100 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00262 * 179.97438 * 16 15 14 19 19 N 1.40097 * 120.00479 * 179.97438 * 18 16 15 20 20 C 1.34772 * 120.00084 * 180.02562 * 19 18 16 21 21 O 1.21595 * 120.00022 * 180.02562 * 20 19 18 22 22 N 1.34773 * 120.00272 * 0.02562 * 20 19 18 23 23 C 1.39947 * 120.00409 * 175.50330 * 22 20 19 24 24 C 1.38869 * 120.07238 * 214.85903 * 23 22 20 25 25 C 1.38109 * 119.92555 * 179.74593 * 24 23 22 26 26 C 1.38280 * 120.07545 * 0.52656 * 25 24 23 27 27 C 1.38282 * 120.13813 * 359.74584 * 26 25 24 28 28 C 1.38111 * 120.06819 * 359.97438 * 27 26 25 29 29 H 0.96997 * 120.00574 * 174.67884 * 1 2 3 30 30 H 1.08011 * 120.12483 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.87648 * 180.02562 * 11 10 9 32 32 H 1.08004 * 119.74561 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.87204 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.47210 * 25.29752 * 15 14 13 35 35 H 1.09001 * 109.47095 * 145.30399 * 15 14 13 36 36 H 0.97002 * 119.99866 * 0.02562 * 18 16 15 37 37 H 0.97002 * 119.99654 * 0.02562 * 19 18 16 38 38 H 0.96999 * 119.99901 * 355.50600 * 22 20 19 39 39 H 1.07998 * 120.03107 * 0.02562 * 24 23 22 40 40 H 1.08007 * 119.96244 * 180.26939 * 25 24 23 41 41 H 1.07998 * 119.92910 * 179.72477 * 26 25 24 42 42 H 1.07998 * 119.96310 * 179.97438 * 27 26 25 43 43 H 1.08008 * 120.03594 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2772 2.7465 0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0960 1.6964 -1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0111 -1.2561 -0.3980 9 6 1.4015 -2.3786 0.5194 10 6 0.3800 -2.2777 1.4822 11 6 -0.2028 -3.4198 1.9817 12 6 0.2133 -4.6666 1.5402 13 6 1.2185 -4.7780 0.5923 14 6 1.8106 -3.6489 0.0736 15 6 2.8981 -3.7729 -0.9622 16 6 4.2436 -3.7371 -0.2845 17 8 4.3127 -3.6217 0.9208 18 7 5.3703 -3.8333 -1.0178 19 7 6.6212 -3.7995 -0.3879 20 6 7.7479 -3.8952 -1.1213 21 8 8.8336 -3.8663 -0.5745 22 7 7.6713 -4.0229 -2.4607 23 6 8.8395 -4.0276 -3.2313 24 6 8.8416 -3.4530 -4.4955 25 6 9.9976 -3.4547 -5.2512 26 6 11.1492 -4.0373 -4.7547 27 6 11.1489 -4.6152 -3.4985 28 6 9.9977 -4.6117 -2.7354 29 1 -0.4851 -0.8364 -0.0779 30 1 0.0553 -1.3075 1.8284 31 1 -0.9871 -3.3447 2.7203 32 1 -0.2494 -5.5578 1.9380 33 1 1.5349 -5.7543 0.2559 34 1 2.7853 -4.7164 -1.4963 35 1 2.8243 -2.9450 -1.6674 36 1 5.3152 -3.9252 -1.9819 37 1 6.6764 -3.7072 0.5762 38 1 6.8063 -4.1115 -2.8908 39 1 7.9414 -3.0014 -4.8854 40 1 10.0010 -3.0041 -6.2328 41 1 12.0506 -4.0412 -5.3495 42 1 12.0498 -5.0698 -3.1136 43 1 9.9979 -5.0637 -1.7545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801990615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:03 Heat of formation + Delta-G solvation = 17.953941 kcal Electronic energy + Delta-G solvation = -27793.072048 eV Core-core repulsion = 23804.249724 eV Total energy + Delta-G solvation = -3988.822325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.07566 -39.60780 -38.68350 -37.65903 -35.65976 -34.92209 -33.93844 -32.27149 -31.13894 -30.82102 -29.41635 -29.28497 -26.81327 -24.98384 -23.50825 -22.92612 -21.63256 -21.02997 -21.01747 -20.01693 -19.17130 -18.03830 -17.79060 -17.14432 -16.35842 -15.96996 -15.83865 -15.31243 -15.16088 -14.98569 -14.57249 -14.26863 -14.20908 -14.06339 -13.70287 -13.60076 -13.49201 -13.05184 -12.42740 -12.12078 -12.01132 -11.87081 -11.66771 -11.52499 -11.29591 -11.13901 -10.94017 -10.78401 -10.54744 -10.43893 -10.41447 -9.76212 -9.66133 -9.46092 -9.15147 -9.03421 -8.58336 -8.21252 -7.65733 -7.59372 -7.20550 -4.51533 1.05411 1.18752 1.79042 2.55691 2.67404 2.75792 2.80978 3.03552 3.12097 3.24246 3.33510 3.61016 3.96621 4.48479 4.57713 4.69821 4.73192 4.93456 5.05902 5.17632 5.29271 5.33537 5.48570 5.69556 5.76462 5.79127 5.97603 6.07612 6.07920 6.16595 6.25095 6.27031 6.32450 6.41671 6.51978 6.60194 6.80757 6.91843 7.11715 7.29655 7.35248 7.51527 7.62291 7.74380 7.76107 7.87712 8.09704 8.12026 8.25634 8.52780 8.68613 8.83908 10.00013 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.002626 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.413754 B =10659.505556 C =11884.749652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.041 3.959 3 Si 1.059 2.941 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.117 3.883 10 C -0.215 4.215 11 C -0.083 4.083 12 C -0.254 4.254 13 C -0.064 4.064 14 C -0.194 4.194 15 C -0.057 4.057 16 C 0.517 3.483 17 O -0.508 6.508 18 N -0.548 5.548 19 N -0.523 5.523 20 C 0.712 3.288 21 O -0.565 6.565 22 N -0.686 5.686 23 C 0.164 3.836 24 C -0.147 4.147 25 C -0.102 4.102 26 C -0.138 4.138 27 C -0.102 4.102 28 C -0.120 4.120 29 H 0.300 0.700 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.413 0.587 37 H 0.446 0.554 38 H 0.404 0.596 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.887 -6.688 -11.985 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.182 4.182 3 Si 0.883 3.117 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.090 0.910 9 C 0.114 3.886 10 C -0.235 4.235 11 C -0.102 4.102 12 C -0.273 4.273 13 C -0.082 4.082 14 C -0.196 4.196 15 C -0.098 4.098 16 C 0.305 3.695 17 O -0.378 6.378 18 N -0.304 5.304 19 N -0.277 5.277 20 C 0.412 3.588 21 O -0.438 6.438 22 N -0.335 5.335 23 C 0.069 3.931 24 C -0.167 4.167 25 C -0.120 4.120 26 C -0.157 4.157 27 C -0.121 4.121 28 C -0.140 4.140 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.254 0.746 37 H 0.292 0.708 38 H 0.240 0.760 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.415 -4.921 -10.699 18.614 hybrid contribution -0.320 -1.701 -0.242 1.747 sum 14.096 -6.622 -10.941 19.033 Atomic orbital electron populations 1.70461 1.08191 1.34359 1.28803 1.26934 0.95663 1.04205 0.91360 0.83710 0.75757 0.74144 0.78070 1.19783 1.19993 1.20212 1.20448 1.02533 0.93988 1.37373 0.90983 1.17389 0.90252 0.91751 0.89184 1.21166 1.03323 0.97070 1.01899 1.20634 0.98136 0.93219 0.98165 1.20280 1.04790 0.95886 1.06329 1.20365 0.95910 0.95766 0.96198 1.18897 1.02846 0.93674 1.04207 1.20200 0.87797 1.03202 0.98576 1.21846 0.84201 0.75103 0.88384 1.90738 1.86269 1.46481 1.14283 1.45532 0.96207 1.79715 1.08922 1.44481 0.94861 1.78432 1.09967 1.15627 0.83420 0.78422 0.81332 1.91017 1.24137 1.58401 1.70276 1.42554 1.08761 1.76800 1.05428 1.17522 0.86484 0.97849 0.91238 1.20914 0.99638 1.01614 0.94561 1.20926 0.92306 0.99169 0.99622 1.21150 0.98354 0.99940 0.96290 1.21081 0.97829 0.99056 0.94149 1.21366 0.92135 0.99300 1.01244 0.88612 0.87649 0.89269 0.89327 0.89450 0.89809 0.87934 0.74634 0.70753 0.75994 0.85588 0.85651 0.86050 0.85746 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.30 12.32 55.55 0.68 -19.61 16 2 C 0.04 0.99 4.95 -17.34 -0.09 0.91 16 3 Si 1.06 21.29 30.00 -169.99 -5.10 16.20 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.52 -12.84 8.09 -37.74 -0.31 -13.15 16 8 H 0.07 1.74 6.72 -52.49 -0.35 1.39 16 9 C 0.12 2.94 5.31 -106.82 -0.57 2.37 16 10 C -0.22 -5.43 7.93 -38.87 -0.31 -5.74 16 11 C -0.08 -1.91 10.02 -39.66 -0.40 -2.31 16 12 C -0.25 -5.55 10.05 -39.29 -0.39 -5.94 16 13 C -0.06 -1.37 9.66 -39.66 -0.38 -1.75 16 14 C -0.19 -4.29 4.43 -103.91 -0.46 -4.75 16 15 C -0.06 -0.96 5.18 -29.04 -0.15 -1.11 16 16 C 0.52 8.86 7.58 -10.99 -0.08 8.78 16 17 O -0.51 -11.12 15.87 5.56 0.09 -11.04 16 18 N -0.55 -6.91 6.26 31.22 0.20 -6.71 16 19 N -0.52 -7.11 6.26 27.63 0.17 -6.94 16 20 C 0.71 9.55 8.52 -86.93 -0.74 8.81 16 21 O -0.56 -9.22 14.62 5.28 0.08 -9.14 16 22 N -0.69 -7.04 5.30 -14.22 -0.08 -7.11 16 23 C 0.16 1.76 6.30 -83.68 -0.53 1.23 16 24 C -0.15 -1.29 9.97 -39.40 -0.39 -1.69 16 25 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 26 C -0.14 -1.13 10.04 -39.55 -0.40 -1.52 16 27 C -0.10 -0.96 10.04 -39.61 -0.40 -1.35 16 28 C -0.12 -1.37 8.69 -39.39 -0.34 -1.71 16 29 H 0.30 7.82 6.62 -40.82 -0.27 7.55 16 30 H 0.11 2.75 6.46 -52.48 -0.34 2.41 16 31 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 35 H 0.10 1.67 7.06 -51.93 -0.37 1.30 16 36 H 0.41 3.52 6.71 -182.60 -1.23 2.29 16 37 H 0.45 6.64 8.10 -182.60 -1.48 5.17 16 38 H 0.40 2.92 6.75 -40.82 -0.28 2.65 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.14 1.81 6.23 -52.48 -0.33 1.48 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -32.07 367.85 -11.55 -43.63 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -6.81 Total: 15.32 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -6.33 Total: -20.13 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.98 Total: -40.38 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.17 Total: -20.18 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.10 Total: 16.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.07 -11.55 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801990615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.582 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds