Wall clock time and date at job start Tue Mar 31 2020 22:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00160 * 2 1 4 4 H 1.48495 * 109.47131 * 239.99435 * 3 2 1 5 5 H 1.48497 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46953 * 119.99471 * 3 2 1 7 7 C 1.37883 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99714 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52550 * 300.07481 * 9 7 2 11 11 C 1.53033 * 109.50179 * 60.15548 * 9 7 2 12 12 C 1.53041 * 109.53898 * 181.31603 * 11 9 7 13 13 C 1.53192 * 109.31320 * 298.63305 * 12 11 9 14 14 N 1.46927 * 108.77318 * 54.63839 * 13 12 11 15 15 S 1.65600 * 120.63168 * 126.37031 * 14 13 12 16 16 O 1.42094 * 106.40148 * 23.55949 * 15 14 13 17 17 O 1.42101 * 106.40004 * 156.48262 * 15 14 13 18 18 C 1.76197 * 107.21611 * 270.01652 * 15 14 13 19 19 C 1.34856 * 125.96971 * 269.71587 * 18 15 14 20 20 N 1.36312 * 106.68902 * 179.88569 * 19 18 15 21 21 C 1.35409 * 107.40174 * 0.42063 * 20 19 18 22 22 N 1.30094 * 108.63091 * 359.68999 * 21 20 19 23 23 C 1.51048 * 123.98584 * 179.67122 * 21 20 19 24 24 C 1.53397 * 108.20669 * 344.05385 * 23 21 20 25 25 C 1.53150 * 109.24084 * 48.82399 * 24 23 21 26 26 C 1.46481 * 127.77454 * 180.22450 * 20 19 18 27 27 C 1.46926 * 118.73580 * 306.38910 * 14 13 12 28 28 H 0.97003 * 120.00041 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.45957 * 61.30018 * 11 9 7 30 30 H 1.09004 * 109.45285 * 301.33296 * 11 9 7 31 31 H 1.09005 * 109.49689 * 178.68550 * 12 11 9 32 32 H 1.09002 * 109.50075 * 58.58639 * 12 11 9 33 33 H 1.08997 * 109.58972 * 294.84829 * 13 12 11 34 34 H 1.09000 * 109.58650 * 174.42277 * 13 12 11 35 35 H 1.07997 * 126.64978 * 359.97438 * 19 18 15 36 36 H 1.09000 * 109.71381 * 103.72982 * 23 21 20 37 37 H 1.09000 * 109.71643 * 224.32973 * 23 21 20 38 38 H 1.08997 * 109.50895 * 168.75234 * 24 23 21 39 39 H 1.09005 * 109.51091 * 288.89213 * 24 23 21 40 40 H 1.09005 * 109.46569 * 50.51885 * 25 24 23 41 41 H 1.08999 * 109.47160 * 170.50559 * 25 24 23 42 42 H 1.09001 * 109.58404 * 43.32206 * 26 20 19 43 43 H 1.08998 * 109.58366 * 282.90736 * 26 20 19 44 44 H 1.09006 * 109.58406 * 173.39827 * 27 14 13 45 45 H 1.09002 * 109.59019 * 293.81816 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6226 -2.5570 0.8893 11 6 0.3743 -2.5829 -1.2510 12 6 -0.4162 -3.8933 -1.2355 13 6 0.5599 -5.0739 -1.2491 14 7 1.5000 -4.9231 -0.1301 15 16 1.7145 -6.1487 0.9628 16 8 1.3330 -7.3472 0.3016 17 8 2.9993 -5.9533 1.5377 18 6 0.5468 -5.9019 2.2589 19 6 0.7514 -5.1868 3.3838 20 7 -0.4031 -5.2537 4.1055 21 6 -1.2756 -6.0156 3.4042 22 7 -0.7004 -6.3981 2.3018 23 6 -2.6758 -6.3401 3.8685 24 6 -2.7698 -6.0226 5.3663 25 6 -2.2041 -4.6225 5.6219 26 6 -0.6872 -4.6360 5.4030 27 6 2.2459 -3.6641 0.0011 28 1 -0.4850 0.8401 -0.0004 29 1 1.0053 -2.5500 -2.1392 30 1 -0.3182 -1.7412 -1.2662 31 1 -1.0577 -3.9416 -2.1154 32 1 -1.0288 -3.9380 -0.3351 33 1 1.1100 -5.0825 -2.1900 34 1 0.0067 -6.0066 -1.1384 35 1 1.6542 -4.6618 3.6587 36 1 -3.3954 -5.7338 3.3183 37 1 -2.8826 -7.3973 3.7024 38 1 -3.8128 -6.0567 5.6809 39 1 -2.1944 -6.7564 5.9308 40 1 -2.6642 -3.9136 4.9335 41 1 -2.4204 -4.3250 6.6479 42 1 -0.3076 -3.6143 5.4122 43 1 -0.2090 -5.2127 6.1947 44 1 2.8052 -3.6665 0.9367 45 1 2.9336 -3.5576 -0.8378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849419913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:44 Heat of formation + Delta-G solvation = -28.341091 kcal Electronic energy + Delta-G solvation = -28846.526058 eV Core-core repulsion = 24991.140181 eV Total energy + Delta-G solvation = -3855.385877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.39270 -37.62753 -36.83248 -36.77867 -35.38470 -33.44027 -33.28538 -31.02021 -30.12817 -30.05467 -28.73548 -25.09144 -24.71370 -23.52299 -22.52714 -22.15446 -21.60092 -19.37857 -19.28819 -18.17883 -17.58862 -17.03090 -16.25152 -16.11013 -15.98607 -15.38010 -14.67767 -14.61012 -14.44898 -14.17235 -13.89481 -13.78741 -13.61383 -13.42799 -13.11039 -12.73194 -12.60594 -12.23413 -12.11075 -11.67626 -11.57307 -11.51935 -11.47992 -11.38391 -11.22254 -11.16352 -10.97788 -10.81874 -10.73410 -10.17997 -10.07310 -9.92440 -9.83008 -9.73921 -9.34208 -8.84229 -8.65632 -8.43589 -8.09797 -6.03386 -4.10911 0.88897 1.76302 2.57964 2.70236 3.28287 3.33082 3.35999 3.56718 4.01097 4.20247 4.27101 4.30933 4.38051 4.39448 4.68222 4.85826 4.91303 5.03162 5.10072 5.25792 5.32462 5.38511 5.40469 5.46635 5.51041 5.62553 5.79458 5.82649 5.93102 6.09208 6.13722 6.34213 6.34908 6.41294 6.53950 6.67130 6.74037 6.95458 7.00816 7.11886 7.28221 7.48281 7.69770 7.87089 7.93470 8.09710 8.38820 8.93054 9.53960 11.01590 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.004680 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.512760 B = 5981.145716 C = 7409.584534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.027 0.973 11 C -0.109 4.109 12 C -0.133 4.133 13 C 0.127 3.873 14 N -0.988 5.988 15 S 2.723 3.277 16 O -0.957 6.957 17 O -0.963 6.963 18 C -0.557 4.557 19 C 0.077 3.923 20 N -0.450 5.450 21 C 0.204 3.796 22 N -0.409 5.409 23 C -0.034 4.034 24 C -0.125 4.125 25 C -0.137 4.137 26 C 0.097 3.903 27 C 0.125 3.875 28 H 0.260 0.740 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.193 0.807 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.898 -9.551 10.819 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.045 0.955 11 C -0.147 4.147 12 C -0.172 4.172 13 C 0.002 3.998 14 N -0.827 5.827 15 S 2.809 3.191 16 O -0.947 6.947 17 O -0.953 6.953 18 C -0.767 4.767 19 C -0.064 4.064 20 N -0.130 5.130 21 C -0.062 4.062 22 N -0.126 5.126 23 C -0.073 4.073 24 C -0.163 4.163 25 C -0.174 4.174 26 C -0.025 4.025 27 C 0.001 3.999 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.210 0.790 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.843 -10.534 10.312 15.857 hybrid contribution 0.282 2.066 1.083 2.350 sum -5.561 -8.468 11.396 15.248 Atomic orbital electron populations 1.69882 1.05897 1.26464 1.50507 1.24934 0.94801 0.98986 0.95010 0.86679 0.79597 0.83134 0.78697 1.20184 1.21422 1.20318 1.21101 0.93022 0.90375 1.50947 0.92402 1.18959 0.92923 0.91083 0.94966 0.95524 1.21559 0.99306 0.95353 0.98451 1.21977 0.97665 0.96822 1.00716 1.21403 0.90761 0.99088 0.88526 1.57628 1.54509 1.31831 1.38762 1.01131 0.72707 0.72894 0.72335 1.93516 1.84052 1.43752 1.73389 1.93557 1.36217 1.86360 1.79203 1.33680 1.10346 1.15059 1.17627 1.22543 0.91372 1.00396 0.92126 1.45625 1.11688 1.38005 1.17713 1.23599 0.95367 0.96913 0.90316 1.70068 1.03963 1.20993 1.17540 1.20232 0.87959 1.03674 0.95388 1.21690 1.02524 0.96537 0.95573 1.21924 0.93030 0.98652 1.03824 1.22141 0.98229 0.99728 0.82423 1.21828 0.94562 0.82164 1.01330 0.93016 0.94538 0.88987 0.92711 0.92653 0.91553 0.90249 0.79004 0.88880 0.88472 0.89763 0.91142 0.90118 0.89045 0.88370 0.89362 0.90762 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 11.32 55.43 0.63 -23.81 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.48 8.56 -34.44 -0.29 -13.77 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.97 2.25 -91.66 -0.21 0.76 16 10 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 12 C -0.13 -2.57 6.08 -26.61 -0.16 -2.73 16 13 C 0.13 2.30 6.38 -3.71 -0.02 2.28 16 14 N -0.99 -18.99 3.29 -113.52 -0.37 -19.36 16 15 S 2.72 51.92 5.84 -107.50 -0.63 51.30 16 16 O -0.96 -19.95 16.73 -57.17 -0.96 -20.91 16 17 O -0.96 -19.26 16.55 -57.17 -0.95 -20.20 16 18 C -0.56 -10.14 7.14 -17.67 -0.13 -10.27 16 19 C 0.08 1.21 11.37 -16.76 -0.19 1.02 16 20 N -0.45 -6.07 3.13 -113.75 -0.36 -6.43 16 21 C 0.20 2.99 7.65 -155.25 -1.19 1.81 16 22 N -0.41 -7.44 11.24 -9.83 -0.11 -7.55 16 23 C -0.03 -0.33 6.33 -27.51 -0.17 -0.51 16 24 C -0.13 -0.85 5.96 -26.45 -0.16 -1.01 16 25 C -0.14 -0.95 5.94 -26.52 -0.16 -1.10 16 26 C 0.10 0.85 6.98 -3.92 -0.03 0.82 16 27 C 0.12 2.59 5.60 -3.71 -0.02 2.57 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 2.36 6.05 -51.93 -0.31 2.05 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.37 7.13 -51.93 -0.37 1.00 16 35 H 0.19 2.57 8.06 -52.49 -0.42 2.14 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 40 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.49 7.13 -51.93 -0.37 1.12 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -33.94 367.84 -12.11 -46.06 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.93 Total: 0.95 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.95 Total: -21.13 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.21 Total: -57.15 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.90 Total: -41.11 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 51.92 SS G_CDS: -0.63 Total: 51.30 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.94 -12.11 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849419913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.714 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds