Wall clock time and date at job start Tue Mar 31 2020 22:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48495 * 109.47602 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47022 * 300.00039 * 3 2 1 6 6 H 1.48509 * 109.47173 * 59.99604 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 17 17 C 1.52996 * 109.46842 * 299.72137 * 15 13 12 18 18 O 1.42902 * 109.47438 * 305.00131 * 17 15 13 19 19 N 1.46491 * 109.46957 * 179.72354 * 15 13 12 20 20 C 1.34776 * 120.00056 * 205.00172 * 19 15 13 21 21 O 1.21514 * 119.99932 * 359.97438 * 20 19 15 22 22 C 1.48164 * 120.00247 * 180.02562 * 20 19 15 23 23 C 1.39227 * 119.70330 * 179.72166 * 22 20 19 24 24 C 1.38674 * 119.11464 * 179.79428 * 23 22 20 25 25 C 1.38495 * 118.52153 * 0.46838 * 24 23 22 26 26 C 1.38891 * 119.33158 * 359.75506 * 25 24 23 27 27 F 1.35109 * 119.58169 * 179.97438 * 26 25 24 28 28 N 1.31698 * 120.83690 * 0.02562 * 26 25 24 29 29 H 0.97003 * 120.00173 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47217 * 60.00007 * 9 7 2 31 31 H 1.08997 * 109.47150 * 299.99540 * 9 7 2 32 32 H 1.08998 * 109.47307 * 59.99537 * 10 9 7 33 33 H 1.09005 * 109.46653 * 299.99472 * 10 9 7 34 34 H 1.08998 * 109.47382 * 59.99521 * 11 10 9 35 35 H 1.09002 * 109.47216 * 299.99958 * 11 10 9 36 36 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 37 37 H 1.09004 * 109.47559 * 65.00087 * 17 15 13 38 38 H 1.09005 * 109.47050 * 184.99858 * 17 15 13 39 39 H 0.96704 * 114.00183 * 180.02562 * 18 17 15 40 40 H 0.97003 * 120.00221 * 24.99650 * 19 15 13 41 41 H 1.07993 * 120.44411 * 0.02562 * 23 22 20 42 42 H 1.08000 * 120.73509 * 180.22749 * 24 23 22 43 43 H 1.08002 * 120.33617 * 179.77408 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3714 0.0009 14 8 0.7905 -7.5929 0.0000 15 6 2.9622 -8.5168 0.0078 16 1 3.5871 -8.4551 0.8986 17 6 3.8441 -8.4412 -1.2401 18 8 3.0182 -8.4047 -2.4057 19 7 2.2297 -9.7854 0.0119 20 6 2.8078 -10.8958 0.5112 21 8 3.9369 -10.8447 0.9575 22 6 2.0672 -12.1790 0.5149 23 6 2.6726 -13.3235 1.0269 24 6 1.9666 -14.5171 1.0283 25 6 0.6830 -14.5268 0.5084 26 6 0.1421 -13.3489 0.0093 27 9 -1.1095 -13.3528 -0.4995 28 7 0.8342 -12.2286 0.0248 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5568 0.8903 32 1 2.8712 -3.6040 0.8922 33 1 2.8725 -3.6047 -0.8878 34 1 0.8545 -5.0450 -0.8894 35 1 0.8526 -5.0448 0.8905 36 1 3.3858 -5.9234 0.0021 37 1 4.4550 -7.5394 -1.1994 38 1 4.4917 -9.3171 -1.2810 39 1 3.5115 -8.3567 -3.2361 40 1 1.3285 -9.8263 -0.3446 41 1 3.6771 -13.2815 1.4211 42 1 2.4095 -15.4199 1.4224 43 1 0.1082 -15.4411 0.4915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845439380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:19 Heat of formation + Delta-G solvation = -163.714615 kcal Electronic energy + Delta-G solvation = -28105.578137 eV Core-core repulsion = 23678.108848 eV Total energy + Delta-G solvation = -4427.469289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.12403 -41.95670 -41.09336 -39.86103 -37.88985 -37.06329 -35.61921 -35.23144 -33.96194 -33.16632 -32.31950 -30.72019 -28.46194 -26.26527 -25.53011 -24.60674 -24.16100 -22.34907 -22.09180 -21.23888 -19.99770 -18.93498 -18.61722 -18.44370 -18.05790 -17.48797 -17.30722 -17.20510 -16.95990 -16.75007 -16.56058 -16.28801 -16.22191 -15.65623 -15.36125 -15.05031 -14.83282 -14.70353 -14.29762 -14.25255 -14.13304 -13.78721 -13.76017 -13.39957 -13.31507 -12.91570 -12.77271 -12.55891 -12.35360 -11.86329 -11.68466 -11.63106 -11.29728 -11.20506 -11.17700 -10.95687 -10.77641 -10.56407 -10.41517 -10.18973 -10.13585 -8.19667 -6.31156 -0.63251 -0.05793 1.40617 1.41919 1.42004 1.46343 1.55277 1.60649 2.16019 2.33318 2.42454 2.55395 3.14280 3.16120 3.20111 3.48401 3.63513 3.77773 3.90284 3.92362 4.14137 4.19901 4.21449 4.28514 4.37610 4.50767 4.54150 4.60535 4.84515 4.93511 4.93756 4.94788 5.07544 5.16876 5.36446 5.43463 5.52202 5.70464 5.84209 6.06831 6.21645 6.37159 6.43705 6.80009 6.86048 6.86954 7.10335 7.38566 8.92675 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.001804 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.437935 B =15519.560116 C =16104.154416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.131 3.869 12 N -0.703 5.703 13 C 0.515 3.485 14 O -0.578 6.578 15 C 0.127 3.873 16 H 0.147 0.853 17 C 0.072 3.928 18 O -0.588 6.588 19 N -0.688 5.688 20 C 0.575 3.425 21 O -0.547 6.547 22 C 0.088 3.912 23 C -0.114 4.114 24 C -0.035 4.035 25 C -0.150 4.150 26 C 0.281 3.719 27 F -0.121 7.121 28 N -0.523 5.523 29 H 0.263 0.737 30 H -0.009 1.009 31 H -0.009 1.009 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.417 0.583 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.416 0.584 41 H 0.172 0.828 42 H 0.204 0.796 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.271 -33.998 0.267 35.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.008 3.992 12 N -0.355 5.355 13 C 0.301 3.699 14 O -0.457 6.457 15 C 0.019 3.981 16 H 0.164 0.836 17 C -0.007 4.007 18 O -0.397 6.397 19 N -0.339 5.339 20 C 0.361 3.639 21 O -0.425 6.425 22 C -0.049 4.049 23 C -0.135 4.135 24 C -0.060 4.060 25 C -0.171 4.171 26 C 0.125 3.875 27 F -0.100 7.100 28 N -0.241 5.241 29 H 0.071 0.929 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.255 0.745 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.251 0.749 40 H 0.254 0.746 41 H 0.190 0.810 42 H 0.221 0.779 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 10.213 -33.213 0.666 34.754 hybrid contribution -0.066 0.848 -0.533 1.004 sum 10.147 -32.365 0.133 33.919 Atomic orbital electron populations 1.70126 1.07986 1.27707 1.51805 1.26050 0.95757 1.03650 0.94847 0.85347 0.79243 0.78566 0.77550 1.18053 1.20662 1.20668 1.21715 0.93816 0.91912 1.50233 0.91343 1.18957 0.94501 0.93089 0.95027 1.21595 0.98411 0.91463 1.02376 1.21252 0.91914 0.85403 1.00675 1.45768 1.11340 1.04473 1.73950 1.20701 0.89211 0.84739 0.75234 1.90702 1.18628 1.85014 1.51355 1.21181 0.92860 0.82052 1.02040 0.83608 1.22566 0.91274 1.03213 0.83620 1.86532 1.38133 1.97629 1.17392 1.45603 1.20229 1.07131 1.60979 1.18027 0.85408 0.83249 0.77260 1.90774 1.18154 1.85489 1.48049 1.20694 0.89437 0.95019 0.99798 1.22486 1.02867 0.91401 0.96700 1.22117 0.91716 0.99193 0.93011 1.22530 0.97986 0.98230 0.98310 1.18507 0.81404 0.90927 0.96668 1.91644 1.36897 1.96756 1.84692 1.66620 1.08758 1.30819 1.17910 0.92859 0.99044 0.99037 0.91062 0.91095 0.93340 0.93189 0.74534 0.88867 0.90990 0.74851 0.74617 0.81008 0.77884 0.79260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.47 13.29 21.45 0.28 -57.19 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.54 -29.97 9.11 25.60 0.23 -29.73 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.82 5.27 30.59 0.16 -3.65 16 11 C 0.13 4.67 5.67 86.38 0.49 5.16 16 12 N -0.70 -19.11 5.46 -463.06 -2.53 -21.64 16 13 C 0.52 15.40 6.74 87.66 0.59 15.99 16 14 O -0.58 -22.76 15.84 -3.04 -0.05 -22.81 16 15 C 0.13 2.86 2.78 44.25 0.12 2.99 16 16 H 0.15 2.76 7.58 -2.39 -0.02 2.74 16 17 C 0.07 1.21 6.72 71.98 0.48 1.70 16 18 O -0.59 -11.94 13.09 -148.98 -1.95 -13.89 16 19 N -0.69 -17.55 4.89 -448.70 -2.19 -19.75 16 20 C 0.57 13.55 7.78 86.88 0.68 14.22 16 21 O -0.55 -13.46 15.98 -3.76 -0.06 -13.52 16 22 C 0.09 1.77 6.75 41.88 0.28 2.05 16 23 C -0.11 -1.34 9.63 22.61 0.22 -1.12 16 24 C -0.04 -0.18 10.16 22.44 0.23 0.05 16 25 C -0.15 -1.22 10.09 22.49 0.23 -1.00 16 26 C 0.28 5.11 8.41 84.87 0.71 5.83 16 27 F -0.12 -2.50 17.29 44.97 0.78 -1.72 16 28 N -0.52 -12.12 9.55 -185.98 -1.78 -13.89 16 29 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 30 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.42 8.10 8.00 -92.71 -0.74 7.36 16 37 H 0.09 1.02 7.72 -2.39 -0.02 1.01 16 38 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.40 4.35 9.12 -74.05 -0.68 3.67 16 40 H 0.42 12.40 7.12 -92.71 -0.66 11.74 16 41 H 0.17 1.53 7.64 -2.91 -0.02 1.51 16 42 H 0.20 -0.87 8.06 -2.91 -0.02 -0.89 16 43 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 Total: -1.00 -82.97 382.10 -1.42 -84.39 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.99 Total: 20.27 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 5.04 Total: 13.91 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -6.22 Total: -112.46 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -2.06 Total: -50.23 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -82.97 -1.42 -84.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845439380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.321 kcal (2) G-P(sol) polarization free energy of solvation -82.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds