Wall clock time and date at job start Tue Mar 31 2020 22:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48495 * 109.47602 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47022 * 300.00039 * 3 2 1 6 6 H 1.48509 * 109.47173 * 59.99604 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 17 17 C 1.52996 * 109.46842 * 299.72137 * 15 13 12 18 18 O 1.42902 * 109.47438 * 305.00131 * 17 15 13 19 19 N 1.46491 * 109.46957 * 179.72354 * 15 13 12 20 20 C 1.34776 * 120.00056 * 205.00172 * 19 15 13 21 21 O 1.21514 * 119.99932 * 359.97438 * 20 19 15 22 22 C 1.48164 * 120.00247 * 180.02562 * 20 19 15 23 23 C 1.39227 * 119.70330 * 179.72166 * 22 20 19 24 24 C 1.38674 * 119.11464 * 179.79428 * 23 22 20 25 25 C 1.38495 * 118.52153 * 0.46838 * 24 23 22 26 26 C 1.38891 * 119.33158 * 359.75506 * 25 24 23 27 27 F 1.35109 * 119.58169 * 179.97438 * 26 25 24 28 28 N 1.31698 * 120.83690 * 0.02562 * 26 25 24 29 29 H 0.97003 * 120.00173 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47217 * 60.00007 * 9 7 2 31 31 H 1.08997 * 109.47150 * 299.99540 * 9 7 2 32 32 H 1.08998 * 109.47307 * 59.99537 * 10 9 7 33 33 H 1.09005 * 109.46653 * 299.99472 * 10 9 7 34 34 H 1.08998 * 109.47382 * 59.99521 * 11 10 9 35 35 H 1.09002 * 109.47216 * 299.99958 * 11 10 9 36 36 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 37 37 H 1.09004 * 109.47559 * 65.00087 * 17 15 13 38 38 H 1.09005 * 109.47050 * 184.99858 * 17 15 13 39 39 H 0.96704 * 114.00183 * 180.02562 * 18 17 15 40 40 H 0.97003 * 120.00221 * 24.99650 * 19 15 13 41 41 H 1.07993 * 120.44411 * 0.02562 * 23 22 20 42 42 H 1.08000 * 120.73509 * 180.22749 * 24 23 22 43 43 H 1.08002 * 120.33617 * 179.77408 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3714 0.0009 14 8 0.7905 -7.5929 0.0000 15 6 2.9622 -8.5168 0.0078 16 1 3.5871 -8.4551 0.8986 17 6 3.8441 -8.4412 -1.2401 18 8 3.0182 -8.4047 -2.4057 19 7 2.2297 -9.7854 0.0119 20 6 2.8078 -10.8958 0.5112 21 8 3.9369 -10.8447 0.9575 22 6 2.0672 -12.1790 0.5149 23 6 2.6726 -13.3235 1.0269 24 6 1.9666 -14.5171 1.0283 25 6 0.6830 -14.5268 0.5084 26 6 0.1421 -13.3489 0.0093 27 9 -1.1095 -13.3528 -0.4995 28 7 0.8342 -12.2286 0.0248 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5568 0.8903 32 1 2.8712 -3.6040 0.8922 33 1 2.8725 -3.6047 -0.8878 34 1 0.8545 -5.0450 -0.8894 35 1 0.8526 -5.0448 0.8905 36 1 3.3858 -5.9234 0.0021 37 1 4.4550 -7.5394 -1.1994 38 1 4.4917 -9.3171 -1.2810 39 1 3.5115 -8.3567 -3.2361 40 1 1.3285 -9.8263 -0.3446 41 1 3.6771 -13.2815 1.4211 42 1 2.4095 -15.4199 1.4224 43 1 0.1082 -15.4411 0.4915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845439380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:19 Heat of formation + Delta-G solvation = -133.129410 kcal Electronic energy + Delta-G solvation = -28104.251863 eV Core-core repulsion = 23678.108848 eV Total energy + Delta-G solvation = -4426.143015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.45828 -41.18122 -40.14058 -38.92639 -37.04667 -35.58295 -34.67053 -33.43733 -33.32341 -31.78657 -31.34407 -29.70661 -26.71830 -25.61102 -24.28632 -23.90777 -22.82556 -21.21747 -20.72100 -20.09884 -19.08541 -18.24060 -17.71267 -17.30407 -16.73636 -16.62665 -16.52055 -16.27326 -16.13268 -15.60376 -15.31970 -15.15362 -14.63125 -14.44188 -14.42297 -14.20896 -14.01726 -13.73892 -13.53932 -13.38658 -12.87828 -12.68794 -12.31266 -12.12263 -11.84451 -11.68206 -11.03815 -10.93001 -10.76141 -10.71133 -10.58760 -10.46630 -10.18965 -9.95474 -9.88784 -9.67673 -9.51110 -9.31376 -9.10885 -8.83828 -8.38354 -6.02653 -4.05811 -0.05929 0.45674 2.16024 2.43222 2.65499 2.90925 3.17306 3.29386 3.33626 3.37165 3.40610 3.77485 3.87922 4.16269 4.23176 4.35878 4.43312 4.56399 4.69449 4.72637 4.97183 5.07720 5.12054 5.20581 5.22716 5.33216 5.39684 5.68172 5.76289 5.91549 5.95986 6.14360 6.41748 6.58121 6.76977 6.80425 6.98093 7.21940 7.32461 7.56327 7.62888 7.75046 7.75920 7.96072 8.25054 8.37212 9.01097 9.58476 11.08638 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.001804 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.437935 B =15519.560116 C =16104.154416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.118 3.882 12 N -0.718 5.718 13 C 0.516 3.484 14 O -0.531 6.531 15 C 0.125 3.875 16 H 0.130 0.870 17 C 0.069 3.931 18 O -0.562 6.562 19 N -0.679 5.679 20 C 0.575 3.425 21 O -0.532 6.532 22 C 0.119 3.881 23 C -0.122 4.122 24 C -0.052 4.052 25 C -0.171 4.171 26 C 0.311 3.689 27 F -0.106 7.106 28 N -0.486 5.486 29 H 0.261 0.739 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.383 0.617 40 H 0.426 0.574 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.321 -32.176 -0.176 33.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C -0.005 4.005 12 N -0.369 5.369 13 C 0.300 3.700 14 O -0.408 6.408 15 C 0.016 3.984 16 H 0.147 0.853 17 C -0.011 4.011 18 O -0.367 6.367 19 N -0.332 5.332 20 C 0.359 3.641 21 O -0.409 6.409 22 C -0.019 4.019 23 C -0.143 4.143 24 C -0.078 4.078 25 C -0.192 4.192 26 C 0.155 3.845 27 F -0.085 7.085 28 N -0.203 5.203 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.230 0.770 40 H 0.265 0.735 41 H 0.177 0.823 42 H 0.174 0.826 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.190 -31.383 0.234 32.197 hybrid contribution 0.898 0.376 -0.400 1.052 sum 8.087 -31.008 -0.166 32.045 Atomic orbital electron populations 1.69977 1.06058 1.26592 1.50590 1.25039 0.94864 0.99337 0.95290 0.86522 0.80021 0.83748 0.77600 1.19770 1.21009 1.21004 1.21236 0.93021 0.90914 1.50861 0.92579 1.19036 0.93863 0.90845 0.97710 1.21892 0.99788 0.93258 1.00904 1.21686 0.91784 0.84802 1.02194 1.46057 1.10891 1.05500 1.74419 1.20088 0.89244 0.84019 0.76665 1.90720 1.16357 1.84324 1.49368 1.21039 0.93707 0.83798 0.99827 0.85286 1.22507 0.92003 1.01429 0.85148 1.86572 1.36628 1.97497 1.16046 1.45490 1.20525 1.06508 1.60679 1.17734 0.85451 0.82855 0.78014 1.90805 1.17693 1.85096 1.47314 1.20770 0.89208 0.94715 0.97187 1.22207 1.02348 0.91601 0.98137 1.21571 0.92688 0.98676 0.94845 1.22119 0.97597 0.98663 1.00852 1.18054 0.81530 0.89892 0.95002 1.91686 1.35962 1.96655 1.84190 1.66837 1.07840 1.29001 1.16640 0.92969 0.96220 0.96254 0.92672 0.92679 0.91526 0.91635 0.76808 0.91695 0.91908 0.76964 0.73453 0.82296 0.82631 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 12 N -0.72 -10.00 5.46 -60.29 -0.33 -10.33 16 13 C 0.52 7.65 6.74 -10.98 -0.07 7.58 16 14 O -0.53 -10.01 15.84 5.55 0.09 -9.92 16 15 C 0.13 1.44 2.78 -69.09 -0.19 1.25 16 16 H 0.13 1.30 7.58 -51.93 -0.39 0.91 16 17 C 0.07 0.63 6.72 37.16 0.25 0.88 16 18 O -0.56 -5.90 13.09 -35.23 -0.46 -6.37 16 19 N -0.68 -8.43 4.89 -55.79 -0.27 -8.70 16 20 C 0.58 6.73 7.78 -12.18 -0.09 6.63 16 21 O -0.53 -6.74 15.98 5.35 0.09 -6.65 16 22 C 0.12 1.21 6.75 -83.02 -0.56 0.65 16 23 C -0.12 -0.84 9.63 -39.05 -0.38 -1.22 16 24 C -0.05 -0.23 10.16 -39.33 -0.40 -0.63 16 25 C -0.17 -0.93 10.09 -39.24 -0.40 -1.33 16 26 C 0.31 2.85 8.41 -17.37 -0.15 2.70 16 27 F -0.11 -1.06 17.29 2.25 0.04 -1.02 16 28 N -0.49 -5.42 9.55 -10.13 -0.10 -5.51 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.40 4.30 8.00 -40.82 -0.33 3.98 16 37 H 0.06 0.45 7.72 -51.93 -0.40 0.05 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.38 2.29 9.12 45.56 0.42 2.70 16 40 H 0.43 5.94 7.12 -40.82 -0.29 5.65 16 41 H 0.16 0.91 7.64 -52.49 -0.40 0.50 16 42 H 0.16 0.13 8.06 -52.49 -0.42 -0.29 16 43 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -36.25 382.10 -6.92 -43.17 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.74 Total: 6.00 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -2.70 Total: 3.22 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.04 Total: -50.61 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.29 Total: -22.94 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.25 -6.92 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845439380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.960 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds