Wall clock time and date at job start Tue Mar 31 2020 22:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00134 * 2 1 4 4 H 1.48501 * 109.46795 * 269.99667 * 3 2 1 5 5 H 1.48494 * 109.47159 * 29.99607 * 3 2 1 6 6 H 1.48494 * 109.46936 * 149.99868 * 3 2 1 7 7 C 1.37882 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99955 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50095 * 60.06455 * 9 7 2 11 11 C 1.53043 * 109.49854 * 299.99561 * 9 7 2 12 12 C 1.53035 * 109.53676 * 178.65378 * 11 9 7 13 13 C 1.53189 * 109.31711 * 61.36642 * 12 11 9 14 14 N 1.46935 * 108.77285 * 305.36542 * 13 12 11 15 15 S 1.65601 * 120.62863 * 233.58529 * 14 13 12 16 16 O 1.42104 * 106.40000 * 336.45955 * 15 14 13 17 17 O 1.42095 * 106.39888 * 203.54081 * 15 14 13 18 18 C 1.76196 * 107.21994 * 89.99736 * 15 14 13 19 19 C 1.34856 * 125.96556 * 150.27969 * 18 15 14 20 20 N 1.36309 * 106.68970 * 180.10577 * 19 18 15 21 21 C 1.35427 * 107.39879 * 359.67950 * 20 19 18 22 22 N 1.30087 * 108.62982 * 0.15783 * 21 20 19 23 23 C 1.51044 * 123.98075 * 180.11110 * 21 20 19 24 24 C 1.53403 * 108.21151 * 344.06350 * 23 21 20 25 25 C 1.53152 * 109.23403 * 48.82176 * 24 23 21 26 26 C 1.46476 * 127.77880 * 179.97438 * 20 19 18 27 27 C 1.46924 * 118.74019 * 53.85865 * 14 13 12 28 28 H 0.97002 * 119.99394 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.45772 * 58.62924 * 11 9 7 30 30 H 1.09005 * 109.44479 * 298.66896 * 11 9 7 31 31 H 1.09000 * 109.49714 * 301.41026 * 12 11 9 32 32 H 1.08998 * 109.49602 * 181.31713 * 12 11 9 33 33 H 1.08999 * 109.58895 * 185.57613 * 13 12 11 34 34 H 1.08997 * 109.58885 * 65.14814 * 13 12 11 35 35 H 1.08004 * 126.65159 * 359.97438 * 19 18 15 36 36 H 1.09000 * 109.71148 * 224.39201 * 23 21 20 37 37 H 1.08998 * 109.74988 * 103.76439 * 23 21 20 38 38 H 1.08994 * 109.51232 * 288.89494 * 24 23 21 39 39 H 1.09002 * 109.50811 * 168.74251 * 24 23 21 40 40 H 1.09000 * 109.46820 * 170.50343 * 25 24 23 41 41 H 1.08996 * 109.47040 * 50.51662 * 25 24 23 42 42 H 1.09002 * 109.57802 * 282.36653 * 26 20 19 43 43 H 1.09004 * 109.58028 * 42.77760 * 26 20 19 44 44 H 1.08997 * 109.58703 * 65.92213 * 27 14 13 45 45 H 1.08998 * 109.58598 * 186.35453 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6254 -2.5581 -0.8901 11 6 0.3705 -2.5806 1.2496 12 6 -0.4205 -3.8906 1.2337 13 6 0.5549 -5.0717 1.2519 14 7 1.4986 -4.9230 0.1355 15 16 1.7166 -6.1507 -0.9542 16 8 1.3326 -7.3479 -0.2920 17 8 3.0033 -5.9566 -1.5251 18 6 0.5532 -5.9064 -2.2548 19 6 0.7166 -6.2719 -3.5425 20 7 -0.4149 -5.8954 -4.2029 21 6 -1.2391 -5.3174 -3.2970 22 7 -0.6534 -5.3289 -2.1355 23 6 -2.6046 -4.7643 -3.6301 24 6 -2.6998 -4.6076 -5.1532 25 6 -2.2352 -5.9037 -5.8238 26 6 -0.7250 -6.0706 -5.6237 27 6 2.2496 -3.6666 0.0079 28 1 -0.4849 0.8401 -0.0004 29 1 -0.3216 -1.7386 1.2616 30 1 0.9991 -2.5467 2.1396 31 1 -1.0304 -3.9364 0.3315 32 1 -1.0647 -3.9373 2.1117 33 1 0.0016 -6.0043 1.1410 34 1 1.1023 -5.0791 2.1945 35 1 1.5779 -6.7650 -3.9685 36 1 -2.7348 -3.7936 -3.1518 37 1 -3.3754 -5.4520 -3.2824 38 1 -2.0636 -3.7831 -5.4748 39 1 -3.7328 -4.4024 -5.4341 40 1 -2.4578 -5.8611 -6.8900 41 1 -2.7563 -6.7507 -5.3775 42 1 -0.1940 -5.3197 -6.2087 43 1 -0.4219 -7.0675 -5.9435 44 1 2.9322 -3.5617 0.8512 45 1 2.8148 -3.6718 -0.9240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849419914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:47 Heat of formation + Delta-G solvation = -49.128516 kcal Electronic energy + Delta-G solvation = -28881.648937 eV Core-core repulsion = 25025.361650 eV Total energy + Delta-G solvation = -3856.287287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.46210 -39.23022 -38.32171 -37.58894 -36.99833 -35.16563 -34.37335 -32.66362 -31.79865 -31.05464 -29.71119 -26.99792 -25.51318 -25.14521 -23.44078 -23.28269 -23.24037 -21.01745 -20.16263 -19.67464 -18.96114 -18.31897 -17.98741 -17.32113 -17.13159 -16.88735 -16.52329 -15.58693 -15.35358 -15.16416 -15.14708 -15.04162 -14.79048 -14.71301 -14.46314 -14.36313 -14.21335 -13.79816 -13.34324 -13.22322 -12.98820 -12.87790 -12.76010 -12.66358 -12.63416 -12.49657 -12.13635 -12.07360 -11.94401 -11.83300 -11.73698 -11.57561 -11.13758 -11.02140 -10.80170 -10.70019 -10.37930 -9.82661 -9.70713 -8.02997 -6.17795 -0.53561 0.59422 1.42971 1.44157 1.54329 1.58302 1.65462 1.86398 2.46820 2.70151 3.22916 3.23034 3.50215 3.57590 3.63179 3.75412 3.86184 3.92786 4.17826 4.28520 4.34912 4.35762 4.41070 4.42101 4.64576 4.67933 4.78142 4.83157 4.86797 4.91082 4.92883 4.97607 5.01220 5.08880 5.16379 5.23738 5.24268 5.35282 5.48364 5.60129 5.71097 5.81189 6.02420 6.06500 6.22547 6.43982 6.75475 6.93794 7.49401 9.00353 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010348 B = 0.004697 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.151246 B = 5960.134697 C = 7387.121787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.056 0.944 9 C 0.045 3.955 10 H -0.006 1.006 11 C -0.099 4.099 12 C -0.124 4.124 13 C 0.130 3.870 14 N -0.984 5.984 15 S 2.740 3.260 16 O -0.981 6.981 17 O -0.981 6.981 18 C -0.588 4.588 19 C 0.064 3.936 20 N -0.444 5.444 21 C 0.201 3.799 22 N -0.446 5.446 23 C -0.038 4.038 24 C -0.122 4.122 25 C -0.128 4.128 26 C 0.084 3.916 27 C 0.138 3.862 28 H 0.259 0.741 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.220 0.780 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.071 0.929 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.502 -13.314 -12.799 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.074 0.926 9 C 0.025 3.975 10 H 0.012 0.988 11 C -0.137 4.137 12 C -0.163 4.163 13 C 0.005 3.995 14 N -0.823 5.823 15 S 2.829 3.171 16 O -0.971 6.971 17 O -0.971 6.971 18 C -0.800 4.800 19 C -0.079 4.079 20 N -0.124 5.124 21 C -0.066 4.066 22 N -0.163 5.163 23 C -0.077 4.077 24 C -0.160 4.160 25 C -0.165 4.165 26 C -0.036 4.036 27 C 0.013 3.987 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.237 0.763 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.142 0.858 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.139 0.861 44 H 0.089 0.911 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.409 -13.594 -12.176 19.343 hybrid contribution 0.330 1.271 -0.903 1.594 sum -6.079 -12.323 -13.080 18.971 Atomic orbital electron populations 1.70048 1.07083 1.26864 1.51165 1.25666 0.95600 1.02071 0.94814 0.85659 0.78909 0.79665 0.78003 1.20545 1.20919 1.19172 1.21527 0.93226 0.91959 1.50788 0.92616 1.18902 0.93026 0.91360 0.94219 0.98771 1.21343 0.98630 0.96355 0.97377 1.21855 0.97744 0.95129 1.01553 1.21481 0.90423 0.98837 0.88713 1.57295 1.54267 1.30840 1.39884 1.00354 0.72414 0.72214 0.72110 1.93513 1.84625 1.45007 1.73975 1.93527 1.37714 1.86439 1.79408 1.33347 1.11925 1.20089 1.14661 1.22854 0.92882 1.01028 0.91143 1.45960 1.13040 1.42002 1.11399 1.24298 0.97430 1.00548 0.84355 1.70054 1.04458 1.17104 1.24704 1.20455 0.86861 1.01708 0.98698 1.21715 1.04479 0.98165 0.91646 1.21948 0.91756 0.98404 1.04398 1.22652 0.99726 1.05703 0.75518 1.21605 0.93741 0.82186 1.01155 0.93192 0.92163 0.94822 0.92931 0.90636 0.89396 0.89916 0.76299 0.89858 0.87589 0.91918 0.87228 0.85755 0.90233 0.88025 0.86080 0.91113 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.93 11.31 21.45 0.24 -52.68 16 2 C 0.02 0.97 5.30 84.66 0.45 1.42 16 3 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -29.92 8.57 25.60 0.22 -29.70 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.04 2.32 2.26 -11.31 -0.03 2.29 16 10 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 11 C -0.10 -4.77 4.96 30.62 0.15 -4.61 16 12 C -0.12 -4.97 6.08 30.67 0.19 -4.78 16 13 C 0.13 4.76 6.38 86.36 0.55 5.31 16 14 N -0.98 -39.47 3.28 -512.27 -1.68 -41.16 16 15 S 2.74 104.87 5.82 -56.49 -0.33 104.54 16 16 O -0.98 -39.34 16.73 -128.00 -2.14 -41.48 16 17 O -0.98 -39.80 16.66 -128.00 -2.13 -41.93 16 18 C -0.59 -21.39 7.09 83.54 0.59 -20.79 16 19 C 0.06 1.83 11.50 83.22 0.96 2.78 16 20 N -0.44 -10.80 3.13 -513.82 -1.61 -12.41 16 21 C 0.20 6.01 7.65 138.23 1.06 7.07 16 22 N -0.45 -16.91 11.24 -185.00 -2.08 -18.99 16 23 C -0.04 -0.83 6.33 30.09 0.19 -0.64 16 24 C -0.12 -1.60 5.96 30.78 0.18 -1.42 16 25 C -0.13 -1.10 5.94 30.73 0.18 -0.92 16 26 C 0.08 1.03 6.98 86.47 0.60 1.63 16 27 C 0.14 6.16 5.63 86.51 0.49 6.64 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.06 3.29 6.04 -2.39 -0.01 3.27 16 30 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.09 3.00 7.13 -2.39 -0.02 2.99 16 34 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.22 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 42 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 43 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.07 3.04 7.12 -2.39 -0.02 3.02 16 Total: -1.00 -77.69 368.01 -0.94 -78.63 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.98 Total: 15.26 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 5.79 Total: -35.71 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -5.13 Total: -125.24 kcal Atomic # 8 Polarization: -79.14 SS G_CDS: -4.27 Total: -83.42 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 104.87 SS G_CDS: -0.33 Total: 104.54 kcal Total: -77.69 -0.94 -78.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849419914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.498 kcal (2) G-P(sol) polarization free energy of solvation -77.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds