Wall clock time and date at job start Tue Mar 31 2020 22:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00134 * 2 1 4 4 H 1.48501 * 109.46795 * 269.99667 * 3 2 1 5 5 H 1.48494 * 109.47159 * 29.99607 * 3 2 1 6 6 H 1.48494 * 109.46936 * 149.99868 * 3 2 1 7 7 C 1.37882 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99955 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50095 * 60.06455 * 9 7 2 11 11 C 1.53043 * 109.49854 * 299.99561 * 9 7 2 12 12 C 1.53035 * 109.53676 * 178.65378 * 11 9 7 13 13 C 1.53189 * 109.31711 * 61.36642 * 12 11 9 14 14 N 1.46935 * 108.77285 * 305.36542 * 13 12 11 15 15 S 1.65601 * 120.62863 * 233.58529 * 14 13 12 16 16 O 1.42104 * 106.40000 * 336.45955 * 15 14 13 17 17 O 1.42095 * 106.39888 * 203.54081 * 15 14 13 18 18 C 1.76196 * 107.21994 * 89.99736 * 15 14 13 19 19 C 1.34856 * 125.96556 * 150.27969 * 18 15 14 20 20 N 1.36309 * 106.68970 * 180.10577 * 19 18 15 21 21 C 1.35427 * 107.39879 * 359.67950 * 20 19 18 22 22 N 1.30087 * 108.62982 * 0.15783 * 21 20 19 23 23 C 1.51044 * 123.98075 * 180.11110 * 21 20 19 24 24 C 1.53403 * 108.21151 * 344.06350 * 23 21 20 25 25 C 1.53152 * 109.23403 * 48.82176 * 24 23 21 26 26 C 1.46476 * 127.77880 * 179.97438 * 20 19 18 27 27 C 1.46924 * 118.74019 * 53.85865 * 14 13 12 28 28 H 0.97002 * 119.99394 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.45772 * 58.62924 * 11 9 7 30 30 H 1.09005 * 109.44479 * 298.66896 * 11 9 7 31 31 H 1.09000 * 109.49714 * 301.41026 * 12 11 9 32 32 H 1.08998 * 109.49602 * 181.31713 * 12 11 9 33 33 H 1.08999 * 109.58895 * 185.57613 * 13 12 11 34 34 H 1.08997 * 109.58885 * 65.14814 * 13 12 11 35 35 H 1.08004 * 126.65159 * 359.97438 * 19 18 15 36 36 H 1.09000 * 109.71148 * 224.39201 * 23 21 20 37 37 H 1.08998 * 109.74988 * 103.76439 * 23 21 20 38 38 H 1.08994 * 109.51232 * 288.89494 * 24 23 21 39 39 H 1.09002 * 109.50811 * 168.74251 * 24 23 21 40 40 H 1.09000 * 109.46820 * 170.50343 * 25 24 23 41 41 H 1.08996 * 109.47040 * 50.51662 * 25 24 23 42 42 H 1.09002 * 109.57802 * 282.36653 * 26 20 19 43 43 H 1.09004 * 109.58028 * 42.77760 * 26 20 19 44 44 H 1.08997 * 109.58703 * 65.92213 * 27 14 13 45 45 H 1.08998 * 109.58598 * 186.35453 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6254 -2.5581 -0.8901 11 6 0.3705 -2.5806 1.2496 12 6 -0.4205 -3.8906 1.2337 13 6 0.5549 -5.0717 1.2519 14 7 1.4986 -4.9230 0.1355 15 16 1.7166 -6.1507 -0.9542 16 8 1.3326 -7.3479 -0.2920 17 8 3.0033 -5.9566 -1.5251 18 6 0.5532 -5.9064 -2.2548 19 6 0.7166 -6.2719 -3.5425 20 7 -0.4149 -5.8954 -4.2029 21 6 -1.2391 -5.3174 -3.2970 22 7 -0.6534 -5.3289 -2.1355 23 6 -2.6046 -4.7643 -3.6301 24 6 -2.6998 -4.6076 -5.1532 25 6 -2.2352 -5.9037 -5.8238 26 6 -0.7250 -6.0706 -5.6237 27 6 2.2496 -3.6666 0.0079 28 1 -0.4849 0.8401 -0.0004 29 1 -0.3216 -1.7386 1.2616 30 1 0.9991 -2.5467 2.1396 31 1 -1.0304 -3.9364 0.3315 32 1 -1.0647 -3.9373 2.1117 33 1 0.0016 -6.0043 1.1410 34 1 1.1023 -5.0791 2.1945 35 1 1.5779 -6.7650 -3.9685 36 1 -2.7348 -3.7936 -3.1518 37 1 -3.3754 -5.4520 -3.2824 38 1 -2.0636 -3.7831 -5.4748 39 1 -3.7328 -4.4024 -5.4341 40 1 -2.4578 -5.8611 -6.8900 41 1 -2.7563 -6.7507 -5.3775 42 1 -0.1940 -5.3197 -6.2087 43 1 -0.4219 -7.0675 -5.9435 44 1 2.9322 -3.5617 0.8512 45 1 2.8148 -3.6718 -0.9240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849419914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:47 Heat of formation + Delta-G solvation = -26.074621 kcal Electronic energy + Delta-G solvation = -28880.649245 eV Core-core repulsion = 25025.361650 eV Total energy + Delta-G solvation = -3855.287595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.39388 -37.49757 -36.83387 -36.77618 -35.44722 -33.43882 -33.17715 -30.90773 -30.13710 -29.92201 -28.74475 -24.99292 -24.70969 -23.47306 -22.50515 -22.16199 -21.48330 -19.41289 -19.16372 -18.14225 -17.61968 -16.83481 -16.36192 -16.01287 -15.97027 -15.46881 -14.63551 -14.57562 -14.41119 -14.16384 -13.92729 -13.73461 -13.65003 -13.31312 -13.01594 -12.61596 -12.50370 -12.23959 -12.04070 -11.72006 -11.58996 -11.52649 -11.44511 -11.36282 -11.19402 -11.13781 -10.93219 -10.69385 -10.63726 -10.10440 -10.00418 -9.81101 -9.79965 -9.61219 -9.21551 -8.70499 -8.64825 -8.33500 -7.98873 -5.93134 -3.99921 0.92519 1.72587 2.55645 2.79624 3.32925 3.33081 3.39823 3.44280 4.02323 4.18778 4.24557 4.32291 4.37768 4.47691 4.70543 4.85849 4.93818 4.98163 5.10860 5.26682 5.33085 5.35975 5.41361 5.49297 5.55701 5.76017 5.84177 5.94644 6.03556 6.06747 6.24973 6.33517 6.46417 6.52956 6.66558 6.78306 6.87814 7.01544 7.10169 7.21953 7.43886 7.62284 7.80946 7.89877 8.09785 8.22509 8.50725 9.04177 9.63970 11.11665 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010348 B = 0.004697 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.151246 B = 5960.134697 C = 7387.121787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.042 3.958 10 H 0.033 0.967 11 C -0.106 4.106 12 C -0.134 4.134 13 C 0.132 3.868 14 N -0.978 5.978 15 S 2.723 3.277 16 O -0.967 6.967 17 O -0.964 6.964 18 C -0.548 4.548 19 C 0.056 3.944 20 N -0.451 5.451 21 C 0.211 3.789 22 N -0.399 5.399 23 C -0.035 4.035 24 C -0.127 4.127 25 C -0.135 4.135 26 C 0.098 3.902 27 C 0.127 3.873 28 H 0.258 0.742 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.188 0.812 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.252 -12.464 -11.165 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.022 3.978 10 H 0.051 0.949 11 C -0.144 4.144 12 C -0.173 4.173 13 C 0.007 3.993 14 N -0.818 5.818 15 S 2.809 3.191 16 O -0.957 6.957 17 O -0.954 6.954 18 C -0.758 4.758 19 C -0.084 4.084 20 N -0.133 5.133 21 C -0.055 4.055 22 N -0.115 5.115 23 C -0.074 4.074 24 C -0.165 4.165 25 C -0.172 4.172 26 C -0.025 4.025 27 C 0.003 3.997 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.205 0.795 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.169 -12.730 -10.547 17.645 hybrid contribution 0.326 1.014 -1.315 1.692 sum -5.843 -11.716 -11.862 17.667 Atomic orbital electron populations 1.69902 1.05800 1.26144 1.50753 1.24922 0.94800 0.98852 0.95180 0.86647 0.79972 0.83699 0.77959 1.20904 1.21355 1.19887 1.21164 0.92995 0.90574 1.50560 0.92557 1.19026 0.92832 0.90684 0.95265 0.94922 1.21529 0.99226 0.95513 0.98177 1.21989 0.97713 0.96423 1.01183 1.21358 0.90641 0.99137 0.88200 1.57320 1.54035 1.31673 1.38775 1.01095 0.72719 0.72890 0.72353 1.93542 1.84381 1.44528 1.73268 1.93562 1.36300 1.86302 1.79199 1.33717 1.11494 1.17057 1.13566 1.22304 0.91728 1.02459 0.91934 1.45632 1.14282 1.43685 1.09665 1.23633 0.96182 1.01080 0.84605 1.70149 1.03685 1.15483 1.22225 1.20253 0.88420 1.02687 0.96033 1.21702 1.03014 0.97435 0.94358 1.21910 0.93219 0.99536 1.02561 1.22114 0.98145 1.03608 0.78585 1.21898 0.94415 0.82290 1.01051 0.93189 0.89029 0.94953 0.91258 0.93166 0.90697 0.91917 0.79521 0.87837 0.89111 0.90811 0.89722 0.89130 0.90514 0.89211 0.88895 0.91953 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 11.31 55.43 0.63 -24.41 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -14.00 8.57 -34.44 -0.29 -14.30 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.04 2.26 -91.42 -0.21 0.83 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.63 16 12 C -0.13 -2.65 6.08 -26.62 -0.16 -2.81 16 13 C 0.13 2.43 6.38 -3.71 -0.02 2.41 16 14 N -0.98 -19.38 3.28 -113.27 -0.37 -19.75 16 15 S 2.72 51.67 5.82 -107.50 -0.63 51.05 16 16 O -0.97 -19.43 16.73 -57.17 -0.96 -20.39 16 17 O -0.96 -19.46 16.66 -57.17 -0.95 -20.41 16 18 C -0.55 -9.85 7.09 -17.67 -0.13 -9.98 16 19 C 0.06 0.83 11.50 -16.76 -0.19 0.64 16 20 N -0.45 -5.81 3.13 -113.76 -0.36 -6.17 16 21 C 0.21 3.16 7.65 -155.24 -1.19 1.97 16 22 N -0.40 -7.36 11.24 -9.83 -0.11 -7.47 16 23 C -0.04 -0.38 6.33 -27.51 -0.17 -0.56 16 24 C -0.13 -0.97 5.96 -26.44 -0.16 -1.12 16 25 C -0.13 -0.82 5.94 -26.53 -0.16 -0.98 16 26 C 0.10 0.75 6.98 -3.93 -0.03 0.73 16 27 C 0.13 2.78 5.63 -3.48 -0.02 2.76 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.30 7.13 -51.93 -0.37 0.93 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.19 2.07 8.06 -52.48 -0.42 1.65 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.48 8.12 -51.93 -0.42 0.05 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.07 1.59 7.12 -51.93 -0.37 1.22 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -34.69 368.01 -12.11 -46.81 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.93 Total: 0.39 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -2.96 Total: -21.39 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.21 Total: -57.79 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.91 Total: -40.79 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 51.67 SS G_CDS: -0.63 Total: 51.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.69 -12.11 -46.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849419914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.731 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds