Wall clock time and date at job start Tue Mar 31 2020 22:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86807 * 119.99806 * 2 1 4 4 H 1.48495 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46930 * 300.00327 * 3 2 1 6 6 H 1.48500 * 109.46729 * 59.99753 * 3 2 1 7 7 C 1.38648 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99710 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00003 * 185.35060 * 9 7 2 11 11 C 1.38948 * 120.03517 * 185.56612 * 10 9 7 12 12 C 1.38128 * 120.07445 * 180.02562 * 11 10 9 13 13 C 1.38196 * 120.13785 * 0.02562 * 12 11 10 14 14 C 1.38927 * 120.06689 * 0.02562 * 13 12 11 15 15 N 1.39921 * 120.03988 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99394 * 325.29295 * 15 14 13 17 17 O 1.21284 * 120.00485 * 354.54351 * 16 15 14 18 18 C 1.50706 * 119.99744 * 174.54822 * 16 15 14 19 19 H 1.09000 * 109.63228 * 59.99538 * 18 16 15 20 20 C 1.53306 * 109.63337 * 180.39926 * 18 16 15 21 21 C 1.52816 * 108.51688 * 189.47984 * 20 18 16 22 22 C 1.50442 * 110.45147 * 308.97001 * 21 20 18 23 23 N 1.32896 * 118.53723 * 197.67090 * 22 21 20 24 24 C 1.31601 * 121.05984 * 180.22518 * 23 22 21 25 25 N 1.31807 * 121.67479 * 0.03323 * 24 23 22 26 26 C 1.32185 * 120.64249 * 359.88136 * 25 24 23 27 27 C 1.37772 * 122.58066 * 17.71618 * 22 21 20 28 28 C 1.50416 * 122.87005 * 359.57283 * 27 22 21 29 29 C 1.38731 * 120.03440 * 5.59438 * 10 9 7 30 30 H 0.96998 * 119.99813 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.96112 * 0.04734 * 11 10 9 32 32 H 1.08000 * 119.92718 * 180.02562 * 12 11 10 33 33 H 1.08003 * 119.96749 * 180.27721 * 13 12 11 34 34 H 0.96998 * 120.00631 * 145.28594 * 15 14 13 35 35 H 1.08990 * 109.63187 * 309.18754 * 20 18 16 36 36 H 1.08997 * 109.63287 * 69.58043 * 20 18 16 37 37 H 1.09004 * 109.30716 * 69.26754 * 21 20 18 38 38 H 1.08997 * 109.30681 * 188.86474 * 21 20 18 39 39 H 1.08009 * 119.15903 * 180.02562 * 24 23 22 40 40 H 1.08005 * 120.36568 * 179.97438 * 26 25 24 41 41 H 1.08999 * 109.16111 * 257.01003 * 28 27 22 42 42 H 1.08996 * 109.50784 * 137.57614 * 28 27 22 43 43 H 1.07999 * 120.06741 * 359.94845 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0696 -3.5042 0.1139 11 6 1.4535 -4.7448 0.0048 12 6 2.2003 -5.9010 0.1205 13 6 3.5619 -5.8280 0.3455 14 6 4.1837 -4.5906 0.4566 15 7 5.5622 -4.5174 0.6849 16 6 6.1682 -5.4447 1.4526 17 8 5.5065 -6.2843 2.0256 18 6 7.6681 -5.4384 1.5990 19 1 7.9900 -4.4907 2.0306 20 6 8.1016 -6.5930 2.5096 21 6 9.5858 -6.4253 2.8327 22 6 10.3797 -6.2286 1.5700 23 7 11.6942 -6.4201 1.6101 24 6 12.4371 -6.2576 0.5361 25 7 11.9141 -5.8994 -0.6195 26 6 10.6137 -5.6929 -0.7354 27 6 9.7973 -5.8579 0.3777 28 6 8.3187 -5.6259 0.2287 29 6 3.4363 -3.4274 0.3392 30 1 -0.4850 0.8400 -0.0004 31 1 0.3896 -4.8052 -0.1709 32 1 1.7191 -6.8641 0.0350 33 1 4.1439 -6.7338 0.4311 34 1 6.0817 -3.7993 0.2907 35 1 7.5213 -6.5697 3.4319 36 1 7.9401 -7.5424 1.9993 37 1 9.7180 -5.5584 3.4801 38 1 9.9458 -7.3168 3.3461 39 1 13.5025 -6.4218 0.6034 40 1 10.1899 -5.3991 -1.6844 41 1 7.8700 -6.4859 -0.2685 42 1 8.1491 -4.7349 -0.3757 43 1 3.9175 -2.4643 0.4240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843530350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:00 Heat of formation + Delta-G solvation = -17.395074 kcal Electronic energy + Delta-G solvation = -27828.471391 eV Core-core repulsion = 23838.116218 eV Total energy + Delta-G solvation = -3990.355173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.43029 -41.55794 -40.42156 -38.42241 -37.51138 -35.69859 -35.04100 -34.21575 -32.49060 -31.74464 -30.80003 -29.98601 -27.33173 -26.40176 -25.42138 -24.00757 -23.62233 -23.47702 -21.87593 -20.83299 -19.75604 -19.32440 -18.79336 -18.07039 -17.80349 -17.15261 -16.90236 -16.64477 -16.16517 -15.94454 -15.82943 -15.53068 -15.40124 -14.99106 -14.96660 -14.86594 -14.60411 -14.42642 -14.21271 -13.98739 -13.55911 -13.27738 -13.12943 -12.88278 -12.77219 -12.62165 -12.45249 -12.17444 -12.07658 -11.97393 -11.85303 -11.42786 -11.38891 -11.24563 -10.82033 -10.69088 -10.20897 -10.17706 -9.34298 -8.86191 -8.45356 -6.13904 -0.08930 0.05508 0.40775 0.70994 1.37218 1.44959 1.55212 1.60125 2.01691 2.18716 2.74706 2.85237 3.02309 3.18479 3.25938 3.39910 3.44217 3.50991 3.59922 3.71947 3.93903 4.13232 4.21700 4.26295 4.31220 4.35371 4.45392 4.46627 4.55414 4.64775 4.65471 4.77104 4.80717 4.88914 5.03473 5.05545 5.10477 5.12643 5.23303 5.40928 5.47029 5.49842 5.68071 5.68839 5.99995 6.03052 6.18469 6.47459 6.99303 7.10004 7.12770 7.79551 8.77983 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.002452 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.765687 B =11416.858853 C =12642.324174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.410 4.410 8 H 0.105 0.895 9 O -0.228 6.228 10 C 0.132 3.868 11 C -0.215 4.215 12 C -0.053 4.053 13 C -0.197 4.197 14 C 0.189 3.811 15 N -0.660 5.660 16 C 0.520 3.480 17 O -0.551 6.551 18 C -0.096 4.096 19 H 0.126 0.874 20 C -0.095 4.095 21 C -0.066 4.066 22 C 0.168 3.832 23 N -0.540 5.540 24 C 0.281 3.719 25 N -0.542 5.542 26 C 0.149 3.851 27 C -0.177 4.177 28 C -0.059 4.059 29 C -0.259 4.259 30 H 0.272 0.728 31 H 0.116 0.884 32 H 0.152 0.848 33 H 0.132 0.868 34 H 0.424 0.576 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.217 0.783 40 H 0.194 0.806 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.728 -10.899 0.874 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.486 4.486 8 H 0.122 0.878 9 O -0.134 6.134 10 C 0.081 3.919 11 C -0.235 4.235 12 C -0.072 4.072 13 C -0.218 4.218 14 C 0.094 3.906 15 N -0.306 5.306 16 C 0.309 3.691 17 O -0.428 6.428 18 C -0.117 4.117 19 H 0.144 0.856 20 C -0.133 4.133 21 C -0.104 4.104 22 C 0.024 3.976 23 N -0.255 5.255 24 C -0.007 4.007 25 N -0.255 5.255 26 C -0.018 4.018 27 C -0.181 4.181 28 C -0.097 4.097 29 C -0.281 4.281 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.170 0.830 33 H 0.149 0.851 34 H 0.262 0.738 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.233 0.767 40 H 0.211 0.789 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 23.934 -11.497 1.337 26.586 hybrid contribution -0.780 1.295 -0.234 1.530 sum 23.154 -10.202 1.103 25.326 Atomic orbital electron populations 1.70196 1.08107 1.28704 1.48900 1.26595 0.96815 1.02797 0.95931 0.84533 0.78521 0.74856 0.78337 1.16900 1.19537 1.19797 1.21845 0.92548 0.81263 1.52940 0.87755 1.83988 1.35670 1.12558 1.81199 1.19630 0.90946 0.87936 0.93370 1.20478 1.00573 0.90187 1.12258 1.20915 0.93242 0.97455 0.95548 1.20821 0.95305 0.96323 1.09310 1.17411 0.83700 0.92878 0.96563 1.43529 1.05879 1.30758 1.50445 1.21205 0.91171 0.79896 0.76807 1.90731 1.67282 1.38581 1.46191 1.21362 0.88130 1.03459 0.98768 0.85648 1.21368 0.94299 0.97355 1.00304 1.20447 0.92328 1.05026 0.92571 1.21686 0.90215 0.89978 0.95684 1.68442 1.06734 1.17215 1.33090 1.25395 1.01923 0.90420 0.82959 1.68485 1.14517 1.14374 1.28170 1.23776 0.88460 0.90209 0.99373 1.21135 0.98530 1.03264 0.95199 1.20321 0.88634 1.05047 0.95746 1.20864 0.93565 0.98394 1.15248 0.91910 0.86549 0.83021 0.85065 0.73801 0.89846 0.91232 0.87731 0.88285 0.76719 0.78881 0.89071 0.86910 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.44 13.67 21.61 0.30 -55.15 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 3 Si 1.02 41.07 29.55 68.60 2.03 43.10 16 4 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.41 -22.86 9.44 67.92 0.64 -22.22 16 8 H 0.11 5.22 5.29 -2.91 -0.02 5.20 16 9 O -0.23 -13.30 9.76 -22.71 -0.22 -13.52 16 10 C 0.13 6.40 6.64 22.56 0.15 6.55 16 11 C -0.22 -9.06 9.99 22.41 0.22 -8.84 16 12 C -0.05 -1.83 10.03 22.23 0.22 -1.61 16 13 C -0.20 -6.66 8.64 22.42 0.19 -6.46 16 14 C 0.19 6.39 6.25 38.14 0.24 6.63 16 15 N -0.66 -15.62 5.23 -303.54 -1.59 -17.20 16 16 C 0.52 11.63 6.86 87.66 0.60 12.23 16 17 O -0.55 -16.85 13.64 -3.04 -0.04 -16.89 16 18 C -0.10 -1.28 2.54 -11.49 -0.03 -1.31 16 19 H 0.13 1.24 8.10 -2.39 -0.02 1.22 16 20 C -0.09 -1.32 4.70 30.64 0.14 -1.18 16 21 C -0.07 -0.80 5.96 29.71 0.18 -0.62 16 22 C 0.17 2.56 6.62 42.21 0.28 2.84 16 23 N -0.54 -9.43 10.32 -188.72 -1.95 -11.38 16 24 C 0.28 4.38 12.29 180.94 2.22 6.60 16 25 N -0.54 -8.99 10.44 -199.93 -2.09 -11.08 16 26 C 0.15 1.94 10.93 84.83 0.93 2.87 16 27 C -0.18 -2.28 5.74 -19.88 -0.11 -2.39 16 28 C -0.06 -0.60 4.94 29.70 0.15 -0.46 16 29 C -0.26 -10.64 9.05 22.51 0.20 -10.44 16 30 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 32 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.13 4.14 6.53 -2.91 -0.02 4.12 16 34 H 0.42 7.08 8.68 -92.71 -0.80 6.27 16 35 H 0.08 1.33 7.81 -2.39 -0.02 1.31 16 36 H 0.07 1.08 8.11 -2.39 -0.02 1.06 16 37 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.22 2.04 8.06 -2.91 -0.02 2.01 16 40 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 41 H 0.09 0.99 8.11 -2.39 -0.02 0.97 16 42 H 0.11 0.67 8.01 -2.39 -0.02 0.65 16 43 H 0.13 5.21 5.71 -2.91 -0.02 5.20 16 Total: -1.00 -77.59 363.22 3.40 -74.19 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.27 Total: 26.61 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 6.70 Total: -18.68 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -5.33 Total: -94.81 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.26 Total: -30.42 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -77.59 3.40 -74.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843530350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.799 kcal (2) G-P(sol) polarization free energy of solvation -77.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds