Wall clock time and date at job start Tue Mar 31 2020 22:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 120.00098 * 2 1 4 4 H 1.48500 * 109.46734 * 240.00191 * 3 2 1 5 5 H 1.48497 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46953 * 119.99957 * 3 2 1 7 7 C 1.39947 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99574 * 194.06039 * 7 2 1 9 9 C 1.41390 * 119.99979 * 14.06444 * 7 2 1 10 10 C 1.40726 * 120.24197 * 208.12651 * 9 7 2 11 11 C 1.37617 * 119.74373 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24925 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.74870 * 179.97438 * 12 11 10 14 14 O 1.45200 * 109.47526 * 89.99596 * 13 12 11 15 15 C 1.34760 * 117.00010 * 180.02562 * 14 13 12 16 16 O 1.21524 * 120.00192 * 0.02562 * 15 14 13 17 17 C 1.47298 * 120.00073 * 180.02562 * 15 14 13 18 18 C 1.39834 * 120.99723 * 354.21560 * 17 15 14 19 19 N 1.32184 * 118.99141 * 179.97438 * 18 17 15 20 20 C 1.31983 * 121.20159 * 0.02562 * 19 18 17 21 21 C 1.50701 * 118.87581 * 179.97438 * 20 19 18 22 22 C 1.53008 * 117.49565 * 299.99103 * 21 20 19 23 23 C 1.53004 * 60.02911 * 107.48452 * 22 21 20 24 24 N 1.31667 * 122.24318 * 0.25175 * 20 19 18 25 25 C 1.32984 * 120.85066 * 359.48612 * 24 20 19 26 26 N 1.37842 * 120.64728 * 180.25371 * 25 24 20 27 27 C 1.38638 * 120.50154 * 0.24696 * 12 11 10 28 28 C 1.37620 * 120.24730 * 359.45740 * 27 12 11 29 29 H 0.97000 * 119.99608 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.12465 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.87189 * 180.02562 * 11 10 9 32 32 H 1.08999 * 109.47101 * 329.99496 * 13 12 11 33 33 H 1.09004 * 109.47204 * 209.99932 * 13 12 11 34 34 H 1.07994 * 120.50581 * 359.97438 * 18 17 15 35 35 H 1.09007 * 115.54846 * 154.32917 * 21 20 19 36 36 H 1.09001 * 117.49353 * 214.98170 * 22 21 20 37 37 H 1.08996 * 117.49625 * 359.97438 * 22 21 20 38 38 H 1.08995 * 117.50205 * 107.50221 * 23 22 21 39 39 H 1.09001 * 117.49558 * 252.52790 * 23 22 21 40 40 H 0.96999 * 120.00003 * 187.26502 * 26 25 24 41 41 H 0.96996 * 119.99584 * 7.25869 * 26 25 24 42 42 H 1.07999 * 119.87324 * 179.70053 * 27 12 11 43 43 H 1.08004 * 120.12535 * 180.27215 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0637 -1.2261 0.2267 9 6 1.3327 -2.4180 -0.2986 10 6 1.7882 -3.6366 0.2379 11 6 1.1235 -4.8044 -0.0595 12 6 0.0095 -4.7833 -0.8844 13 6 -0.7094 -6.0688 -1.2031 14 8 -1.7458 -6.3020 -0.2132 15 6 -2.4866 -7.4188 -0.3545 16 8 -2.2722 -8.1772 -1.2795 17 6 -3.5565 -7.7201 0.6121 18 6 -3.7436 -6.9282 1.7492 19 7 -4.7164 -7.2344 2.5902 20 6 -5.5068 -8.2690 2.3739 21 6 -6.5989 -8.5707 3.3675 22 6 -6.1802 -8.8692 4.8086 23 6 -6.8569 -7.5396 4.4690 24 7 -5.3702 -9.0496 1.3224 25 6 -4.4229 -8.8168 0.4187 26 7 -4.2870 -9.6337 -0.6833 27 6 -0.4447 -3.5893 -1.4231 28 6 0.2008 -2.4086 -1.1345 29 1 -0.4849 0.8401 0.0004 30 1 2.6565 -3.6554 0.8798 31 1 1.4710 -5.7407 0.3515 32 1 0.0006 -6.8957 -1.1874 33 1 -1.1614 -5.9967 -2.1923 34 1 -3.1032 -6.0792 1.9375 35 1 -7.4590 -9.1106 2.9712 36 1 -6.7651 -9.6051 5.3604 37 1 -5.1148 -8.8478 5.0377 38 1 -7.8868 -7.4008 4.7976 39 1 -6.2365 -6.6434 4.4745 40 1 -3.5308 -9.5210 -1.2803 41 1 -4.9475 -10.3213 -0.8616 42 1 -1.3106 -3.5853 -2.0685 43 1 -0.1574 -1.4790 -1.5517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803708972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:17 Heat of formation + Delta-G solvation = 5.508347 kcal Electronic energy + Delta-G solvation = -27335.522542 eV Core-core repulsion = 23346.160536 eV Total energy + Delta-G solvation = -3989.362006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42402 -39.91221 -37.83586 -37.39302 -36.36897 -35.27388 -33.87788 -33.07175 -31.16522 -30.49067 -29.42038 -27.35883 -26.04272 -24.08678 -23.84913 -22.57492 -22.03831 -21.13392 -21.01717 -20.11322 -18.65303 -17.67493 -17.50778 -17.40175 -16.79919 -16.22712 -16.03228 -15.43447 -15.34232 -15.05529 -14.60134 -14.45122 -13.94020 -13.85898 -13.75678 -13.02435 -12.53122 -12.51450 -12.37667 -12.18019 -12.06880 -11.79107 -11.76887 -11.59900 -11.20130 -11.09963 -11.04146 -10.89281 -10.75011 -10.50742 -10.31653 -10.24612 -9.91251 -9.73973 -9.48859 -9.40463 -9.28740 -8.67285 -7.60057 -7.46471 -6.85643 -4.50202 0.33427 1.20290 2.34848 2.49654 2.89532 2.96702 3.01519 3.03315 3.05435 3.32488 3.39123 3.69753 3.85287 3.87209 4.14214 4.49134 4.56871 4.61219 4.73917 4.77239 4.94947 5.22702 5.36491 5.41206 5.54883 5.58794 5.60270 5.62500 5.81477 5.98715 6.00424 6.12442 6.19722 6.27051 6.54428 6.63924 6.83359 6.94548 6.96465 7.13137 7.22200 7.48427 7.48599 7.68713 7.88881 7.92829 7.95307 8.05568 8.16385 8.51003 8.76182 8.82961 10.08640 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002290 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.946991 B =12226.220404 C =13651.070995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.120 3.880 10 C -0.227 4.227 11 C -0.064 4.064 12 C -0.235 4.235 13 C 0.137 3.863 14 O -0.340 6.340 15 C 0.528 3.472 16 O -0.534 6.534 17 C -0.315 4.315 18 C 0.252 3.748 19 N -0.565 5.565 20 C 0.418 3.582 21 C -0.109 4.109 22 C -0.153 4.153 23 C -0.150 4.150 24 N -0.583 5.583 25 C 0.494 3.506 26 N -0.812 5.812 27 C -0.076 4.076 28 C -0.165 4.165 29 H 0.283 0.717 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.186 0.814 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.428 0.572 41 H 0.404 0.596 42 H 0.089 0.911 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 -13.802 3.910 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.246 4.246 11 C -0.083 4.083 12 C -0.237 4.237 13 C 0.066 3.934 14 O -0.255 6.255 15 C 0.374 3.626 16 O -0.426 6.426 17 C -0.327 4.327 18 C 0.087 3.913 19 N -0.284 5.284 20 C 0.151 3.849 21 C -0.129 4.129 22 C -0.191 4.191 23 C -0.187 4.187 24 N -0.309 5.309 25 C 0.245 3.755 26 N -0.362 5.362 27 C -0.095 4.095 28 C -0.185 4.185 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.203 0.797 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.271 0.729 41 H 0.234 0.766 42 H 0.107 0.893 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.048 -14.008 4.179 18.944 hybrid contribution 1.054 0.597 -1.111 1.644 sum -10.993 -13.412 3.069 17.611 Atomic orbital electron populations 1.69796 1.07567 1.29587 1.34484 1.25955 0.94833 1.01446 0.92226 0.86302 0.80078 0.79960 0.80045 1.18766 1.20233 1.18900 1.19635 0.96942 0.90812 1.41294 0.90230 1.17696 0.90869 0.92110 0.87576 1.21012 1.03965 0.93024 1.06646 1.20401 0.95083 0.96638 0.96149 1.18661 1.01069 0.92327 1.11608 1.21804 0.86099 0.96632 0.88895 1.86779 1.45275 1.39525 1.53955 1.20488 0.80007 0.79519 0.82548 1.90479 1.69155 1.49218 1.33775 1.20222 1.04993 1.04202 1.03285 1.23579 0.89191 0.93704 0.84864 1.68246 1.07956 1.19647 1.32585 1.22061 0.90477 0.84084 0.88285 1.20709 0.97351 1.06830 0.88038 1.22992 1.02170 0.99860 0.94104 1.23076 1.02209 0.94374 0.99065 1.67811 1.24218 1.33236 1.05597 1.18350 0.86175 0.85051 0.85901 1.43069 1.31671 1.36069 1.25434 1.20548 0.97687 0.92537 0.98689 1.21279 0.99505 0.96380 1.01287 0.90588 0.88640 0.89247 0.91844 0.91798 0.79714 0.85267 0.87900 0.88330 0.88104 0.86709 0.72879 0.76627 0.89282 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.78 10.99 55.55 0.61 -19.17 16 2 C 0.07 1.79 5.19 -17.34 -0.09 1.70 16 3 Si 0.91 18.03 29.58 -169.99 -5.03 13.00 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 8 H 0.08 1.94 7.88 -52.49 -0.41 1.53 16 9 C 0.12 3.09 5.54 -106.82 -0.59 2.50 16 10 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 11 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 12 C -0.24 -4.99 5.54 -104.33 -0.58 -5.57 16 13 C 0.14 2.48 5.59 36.00 0.20 2.68 16 14 O -0.34 -5.99 9.57 -40.65 -0.39 -6.37 16 15 C 0.53 8.43 7.89 34.41 0.27 8.70 16 16 O -0.53 -8.69 13.61 -19.28 -0.26 -8.95 16 17 C -0.31 -4.53 5.92 -104.53 -0.62 -5.15 16 18 C 0.25 3.45 10.89 -16.80 -0.18 3.27 16 19 N -0.57 -7.55 9.30 -10.44 -0.10 -7.65 16 20 C 0.42 5.28 7.31 -157.14 -1.15 4.13 16 21 C -0.11 -1.03 6.23 -91.73 -0.57 -1.60 16 22 C -0.15 -1.19 10.23 -26.72 -0.27 -1.47 16 23 C -0.15 -1.20 10.01 -26.69 -0.27 -1.47 16 24 N -0.58 -7.64 10.35 -9.74 -0.10 -7.74 16 25 C 0.49 6.62 7.83 -154.89 -1.21 5.41 16 26 N -0.81 -8.93 8.92 31.40 0.28 -8.65 16 27 C -0.08 -1.72 9.67 -39.66 -0.38 -2.10 16 28 C -0.17 -4.14 8.67 -38.87 -0.34 -4.48 16 29 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 30 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.19 2.38 7.72 -52.49 -0.41 1.97 16 35 H 0.13 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 1.09 7.53 -51.93 -0.39 0.69 16 40 H 0.43 5.02 5.54 -40.82 -0.23 4.80 16 41 H 0.40 3.38 8.95 -40.82 -0.37 3.02 16 42 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 43 H 0.12 3.06 6.30 -52.48 -0.33 2.73 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -28.06 373.77 -11.31 -39.37 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.06 Total: 13.53 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -6.89 Total: -12.99 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.69 Total: -43.21 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.65 Total: -15.32 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.06 -11.31 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803708972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.880 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds