Wall clock time and date at job start Tue Mar 31 2020 22:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00160 * 2 1 4 4 H 1.48495 * 109.47131 * 239.99435 * 3 2 1 5 5 H 1.48497 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46953 * 119.99471 * 3 2 1 7 7 C 1.37883 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99714 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52550 * 300.07481 * 9 7 2 11 11 C 1.53033 * 109.50179 * 60.15548 * 9 7 2 12 12 C 1.53041 * 109.53898 * 181.31603 * 11 9 7 13 13 C 1.53192 * 109.31320 * 298.63305 * 12 11 9 14 14 N 1.46927 * 108.77318 * 54.63839 * 13 12 11 15 15 S 1.65600 * 120.63168 * 126.37031 * 14 13 12 16 16 O 1.42094 * 106.40148 * 23.55949 * 15 14 13 17 17 O 1.42101 * 106.40004 * 156.48262 * 15 14 13 18 18 C 1.76197 * 107.21611 * 270.01652 * 15 14 13 19 19 C 1.34856 * 125.96971 * 269.71587 * 18 15 14 20 20 N 1.36312 * 106.68902 * 179.88569 * 19 18 15 21 21 C 1.35409 * 107.40174 * 0.42063 * 20 19 18 22 22 N 1.30094 * 108.63091 * 359.68999 * 21 20 19 23 23 C 1.51048 * 123.98584 * 179.67122 * 21 20 19 24 24 C 1.53397 * 108.20669 * 344.05385 * 23 21 20 25 25 C 1.53150 * 109.24084 * 48.82399 * 24 23 21 26 26 C 1.46481 * 127.77454 * 180.22450 * 20 19 18 27 27 C 1.46926 * 118.73580 * 306.38910 * 14 13 12 28 28 H 0.97003 * 120.00041 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.45957 * 61.30018 * 11 9 7 30 30 H 1.09004 * 109.45285 * 301.33296 * 11 9 7 31 31 H 1.09005 * 109.49689 * 178.68550 * 12 11 9 32 32 H 1.09002 * 109.50075 * 58.58639 * 12 11 9 33 33 H 1.08997 * 109.58972 * 294.84829 * 13 12 11 34 34 H 1.09000 * 109.58650 * 174.42277 * 13 12 11 35 35 H 1.07997 * 126.64978 * 359.97438 * 19 18 15 36 36 H 1.09000 * 109.71381 * 103.72982 * 23 21 20 37 37 H 1.09000 * 109.71643 * 224.32973 * 23 21 20 38 38 H 1.08997 * 109.50895 * 168.75234 * 24 23 21 39 39 H 1.09005 * 109.51091 * 288.89213 * 24 23 21 40 40 H 1.09005 * 109.46569 * 50.51885 * 25 24 23 41 41 H 1.08999 * 109.47160 * 170.50559 * 25 24 23 42 42 H 1.09001 * 109.58404 * 43.32206 * 26 20 19 43 43 H 1.08998 * 109.58366 * 282.90736 * 26 20 19 44 44 H 1.09006 * 109.58406 * 173.39827 * 27 14 13 45 45 H 1.09002 * 109.59019 * 293.81816 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6226 -2.5570 0.8893 11 6 0.3743 -2.5829 -1.2510 12 6 -0.4162 -3.8933 -1.2355 13 6 0.5599 -5.0739 -1.2491 14 7 1.5000 -4.9231 -0.1301 15 16 1.7145 -6.1487 0.9628 16 8 1.3330 -7.3472 0.3016 17 8 2.9993 -5.9533 1.5377 18 6 0.5468 -5.9019 2.2589 19 6 0.7514 -5.1868 3.3838 20 7 -0.4031 -5.2537 4.1055 21 6 -1.2756 -6.0156 3.4042 22 7 -0.7004 -6.3981 2.3018 23 6 -2.6758 -6.3401 3.8685 24 6 -2.7698 -6.0226 5.3663 25 6 -2.2041 -4.6225 5.6219 26 6 -0.6872 -4.6360 5.4030 27 6 2.2459 -3.6641 0.0011 28 1 -0.4850 0.8401 -0.0004 29 1 1.0053 -2.5500 -2.1392 30 1 -0.3182 -1.7412 -1.2662 31 1 -1.0577 -3.9416 -2.1154 32 1 -1.0288 -3.9380 -0.3351 33 1 1.1100 -5.0825 -2.1900 34 1 0.0067 -6.0066 -1.1384 35 1 1.6542 -4.6618 3.6587 36 1 -3.3954 -5.7338 3.3183 37 1 -2.8826 -7.3973 3.7024 38 1 -3.8128 -6.0567 5.6809 39 1 -2.1944 -6.7564 5.9308 40 1 -2.6642 -3.9136 4.9335 41 1 -2.4204 -4.3250 6.6479 42 1 -0.3076 -3.6143 5.4122 43 1 -0.2090 -5.2127 6.1947 44 1 2.8052 -3.6665 0.9367 45 1 2.9336 -3.5576 -0.8378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849419913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:43 Heat of formation + Delta-G solvation = -50.390109 kcal Electronic energy + Delta-G solvation = -28847.482175 eV Core-core repulsion = 24991.140181 eV Total energy + Delta-G solvation = -3856.341994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.49498 -39.30954 -38.34322 -37.60165 -36.95815 -35.19153 -34.38721 -32.72443 -31.86765 -31.07839 -29.72097 -27.02075 -25.53461 -25.16478 -23.46749 -23.37206 -23.21708 -21.08566 -20.14306 -19.71630 -18.96578 -18.44133 -18.05460 -17.26569 -17.07514 -16.91667 -16.51444 -15.61419 -15.34668 -15.22632 -15.13699 -15.08110 -14.82408 -14.73118 -14.46401 -14.43109 -14.26037 -13.83448 -13.28071 -13.20416 -13.03590 -12.87604 -12.77340 -12.68869 -12.66707 -12.53177 -12.13220 -12.08172 -11.93859 -11.88517 -11.79004 -11.60748 -11.26341 -11.08421 -10.82763 -10.76131 -10.40562 -9.90649 -9.72920 -8.05598 -6.20126 -0.58978 0.55535 1.44854 1.45849 1.47144 1.53131 1.63558 2.10505 2.46389 2.74515 3.02049 3.21450 3.44765 3.55331 3.64278 3.75053 3.84576 3.94037 4.17991 4.25351 4.25958 4.34908 4.38533 4.42773 4.58124 4.61084 4.78939 4.81245 4.81315 4.87879 4.88800 4.95023 5.02075 5.08536 5.10233 5.19389 5.24184 5.28326 5.36569 5.55963 5.66381 5.72593 5.98793 6.00835 6.16663 6.40326 6.69790 6.91135 7.47937 8.97877 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.004680 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.512760 B = 5981.145716 C = 7409.584534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.019 3.981 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.042 3.958 10 H -0.005 1.005 11 C -0.103 4.103 12 C -0.122 4.122 13 C 0.125 3.875 14 N -0.990 5.990 15 S 2.738 3.262 16 O -0.978 6.978 17 O -0.977 6.977 18 C -0.587 4.587 19 C 0.071 3.929 20 N -0.446 5.446 21 C 0.203 3.797 22 N -0.453 5.453 23 C -0.038 4.038 24 C -0.117 4.117 25 C -0.133 4.133 26 C 0.083 3.917 27 C 0.134 3.866 28 H 0.259 0.741 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.209 0.791 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 -9.510 12.266 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.180 4.180 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.013 0.987 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.001 3.999 14 N -0.829 5.829 15 S 2.827 3.173 16 O -0.968 6.968 17 O -0.967 6.967 18 C -0.798 4.798 19 C -0.072 4.072 20 N -0.125 5.125 21 C -0.064 4.064 22 N -0.171 5.171 23 C -0.077 4.077 24 C -0.155 4.155 25 C -0.171 4.171 26 C -0.037 4.037 27 C 0.009 3.991 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.226 0.774 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.247 -10.498 11.755 16.954 hybrid contribution 0.341 2.058 0.712 2.204 sum -5.906 -8.440 12.467 16.172 Atomic orbital electron populations 1.70026 1.07168 1.27019 1.51230 1.25649 0.95520 1.02082 0.94763 0.85725 0.78404 0.79290 0.78891 1.19682 1.21353 1.19653 1.21468 0.93357 0.91599 1.50751 0.92218 1.18871 0.93153 0.91730 0.94048 0.98675 1.21394 0.98786 0.96031 0.97894 1.21854 0.97659 0.95579 1.01042 1.21528 0.90608 0.98711 0.89085 1.57586 1.54718 1.31082 1.39509 1.00434 0.72446 0.72289 0.72134 1.93477 1.84414 1.44710 1.74232 1.93524 1.37375 1.86475 1.79375 1.33323 1.10849 1.17301 1.18363 1.22868 0.92719 0.99779 0.91879 1.45953 1.10539 1.37224 1.18806 1.24482 0.96831 0.95638 0.89403 1.69999 1.04333 1.22933 1.19832 1.20533 0.85104 1.04267 0.97775 1.21706 1.04406 0.96416 0.92981 1.21980 0.91219 0.98491 1.05378 1.22629 1.00165 1.00125 0.80736 1.21611 0.93875 0.81701 1.01882 0.93180 0.94405 0.92081 0.90236 0.94369 0.89496 0.89318 0.77430 0.88539 0.87682 0.87010 0.90462 0.91617 0.85723 0.87934 0.86783 0.90436 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.22 11.32 21.45 0.24 -50.97 16 2 C 0.02 1.00 5.30 84.66 0.45 1.45 16 3 Si 0.95 42.13 29.54 68.60 2.03 44.16 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.53 -28.12 8.56 25.60 0.22 -27.90 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 10 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 11 C -0.10 -4.76 4.96 30.62 0.15 -4.60 16 12 C -0.12 -4.74 6.08 30.67 0.19 -4.55 16 13 C 0.13 4.47 6.38 86.36 0.55 5.02 16 14 N -0.99 -38.20 3.29 -513.06 -1.69 -39.89 16 15 S 2.74 105.73 5.84 -56.49 -0.33 105.40 16 16 O -0.98 -41.22 16.73 -128.00 -2.14 -43.36 16 17 O -0.98 -39.37 16.55 -128.00 -2.12 -41.49 16 18 C -0.59 -21.74 7.14 83.54 0.60 -21.15 16 19 C 0.07 2.26 11.37 83.22 0.95 3.20 16 20 N -0.45 -11.67 3.13 -513.80 -1.61 -13.28 16 21 C 0.20 5.88 7.65 138.24 1.06 6.94 16 22 N -0.45 -16.73 11.24 -185.01 -2.08 -18.81 16 23 C -0.04 -0.69 6.33 30.09 0.19 -0.50 16 24 C -0.12 -1.22 5.96 30.78 0.18 -1.04 16 25 C -0.13 -1.46 5.94 30.73 0.18 -1.27 16 26 C 0.08 1.28 6.98 86.47 0.60 1.88 16 27 C 0.13 5.58 5.60 86.36 0.48 6.06 16 28 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 3.22 6.05 -2.38 -0.01 3.20 16 31 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.09 3.02 7.13 -2.39 -0.02 3.01 16 35 H 0.21 5.57 8.06 -2.91 -0.02 5.54 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.75 8.12 -2.38 -0.02 0.73 16 40 H 0.07 0.94 8.12 -2.38 -0.02 0.93 16 41 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 3.14 7.13 -2.38 -0.02 3.12 16 45 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -74.61 367.84 -0.94 -75.55 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.98 Total: 17.16 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 5.78 Total: -34.45 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -5.14 Total: -122.96 kcal Atomic # 8 Polarization: -80.59 SS G_CDS: -4.26 Total: -84.85 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 105.73 SS G_CDS: -0.33 Total: 105.40 kcal Total: -74.61 -0.94 -75.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849419913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.159 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds