Wall clock time and date at job start Tue Mar 31 2020 22:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 120.00098 * 2 1 4 4 H 1.48500 * 109.46734 * 240.00191 * 3 2 1 5 5 H 1.48497 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46953 * 119.99957 * 3 2 1 7 7 C 1.39947 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99574 * 194.06039 * 7 2 1 9 9 C 1.41390 * 119.99979 * 14.06444 * 7 2 1 10 10 C 1.40726 * 120.24197 * 208.12651 * 9 7 2 11 11 C 1.37617 * 119.74373 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24925 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.74870 * 179.97438 * 12 11 10 14 14 O 1.45200 * 109.47526 * 89.99596 * 13 12 11 15 15 C 1.34760 * 117.00010 * 180.02562 * 14 13 12 16 16 O 1.21524 * 120.00192 * 0.02562 * 15 14 13 17 17 C 1.47298 * 120.00073 * 180.02562 * 15 14 13 18 18 C 1.39834 * 120.99723 * 354.21560 * 17 15 14 19 19 N 1.32184 * 118.99141 * 179.97438 * 18 17 15 20 20 C 1.31983 * 121.20159 * 0.02562 * 19 18 17 21 21 C 1.50701 * 118.87581 * 179.97438 * 20 19 18 22 22 C 1.53008 * 117.49565 * 299.99103 * 21 20 19 23 23 C 1.53004 * 60.02911 * 107.48452 * 22 21 20 24 24 N 1.31667 * 122.24318 * 0.25175 * 20 19 18 25 25 C 1.32984 * 120.85066 * 359.48612 * 24 20 19 26 26 N 1.37842 * 120.64728 * 180.25371 * 25 24 20 27 27 C 1.38638 * 120.50154 * 0.24696 * 12 11 10 28 28 C 1.37620 * 120.24730 * 359.45740 * 27 12 11 29 29 H 0.97000 * 119.99608 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.12465 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.87189 * 180.02562 * 11 10 9 32 32 H 1.08999 * 109.47101 * 329.99496 * 13 12 11 33 33 H 1.09004 * 109.47204 * 209.99932 * 13 12 11 34 34 H 1.07994 * 120.50581 * 359.97438 * 18 17 15 35 35 H 1.09007 * 115.54846 * 154.32917 * 21 20 19 36 36 H 1.09001 * 117.49353 * 214.98170 * 22 21 20 37 37 H 1.08996 * 117.49625 * 359.97438 * 22 21 20 38 38 H 1.08995 * 117.50205 * 107.50221 * 23 22 21 39 39 H 1.09001 * 117.49558 * 252.52790 * 23 22 21 40 40 H 0.96999 * 120.00003 * 187.26502 * 26 25 24 41 41 H 0.96996 * 119.99584 * 7.25869 * 26 25 24 42 42 H 1.07999 * 119.87324 * 179.70053 * 27 12 11 43 43 H 1.08004 * 120.12535 * 180.27215 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0637 -1.2261 0.2267 9 6 1.3327 -2.4180 -0.2986 10 6 1.7882 -3.6366 0.2379 11 6 1.1235 -4.8044 -0.0595 12 6 0.0095 -4.7833 -0.8844 13 6 -0.7094 -6.0688 -1.2031 14 8 -1.7458 -6.3020 -0.2132 15 6 -2.4866 -7.4188 -0.3545 16 8 -2.2722 -8.1772 -1.2795 17 6 -3.5565 -7.7201 0.6121 18 6 -3.7436 -6.9282 1.7492 19 7 -4.7164 -7.2344 2.5902 20 6 -5.5068 -8.2690 2.3739 21 6 -6.5989 -8.5707 3.3675 22 6 -6.1802 -8.8692 4.8086 23 6 -6.8569 -7.5396 4.4690 24 7 -5.3702 -9.0496 1.3224 25 6 -4.4229 -8.8168 0.4187 26 7 -4.2870 -9.6337 -0.6833 27 6 -0.4447 -3.5893 -1.4231 28 6 0.2008 -2.4086 -1.1345 29 1 -0.4849 0.8401 0.0004 30 1 2.6565 -3.6554 0.8798 31 1 1.4710 -5.7407 0.3515 32 1 0.0006 -6.8957 -1.1874 33 1 -1.1614 -5.9967 -2.1923 34 1 -3.1032 -6.0792 1.9375 35 1 -7.4590 -9.1106 2.9712 36 1 -6.7651 -9.6051 5.3604 37 1 -5.1148 -8.8478 5.0377 38 1 -7.8868 -7.4008 4.7976 39 1 -6.2365 -6.6434 4.4745 40 1 -3.5308 -9.5210 -1.2803 41 1 -4.9475 -10.3213 -0.8616 42 1 -1.3106 -3.5853 -2.0685 43 1 -0.1574 -1.4790 -1.5517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803708972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:16 Heat of formation + Delta-G solvation = -7.293272 kcal Electronic energy + Delta-G solvation = -27336.077662 eV Core-core repulsion = 23346.160536 eV Total energy + Delta-G solvation = -3989.917126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.47010 -41.15981 -39.50064 -38.32075 -37.57359 -36.32103 -35.64390 -34.08606 -32.67601 -31.75283 -31.23198 -28.97841 -27.12963 -25.56365 -25.00697 -23.19447 -23.17704 -22.94088 -22.00502 -21.83981 -19.70076 -19.25193 -18.75694 -18.53565 -18.06034 -17.53548 -17.14552 -16.91910 -16.32845 -16.12765 -16.03624 -15.64328 -15.43212 -15.25138 -14.89872 -14.51833 -14.06532 -13.97710 -13.84828 -13.55095 -13.25336 -13.14711 -12.86146 -12.78524 -12.67839 -12.59288 -12.29521 -12.11701 -11.94855 -11.74450 -11.62332 -11.44312 -11.32834 -11.27444 -11.06711 -10.78994 -10.42380 -9.67209 -9.42895 -9.30354 -8.65390 -6.40604 -0.71840 0.17427 0.70399 1.10986 1.30931 1.38679 1.43480 1.51059 1.79040 2.12871 2.20434 2.49672 2.72650 2.80060 3.01530 3.22721 3.56359 3.59381 3.74306 3.92768 3.95679 4.07044 4.12135 4.12424 4.32931 4.42688 4.47631 4.53702 4.56040 4.84134 4.96246 5.01117 5.09318 5.13078 5.21000 5.29214 5.32708 5.38362 5.39565 5.59084 5.66016 5.87023 6.00589 6.06208 6.13213 6.33036 6.50211 6.64958 6.65923 6.89573 6.97055 7.06747 8.31314 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002290 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.946991 B =12226.220404 C =13651.070995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.495 4.495 8 H 0.079 0.921 9 C 0.088 3.912 10 C -0.241 4.241 11 C -0.065 4.065 12 C -0.226 4.226 13 C 0.142 3.858 14 O -0.350 6.350 15 C 0.531 3.469 16 O -0.538 6.538 17 C -0.331 4.331 18 C 0.251 3.749 19 N -0.575 5.575 20 C 0.412 3.588 21 C -0.125 4.125 22 C -0.141 4.141 23 C -0.144 4.144 24 N -0.587 5.587 25 C 0.489 3.511 26 N -0.798 5.798 27 C -0.081 4.081 28 C -0.188 4.188 29 H 0.289 0.711 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.188 0.812 35 H 0.145 0.855 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.427 0.573 41 H 0.417 0.583 42 H 0.107 0.893 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.394 -15.212 4.490 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.524 4.524 8 H 0.097 0.903 9 C 0.086 3.914 10 C -0.261 4.261 11 C -0.083 4.083 12 C -0.227 4.227 13 C 0.070 3.930 14 O -0.266 6.266 15 C 0.378 3.622 16 O -0.431 6.431 17 C -0.343 4.343 18 C 0.085 3.915 19 N -0.294 5.294 20 C 0.146 3.854 21 C -0.145 4.145 22 C -0.180 4.180 23 C -0.181 4.181 24 N -0.313 5.313 25 C 0.239 3.761 26 N -0.348 5.348 27 C -0.099 4.099 28 C -0.208 4.208 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.205 0.795 35 H 0.163 0.837 36 H 0.147 0.853 37 H 0.104 0.896 38 H 0.143 0.857 39 H 0.115 0.885 40 H 0.269 0.731 41 H 0.249 0.751 42 H 0.125 0.875 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.131 -15.466 4.748 20.836 hybrid contribution 1.267 0.821 -1.277 1.978 sum -11.863 -14.645 3.471 19.164 Atomic orbital electron populations 1.69857 1.08971 1.30751 1.35363 1.26792 0.95570 1.04581 0.91228 0.85218 0.78720 0.75500 0.80099 1.18429 1.19262 1.18311 1.19884 0.97213 0.91956 1.43376 0.90265 1.18048 0.91680 0.93224 0.88438 1.21222 1.04589 0.93268 1.06994 1.20729 0.94741 0.97183 0.95684 1.18981 1.00708 0.93195 1.09804 1.21674 0.86618 0.95380 0.89335 1.86722 1.45485 1.40603 1.53787 1.20628 0.79939 0.78846 0.82771 1.90478 1.69366 1.49203 1.34065 1.20144 1.05372 1.05333 1.03490 1.23673 0.89304 0.93664 0.84825 1.68324 1.08201 1.20225 1.32623 1.22754 0.90661 0.83440 0.88563 1.20929 0.97085 1.08358 0.88153 1.23080 1.01884 1.00317 0.92672 1.23129 1.03320 0.93661 0.98035 1.67933 1.24145 1.33383 1.05806 1.18506 0.86050 0.85059 0.86472 1.43013 1.31689 1.35710 1.24432 1.20790 0.97941 0.92378 0.98799 1.21244 1.00410 0.96724 1.02408 0.90019 0.87918 0.86243 0.90225 0.90805 0.79510 0.83741 0.85256 0.89620 0.85653 0.88451 0.73066 0.75081 0.87517 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.58 10.99 21.83 0.24 -42.34 16 2 C 0.03 1.66 5.19 85.26 0.44 2.10 16 3 Si 0.98 37.45 29.58 68.60 2.03 39.48 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 7 C -0.50 -26.18 9.05 23.46 0.21 -25.96 16 8 H 0.08 4.01 7.88 -2.91 -0.02 3.98 16 9 C 0.09 4.70 5.54 -21.29 -0.12 4.58 16 10 C -0.24 -11.54 9.80 22.73 0.22 -11.32 16 11 C -0.07 -2.76 9.67 22.22 0.21 -2.54 16 12 C -0.23 -9.34 5.54 -19.68 -0.11 -9.45 16 13 C 0.14 4.85 5.59 71.23 0.40 5.25 16 14 O -0.35 -11.86 9.57 -56.71 -0.54 -12.40 16 15 C 0.53 16.27 7.89 70.20 0.55 16.82 16 16 O -0.54 -16.62 13.61 19.76 0.27 -16.35 16 17 C -0.33 -9.24 5.92 -19.81 -0.12 -9.36 16 18 C 0.25 6.78 10.89 85.03 0.93 7.71 16 19 N -0.57 -15.00 9.30 -186.93 -1.74 -16.74 16 20 C 0.41 9.93 7.31 138.73 1.01 10.94 16 21 C -0.13 -2.12 6.23 -11.51 -0.07 -2.19 16 22 C -0.14 -1.89 10.23 30.60 0.31 -1.58 16 23 C -0.14 -2.03 10.01 30.62 0.31 -1.72 16 24 N -0.59 -14.57 10.35 -184.72 -1.91 -16.48 16 25 C 0.49 12.49 7.83 133.77 1.05 13.54 16 26 N -0.80 -16.27 8.92 -54.58 -0.49 -16.76 16 27 C -0.08 -3.66 9.67 22.22 0.21 -3.44 16 28 C -0.19 -9.76 8.67 22.73 0.20 -9.56 16 29 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 30 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 32 H 0.08 2.48 8.08 -2.39 -0.02 2.46 16 33 H 0.07 2.39 8.07 -2.38 -0.02 2.37 16 34 H 0.19 4.81 7.72 -2.91 -0.02 4.79 16 35 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.75 7.53 -2.39 -0.02 1.73 16 40 H 0.43 9.32 5.54 -92.71 -0.51 8.81 16 41 H 0.42 6.21 8.95 -92.71 -0.83 5.38 16 42 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.10 5.50 6.30 -2.91 -0.02 5.48 16 Total: -1.00 -61.34 373.77 3.25 -58.09 By element: Atomic # 1 Polarization: 39.94 SS G_CDS: -0.26 Total: 39.68 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 5.65 Total: -16.18 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -3.90 Total: -92.32 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.27 Total: -28.75 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -61.34 3.25 -58.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803708972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.797 kcal (2) G-P(sol) polarization free energy of solvation -61.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds