Wall clock time and date at job start Tue Mar 31 2020 22:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86807 * 119.99806 * 2 1 4 4 H 1.48495 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46930 * 300.00327 * 3 2 1 6 6 H 1.48500 * 109.46729 * 59.99753 * 3 2 1 7 7 C 1.38648 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99710 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00003 * 185.35060 * 9 7 2 11 11 C 1.38948 * 120.03517 * 185.56612 * 10 9 7 12 12 C 1.38128 * 120.07445 * 180.02562 * 11 10 9 13 13 C 1.38196 * 120.13785 * 0.02562 * 12 11 10 14 14 C 1.38927 * 120.06689 * 0.02562 * 13 12 11 15 15 N 1.39921 * 120.03988 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99394 * 325.29295 * 15 14 13 17 17 O 1.21284 * 120.00485 * 354.54351 * 16 15 14 18 18 C 1.50706 * 119.99744 * 174.54822 * 16 15 14 19 19 H 1.09000 * 109.63228 * 59.99538 * 18 16 15 20 20 C 1.53306 * 109.63337 * 180.39926 * 18 16 15 21 21 C 1.52816 * 108.51688 * 189.47984 * 20 18 16 22 22 C 1.50442 * 110.45147 * 308.97001 * 21 20 18 23 23 N 1.32896 * 118.53723 * 197.67090 * 22 21 20 24 24 C 1.31601 * 121.05984 * 180.22518 * 23 22 21 25 25 N 1.31807 * 121.67479 * 0.03323 * 24 23 22 26 26 C 1.32185 * 120.64249 * 359.88136 * 25 24 23 27 27 C 1.37772 * 122.58066 * 17.71618 * 22 21 20 28 28 C 1.50416 * 122.87005 * 359.57283 * 27 22 21 29 29 C 1.38731 * 120.03440 * 5.59438 * 10 9 7 30 30 H 0.96998 * 119.99813 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.96112 * 0.04734 * 11 10 9 32 32 H 1.08000 * 119.92718 * 180.02562 * 12 11 10 33 33 H 1.08003 * 119.96749 * 180.27721 * 13 12 11 34 34 H 0.96998 * 120.00631 * 145.28594 * 15 14 13 35 35 H 1.08990 * 109.63187 * 309.18754 * 20 18 16 36 36 H 1.08997 * 109.63287 * 69.58043 * 20 18 16 37 37 H 1.09004 * 109.30716 * 69.26754 * 21 20 18 38 38 H 1.08997 * 109.30681 * 188.86474 * 21 20 18 39 39 H 1.08009 * 119.15903 * 180.02562 * 24 23 22 40 40 H 1.08005 * 120.36568 * 179.97438 * 26 25 24 41 41 H 1.08999 * 109.16111 * 257.01003 * 28 27 22 42 42 H 1.08996 * 109.50784 * 137.57614 * 28 27 22 43 43 H 1.07999 * 120.06741 * 359.94845 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0696 -3.5042 0.1139 11 6 1.4535 -4.7448 0.0048 12 6 2.2003 -5.9010 0.1205 13 6 3.5619 -5.8280 0.3455 14 6 4.1837 -4.5906 0.4566 15 7 5.5622 -4.5174 0.6849 16 6 6.1682 -5.4447 1.4526 17 8 5.5065 -6.2843 2.0256 18 6 7.6681 -5.4384 1.5990 19 1 7.9900 -4.4907 2.0306 20 6 8.1016 -6.5930 2.5096 21 6 9.5858 -6.4253 2.8327 22 6 10.3797 -6.2286 1.5700 23 7 11.6942 -6.4201 1.6101 24 6 12.4371 -6.2576 0.5361 25 7 11.9141 -5.8994 -0.6195 26 6 10.6137 -5.6929 -0.7354 27 6 9.7973 -5.8579 0.3777 28 6 8.3187 -5.6259 0.2287 29 6 3.4363 -3.4274 0.3392 30 1 -0.4850 0.8400 -0.0004 31 1 0.3896 -4.8052 -0.1709 32 1 1.7191 -6.8641 0.0350 33 1 4.1439 -6.7338 0.4311 34 1 6.0817 -3.7993 0.2907 35 1 7.5213 -6.5697 3.4319 36 1 7.9401 -7.5424 1.9993 37 1 9.7180 -5.5584 3.4801 38 1 9.9458 -7.3168 3.3461 39 1 13.5025 -6.4218 0.6034 40 1 10.1899 -5.3991 -1.6844 41 1 7.8700 -6.4859 -0.2685 42 1 8.1491 -4.7349 -0.3757 43 1 3.9175 -2.4643 0.4240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843530350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:01 Heat of formation + Delta-G solvation = 3.737919 kcal Electronic energy + Delta-G solvation = -27827.554996 eV Core-core repulsion = 23838.116218 eV Total energy + Delta-G solvation = -3989.438778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78249 -40.40482 -38.85474 -37.24612 -36.30651 -34.56220 -34.23439 -32.29347 -31.83707 -30.93252 -29.30917 -28.52256 -25.78835 -25.33874 -24.67815 -23.42595 -22.46706 -21.87591 -20.76585 -19.81883 -18.33779 -17.98688 -17.62051 -17.34695 -16.91584 -15.90522 -15.58712 -15.40670 -15.12376 -14.73248 -14.48649 -14.30780 -14.26466 -14.11575 -14.01340 -13.75494 -13.61291 -13.37053 -13.03172 -12.64265 -12.45613 -12.14015 -11.80662 -11.61100 -11.58271 -11.34675 -11.22758 -11.13339 -10.99354 -10.85137 -10.76555 -10.48609 -9.94312 -9.68993 -9.62285 -9.56913 -9.43976 -8.86069 -7.80418 -7.21830 -6.49605 -4.09469 0.50105 0.65597 1.87819 2.30953 2.73025 3.07916 3.08234 3.10534 3.14257 3.35046 3.60217 3.81659 3.91298 4.01741 4.09857 4.19738 4.38197 4.52176 4.60074 4.81966 4.86464 4.96933 5.01579 5.05688 5.11360 5.17927 5.22745 5.35652 5.44276 5.60533 5.66886 5.72579 5.85904 5.92181 6.01277 6.04092 6.18188 6.22106 6.57436 6.59419 6.89775 6.92507 7.06512 7.24887 7.36631 7.59985 7.70128 7.74610 7.94287 8.20352 8.95776 9.65869 10.68431 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.002452 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.765687 B =11416.858853 C =12642.324174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.176 6.176 10 C 0.168 3.832 11 C -0.199 4.199 12 C -0.063 4.063 13 C -0.205 4.205 14 C 0.179 3.821 15 N -0.668 5.668 16 C 0.516 3.484 17 O -0.514 6.514 18 C -0.108 4.108 19 H 0.104 0.896 20 C -0.099 4.099 21 C -0.074 4.074 22 C 0.182 3.818 23 N -0.521 5.521 24 C 0.289 3.711 25 N -0.523 5.523 26 C 0.153 3.847 27 C -0.178 4.178 28 C -0.065 4.065 29 C -0.256 4.256 30 H 0.270 0.730 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.406 0.594 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.195 0.805 40 H 0.170 0.830 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.719 -10.449 1.006 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.079 6.079 10 C 0.113 3.887 11 C -0.219 4.219 12 C -0.082 4.082 13 C -0.225 4.225 14 C 0.086 3.914 15 N -0.313 5.313 16 C 0.303 3.697 17 O -0.389 6.389 18 C -0.130 4.130 19 H 0.122 0.878 20 C -0.138 4.138 21 C -0.111 4.111 22 C 0.038 3.962 23 N -0.235 5.235 24 C 0.001 3.999 25 N -0.236 5.236 26 C -0.015 4.015 27 C -0.182 4.182 28 C -0.103 4.103 29 C -0.277 4.277 30 H 0.080 0.920 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.241 0.759 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.212 0.788 40 H 0.187 0.813 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.860 -11.008 1.474 23.632 hybrid contribution 0.030 1.486 -0.305 1.517 sum 20.889 -9.522 1.169 22.987 Atomic orbital electron populations 1.70044 1.05939 1.27594 1.45986 1.25286 0.95840 0.98815 0.96560 0.85661 0.79015 0.80481 0.78308 1.19209 1.20111 1.20146 1.21306 0.91662 0.80855 1.53008 0.89208 1.84022 1.33953 1.11387 1.78516 1.19091 0.89526 0.88128 0.91931 1.20262 1.00141 0.90001 1.11465 1.20528 0.93171 0.96953 0.97566 1.20481 0.95141 0.95718 1.11199 1.17390 0.81593 0.93944 0.98453 1.43527 1.07725 1.29744 1.50293 1.20473 0.89626 0.81291 0.78322 1.90741 1.66058 1.37213 1.44839 1.21379 0.91732 1.02313 0.97527 0.87769 1.21431 0.93785 0.97751 1.00802 1.20495 0.93389 1.04378 0.92878 1.21408 0.90124 0.89848 0.94850 1.68415 1.06180 1.16395 1.32543 1.24919 1.00888 0.90877 0.83216 1.68428 1.13691 1.13618 1.27854 1.23325 0.88789 0.90993 0.98361 1.21098 0.98227 1.03419 0.95465 1.20321 0.89504 1.03915 0.96582 1.20825 0.94386 0.97293 1.15205 0.92020 0.86361 0.86609 0.86554 0.75900 0.89053 0.90488 0.88796 0.88568 0.78802 0.81297 0.89071 0.89183 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.89 29.55 -169.99 -5.02 14.86 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -10.60 9.44 30.88 0.29 -10.31 16 8 H 0.09 2.22 5.29 -52.48 -0.28 1.94 16 9 O -0.18 -4.88 9.76 0.06 0.00 -4.88 16 10 C 0.17 3.94 6.64 -39.14 -0.26 3.68 16 11 C -0.20 -4.15 9.99 -39.36 -0.39 -4.54 16 12 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 13 C -0.20 -3.71 8.64 -39.34 -0.34 -4.05 16 14 C 0.18 3.20 6.25 -83.72 -0.52 2.68 16 15 N -0.67 -8.90 5.23 -9.88 -0.05 -8.95 16 16 C 0.52 6.52 6.86 -10.98 -0.08 6.45 16 17 O -0.51 -8.45 13.64 5.55 0.08 -8.38 16 18 C -0.11 -0.90 2.54 -91.69 -0.23 -1.13 16 19 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 20 C -0.10 -0.81 4.70 -26.67 -0.13 -0.93 16 21 C -0.07 -0.53 5.96 -28.10 -0.17 -0.70 16 22 C 0.18 1.59 6.62 -82.43 -0.55 1.05 16 23 N -0.52 -5.01 10.32 -11.00 -0.11 -5.13 16 24 C 0.29 2.50 12.29 -92.31 -1.13 1.37 16 25 N -0.52 -4.87 10.44 -14.54 -0.15 -5.02 16 26 C 0.15 1.21 10.93 -17.11 -0.19 1.02 16 27 C -0.18 -1.40 5.74 -104.64 -0.60 -2.00 16 28 C -0.06 -0.45 4.94 -28.10 -0.14 -0.58 16 29 C -0.26 -5.29 9.05 -39.21 -0.35 -5.65 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 32 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.12 2.03 6.53 -52.48 -0.34 1.68 16 34 H 0.41 4.11 8.68 -40.82 -0.35 3.76 16 35 H 0.09 0.81 7.81 -51.93 -0.41 0.40 16 36 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.20 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 41 H 0.09 0.66 8.11 -51.93 -0.42 0.23 16 42 H 0.09 0.47 8.01 -51.93 -0.42 0.06 16 43 H 0.13 2.63 5.71 -52.49 -0.30 2.33 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -34.03 363.22 -9.34 -43.37 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.03 Total: 6.89 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -5.28 Total: -14.23 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.44 Total: -43.11 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.03 -9.34 -43.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843530350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.112 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds