Wall clock time and date at job start Tue Mar 31 2020 22:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48502 * 109.47312 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47001 * 120.00148 * 3 2 1 6 6 H 1.48497 * 109.47252 * 239.99651 * 3 2 1 7 7 C 1.39940 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00116 * 154.85133 * 7 2 1 9 9 C 1.41399 * 119.99922 * 334.84750 * 7 2 1 10 10 C 1.40731 * 120.24677 * 334.83251 * 9 7 2 11 11 C 1.37601 * 119.75059 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.24267 * 0.02676 * 11 10 9 13 13 C 1.38613 * 120.50391 * 359.97438 * 12 11 10 14 14 C 1.37641 * 120.24920 * 359.67506 * 13 12 11 15 15 C 1.50698 * 120.12914 * 180.32383 * 14 13 12 16 16 C 1.50700 * 109.46795 * 265.30211 * 15 14 13 17 17 O 1.21280 * 120.00100 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00262 * 179.97438 * 16 15 14 19 19 N 1.40097 * 120.00479 * 179.97438 * 18 16 15 20 20 C 1.34772 * 120.00084 * 180.02562 * 19 18 16 21 21 O 1.21595 * 120.00022 * 180.02562 * 20 19 18 22 22 N 1.34773 * 120.00272 * 0.02562 * 20 19 18 23 23 C 1.39947 * 120.00409 * 175.50330 * 22 20 19 24 24 C 1.38869 * 120.07238 * 214.85903 * 23 22 20 25 25 C 1.38109 * 119.92555 * 179.74593 * 24 23 22 26 26 C 1.38280 * 120.07545 * 0.52656 * 25 24 23 27 27 C 1.38282 * 120.13813 * 359.74584 * 26 25 24 28 28 C 1.38111 * 120.06819 * 359.97438 * 27 26 25 29 29 H 0.96997 * 120.00574 * 174.67884 * 1 2 3 30 30 H 1.08011 * 120.12483 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.87648 * 180.02562 * 11 10 9 32 32 H 1.08004 * 119.74561 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.87204 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.47210 * 25.29752 * 15 14 13 35 35 H 1.09001 * 109.47095 * 145.30399 * 15 14 13 36 36 H 0.97002 * 119.99866 * 0.02562 * 18 16 15 37 37 H 0.97002 * 119.99654 * 0.02562 * 19 18 16 38 38 H 0.96999 * 119.99901 * 355.50600 * 22 20 19 39 39 H 1.07998 * 120.03107 * 0.02562 * 24 23 22 40 40 H 1.08007 * 119.96244 * 180.26939 * 25 24 23 41 41 H 1.07998 * 119.92910 * 179.72477 * 26 25 24 42 42 H 1.07998 * 119.96310 * 179.97438 * 27 26 25 43 43 H 1.08008 * 120.03594 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2772 2.7465 0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0960 1.6964 -1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0111 -1.2561 -0.3980 9 6 1.4015 -2.3786 0.5194 10 6 0.3800 -2.2777 1.4822 11 6 -0.2028 -3.4198 1.9817 12 6 0.2133 -4.6666 1.5402 13 6 1.2185 -4.7780 0.5923 14 6 1.8106 -3.6489 0.0736 15 6 2.8981 -3.7729 -0.9622 16 6 4.2436 -3.7371 -0.2845 17 8 4.3127 -3.6217 0.9208 18 7 5.3703 -3.8333 -1.0178 19 7 6.6212 -3.7995 -0.3879 20 6 7.7479 -3.8952 -1.1213 21 8 8.8336 -3.8663 -0.5745 22 7 7.6713 -4.0229 -2.4607 23 6 8.8395 -4.0276 -3.2313 24 6 8.8416 -3.4530 -4.4955 25 6 9.9976 -3.4547 -5.2512 26 6 11.1492 -4.0373 -4.7547 27 6 11.1489 -4.6152 -3.4985 28 6 9.9977 -4.6117 -2.7354 29 1 -0.4851 -0.8364 -0.0779 30 1 0.0553 -1.3075 1.8284 31 1 -0.9871 -3.3447 2.7203 32 1 -0.2494 -5.5578 1.9380 33 1 1.5349 -5.7543 0.2559 34 1 2.7853 -4.7164 -1.4963 35 1 2.8243 -2.9450 -1.6674 36 1 5.3152 -3.9252 -1.9819 37 1 6.6764 -3.7072 0.5762 38 1 6.8063 -4.1115 -2.8908 39 1 7.9414 -3.0014 -4.8854 40 1 10.0010 -3.0041 -6.2328 41 1 12.0506 -4.0412 -5.3495 42 1 12.0498 -5.0698 -3.1136 43 1 9.9979 -5.0637 -1.7545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801990615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:02 Heat of formation + Delta-G solvation = -1.808929 kcal Electronic energy + Delta-G solvation = -27793.929031 eV Core-core repulsion = 23804.249724 eV Total energy + Delta-G solvation = -3989.679307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09076 -40.87725 -39.68033 -39.22336 -36.91765 -35.81327 -35.73140 -33.78793 -32.12143 -31.79923 -31.08165 -30.22065 -28.34938 -26.76752 -24.35063 -23.64872 -23.03077 -22.80400 -21.95236 -21.48591 -20.31243 -19.55181 -19.05568 -18.16313 -17.24591 -17.03058 -16.99443 -16.72058 -16.54721 -16.29708 -15.93471 -15.73375 -15.36929 -15.23676 -14.95433 -14.87158 -14.27157 -14.20351 -13.85903 -13.81612 -13.55819 -13.00189 -12.96070 -12.72699 -12.61875 -12.48057 -12.24133 -12.20476 -11.99552 -11.77818 -11.48458 -11.34211 -11.21224 -11.07781 -10.83072 -9.84152 -9.62974 -9.43959 -9.41899 -9.09365 -9.04768 -6.38916 0.32081 0.48961 0.61025 1.00081 1.04433 1.46603 1.48433 1.62698 1.73637 1.76135 1.86771 2.30893 2.72506 2.90993 3.36316 3.69406 3.96778 4.03645 4.10510 4.28919 4.32510 4.34292 4.49952 4.52529 4.57281 4.59173 4.61578 4.73330 4.97406 5.09403 5.09587 5.21391 5.25234 5.33975 5.35278 5.51504 5.57187 5.61010 5.66830 5.80840 5.86121 5.99484 6.07360 6.10310 6.24710 6.30413 6.46231 6.50956 6.85987 7.03981 7.05547 7.31858 8.10656 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.002626 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.413754 B =10659.505556 C =11884.749652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.006 3.994 3 Si 1.104 2.896 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.087 3.913 10 C -0.248 4.248 11 C -0.096 4.096 12 C -0.254 4.254 13 C -0.074 4.074 14 C -0.194 4.194 15 C -0.056 4.056 16 C 0.522 3.478 17 O -0.562 6.562 18 N -0.522 5.522 19 N -0.527 5.527 20 C 0.713 3.287 21 O -0.596 6.596 22 N -0.670 5.670 23 C 0.139 3.861 24 C -0.145 4.145 25 C -0.102 4.102 26 C -0.137 4.137 27 C -0.112 4.112 28 C -0.145 4.145 29 H 0.286 0.714 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.435 0.565 37 H 0.439 0.561 38 H 0.419 0.581 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.289 -7.631 -14.871 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.211 4.211 3 Si 0.922 3.078 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.566 4.566 8 H 0.092 0.908 9 C 0.085 3.915 10 C -0.267 4.267 11 C -0.114 4.114 12 C -0.273 4.273 13 C -0.092 4.092 14 C -0.196 4.196 15 C -0.097 4.097 16 C 0.310 3.690 17 O -0.437 6.437 18 N -0.278 5.278 19 N -0.280 5.280 20 C 0.413 3.587 21 O -0.472 6.472 22 N -0.320 5.320 23 C 0.045 3.955 24 C -0.166 4.166 25 C -0.120 4.120 26 C -0.155 4.155 27 C -0.130 4.130 28 C -0.166 4.166 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.128 0.872 36 H 0.280 0.720 37 H 0.284 0.716 38 H 0.258 0.742 39 H 0.166 0.834 40 H 0.172 0.828 41 H 0.165 0.835 42 H 0.155 0.845 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.823 -5.895 -13.691 21.738 hybrid contribution -0.683 -1.596 0.616 1.842 sum 15.141 -7.490 -13.074 21.361 Atomic orbital electron populations 1.70552 1.08930 1.33381 1.31496 1.28104 0.95714 1.07062 0.90213 0.83155 0.74923 0.70873 0.78802 1.19696 1.20469 1.17474 1.20560 1.02683 0.94661 1.38718 0.90804 1.17782 0.90713 0.93435 0.89613 1.21166 1.05126 0.96873 1.03536 1.20900 0.98595 0.93302 0.98604 1.20730 1.04490 0.96235 1.05818 1.20845 0.95388 0.97273 0.95731 1.19431 1.03271 0.92731 1.04163 1.20249 0.86027 1.06067 0.97317 1.21698 0.85147 0.74481 0.87628 1.90732 1.87062 1.49320 1.16576 1.45067 0.95202 1.77826 1.09658 1.44503 0.94999 1.78657 1.09832 1.15699 0.82667 0.78143 0.82168 1.91001 1.25253 1.59754 1.71198 1.42354 1.09679 1.75867 1.04139 1.17749 0.86309 0.99192 0.92215 1.21205 1.00985 1.00818 0.93545 1.21350 0.91724 0.98341 1.00616 1.21512 0.99581 0.98683 0.95743 1.21303 0.97652 0.99338 0.94756 1.21342 0.93640 1.00726 1.00875 0.90171 0.90059 0.87619 0.86507 0.85743 0.85069 0.87167 0.71990 0.71590 0.74244 0.83357 0.82768 0.83459 0.84516 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.50 12.32 21.83 0.27 -43.23 16 2 C 0.01 0.29 4.95 85.26 0.42 0.71 16 3 Si 1.10 43.34 30.00 68.60 2.06 45.40 16 4 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 7 C -0.54 -27.29 8.09 23.46 0.19 -27.10 16 8 H 0.07 3.59 6.72 -2.91 -0.02 3.57 16 9 C 0.09 4.45 5.31 -21.29 -0.11 4.34 16 10 C -0.25 -12.96 7.93 22.73 0.18 -12.78 16 11 C -0.10 -4.44 10.02 22.22 0.22 -4.22 16 12 C -0.25 -10.69 10.05 22.46 0.23 -10.47 16 13 C -0.07 -3.00 9.66 22.22 0.21 -2.78 16 14 C -0.19 -8.35 4.43 -19.40 -0.09 -8.43 16 15 C -0.06 -1.74 5.18 29.10 0.15 -1.59 16 16 C 0.52 17.03 7.58 87.66 0.66 17.69 16 17 O -0.56 -24.53 15.87 -3.03 -0.05 -24.58 16 18 N -0.52 -12.04 6.26 -173.53 -1.09 -13.13 16 19 N -0.53 -13.91 6.26 -184.75 -1.16 -15.07 16 20 C 0.71 18.72 8.52 179.06 1.53 20.25 16 21 O -0.60 -19.83 14.62 -4.02 -0.06 -19.89 16 22 N -0.67 -12.69 5.30 -317.17 -1.68 -14.37 16 23 C 0.14 2.80 6.30 38.15 0.24 3.04 16 24 C -0.15 -2.14 9.97 22.39 0.22 -1.92 16 25 C -0.10 -1.27 10.04 22.25 0.22 -1.05 16 26 C -0.14 -1.83 10.04 22.29 0.22 -1.61 16 27 C -0.11 -1.96 10.04 22.25 0.22 -1.73 16 28 C -0.15 -3.29 8.69 22.39 0.19 -3.09 16 29 H 0.29 15.68 6.62 -92.71 -0.61 15.07 16 30 H 0.08 4.53 6.46 -2.90 -0.02 4.51 16 31 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 32 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 33 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.13 2.82 8.05 -2.39 -0.02 2.80 16 35 H 0.11 3.33 7.06 -2.39 -0.02 3.31 16 36 H 0.44 6.00 6.71 -213.32 -1.43 4.56 16 37 H 0.44 13.19 8.10 -213.32 -1.73 11.46 16 38 H 0.42 4.93 6.75 -92.71 -0.63 4.31 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 41 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.12 3.15 6.23 -2.91 -0.02 3.13 16 Total: -1.00 -73.79 367.85 0.69 -73.10 By element: Atomic # 1 Polarization: 45.06 SS G_CDS: -2.54 Total: 42.53 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 4.93 Total: -30.76 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -3.65 Total: -85.80 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.11 Total: -44.47 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.06 Total: 45.40 kcal Total: -73.79 0.69 -73.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801990615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.291 kcal (2) G-P(sol) polarization free energy of solvation -73.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds