Wall clock time and date at job start Tue Mar 31 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86798 * 120.00219 * 2 1 4 4 H 1.48502 * 109.47054 * 240.00386 * 3 2 1 5 5 H 1.48497 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47468 * 119.99928 * 3 2 1 7 7 C 1.38634 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99850 * 180.02562 * 7 2 1 9 9 O 1.34805 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.35778 * 117.00088 * 174.95584 * 9 7 2 11 11 C 1.38744 * 120.08865 * 5.43245 * 10 9 7 12 12 C 1.38341 * 119.97714 * 180.02562 * 11 10 9 13 13 F 1.35103 * 119.92489 * 179.97438 * 12 11 10 14 14 C 1.38550 * 120.15207 * 0.02562 * 12 11 10 15 15 C 1.38199 * 120.17080 * 359.73747 * 14 12 11 16 16 C 1.38695 * 120.02544 * 0.51457 * 15 14 12 17 17 N 1.40132 * 120.07647 * 179.76933 * 16 15 14 18 18 C 1.34779 * 120.00094 * 34.59103 * 17 16 15 19 19 O 1.21596 * 120.00068 * 355.63019 * 18 17 16 20 20 N 1.34778 * 120.00005 * 175.62851 * 18 17 16 21 21 C 1.46497 * 119.99813 * 180.27277 * 20 18 17 22 22 C 1.53005 * 109.46755 * 179.72656 * 21 20 18 23 23 H 1.09004 * 109.50327 * 294.91374 * 22 21 20 24 24 C 1.53102 * 109.50597 * 174.78614 * 22 21 20 25 25 O 1.43010 * 109.25755 * 183.21640 * 24 22 21 26 26 C 1.43016 * 113.73966 * 58.67118 * 25 24 22 27 27 C 1.53098 * 109.25435 * 301.32830 * 26 25 24 28 28 N 1.47005 * 109.50901 * 55.00446 * 22 21 20 29 29 H 0.97002 * 119.99819 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00762 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.90952 * 179.97438 * 14 12 11 32 32 H 1.08006 * 119.98637 * 180.27890 * 15 14 12 33 33 H 0.96997 * 120.00109 * 214.59561 * 17 16 15 34 34 H 0.97003 * 119.99672 * 0.02562 * 20 18 17 35 35 H 1.08995 * 109.47562 * 299.73008 * 21 20 18 36 36 H 1.09006 * 109.46684 * 59.72995 * 21 20 18 37 37 H 1.09005 * 109.50650 * 303.15494 * 24 22 21 38 38 H 1.09005 * 109.50722 * 63.27862 * 24 22 21 39 39 H 1.09000 * 109.50647 * 181.39161 * 26 25 24 40 40 H 1.08997 * 109.54196 * 61.28536 * 26 25 24 41 41 H 1.08997 * 109.50549 * 296.90564 * 27 26 25 42 42 H 1.09006 * 109.49992 * 176.78068 * 27 26 25 43 43 H 1.00905 * 111.00398 * 54.77030 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1034 1.6963 -1.2126 5 1 1.2848 2.7464 -0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0702 -3.5045 -0.1074 11 6 3.4561 -3.4397 -0.0970 12 6 4.2031 -4.5989 -0.2066 13 9 5.5525 -4.5346 -0.1967 14 6 3.5705 -5.8257 -0.3274 15 6 2.1904 -5.8978 -0.3337 16 6 1.4344 -4.7397 -0.2295 17 7 0.0349 -4.8112 -0.2406 18 6 -0.5907 -5.8619 0.3262 19 8 0.0591 -6.7859 0.7764 20 7 -1.9365 -5.8885 0.3939 21 6 -2.6162 -7.0278 1.0153 22 6 -4.1294 -6.8063 0.9682 23 1 -4.3906 -5.9458 1.5841 24 6 -4.8451 -8.0517 1.4983 25 8 -6.2587 -7.8686 1.3821 26 6 -6.7000 -7.6284 0.0432 27 6 -6.0032 -6.3788 -0.5016 28 7 -4.5468 -6.5614 -0.4200 29 1 -0.4850 0.8401 -0.0004 30 1 3.9514 -2.4846 -0.0032 31 1 4.1575 -6.7281 -0.4132 32 1 1.7004 -6.8561 -0.4235 33 1 -0.4835 -4.1046 -0.6561 34 1 -2.4548 -5.1516 0.0344 35 1 -2.3654 -7.9399 0.4739 36 1 -2.2947 -7.1209 2.0527 37 1 -4.5416 -8.9216 0.9157 38 1 -4.5826 -8.2044 2.5452 39 1 -7.7792 -7.4750 0.0377 40 1 -6.4511 -8.4858 -0.5821 41 1 -6.2952 -5.5118 0.0909 42 1 -6.2930 -6.2245 -1.5410 43 1 -4.2413 -7.3077 -1.0265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859662325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:13 Heat of formation + Delta-G solvation = -108.442130 kcal Electronic energy + Delta-G solvation = -28983.651145 eV Core-core repulsion = 24558.578650 eV Total energy + Delta-G solvation = -4425.072494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.21391 -40.36897 -39.86983 -38.69096 -36.50225 -35.70640 -33.97814 -33.93233 -32.38470 -31.80899 -29.37840 -28.39662 -27.07686 -25.70041 -25.42103 -23.09323 -22.30094 -21.58261 -21.36396 -20.38062 -18.33590 -18.19174 -17.68899 -16.93491 -16.56232 -16.37515 -15.94883 -15.73193 -15.41504 -15.20864 -15.12633 -14.93801 -14.67872 -14.59189 -14.27026 -13.77366 -13.58470 -13.46835 -13.25579 -13.18655 -12.79519 -12.53338 -12.25946 -12.09725 -11.72526 -11.63514 -11.58616 -11.42214 -11.30781 -10.91732 -10.71141 -10.58468 -10.55272 -9.84505 -9.73131 -9.41220 -8.93909 -8.91486 -8.66049 -7.83243 -7.05656 -6.57819 -4.15724 1.89757 2.16590 2.90544 3.08959 3.09559 3.11954 3.40639 3.50619 3.71724 3.87190 4.26833 4.39542 4.49521 4.58523 4.64185 4.68776 4.81597 4.89987 4.95982 4.98611 5.15853 5.16737 5.21863 5.32313 5.50976 5.58590 5.64501 5.70158 5.77807 6.07881 6.25738 6.41200 6.56810 6.63774 6.69146 6.74791 6.89539 6.95151 6.97790 7.11664 7.20620 7.38502 7.70869 7.86309 8.34924 8.87472 8.92320 9.50078 10.59070 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.002860 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.092607 B = 9786.421305 C =12088.399693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.168 6.168 10 C 0.157 3.843 11 C -0.259 4.259 12 C 0.127 3.873 13 F -0.152 7.152 14 C -0.229 4.229 15 C -0.050 4.050 16 C 0.079 3.921 17 N -0.664 5.664 18 C 0.704 3.296 19 O -0.591 6.591 20 N -0.736 5.736 21 C 0.151 3.849 22 C 0.038 3.962 23 H 0.101 0.899 24 C 0.031 3.969 25 O -0.378 6.378 26 C 0.019 3.981 27 C 0.022 3.978 28 N -0.676 5.676 29 H 0.272 0.728 30 H 0.142 0.858 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.411 0.589 34 H 0.406 0.594 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -12.257 -1.632 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.071 6.071 10 C 0.100 3.900 11 C -0.279 4.279 12 C 0.107 3.893 13 F -0.131 7.131 14 C -0.249 4.249 15 C -0.071 4.071 16 C -0.016 4.016 17 N -0.310 5.310 18 C 0.404 3.596 19 O -0.470 6.470 20 N -0.392 5.392 21 C 0.026 3.974 22 C -0.072 4.072 23 H 0.119 0.881 24 C -0.048 4.048 25 O -0.296 6.296 26 C -0.060 4.060 27 C -0.108 4.108 28 N -0.306 5.306 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.247 0.753 34 H 0.242 0.758 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.729 -12.176 -1.004 16.260 hybrid contribution 0.094 0.690 -0.395 0.800 sum -10.635 -11.486 -1.399 15.716 Atomic orbital electron populations 1.70004 1.05906 1.28028 1.45441 1.25266 0.95893 0.98799 0.96199 0.85760 0.78748 0.79518 0.79371 1.19376 1.20219 1.19405 1.21300 0.91951 0.80489 1.53156 0.88918 1.83935 1.33844 1.11221 1.78052 1.18833 0.89477 0.87308 0.94349 1.20835 0.93417 0.98405 1.15285 1.17457 0.75905 0.94355 1.01578 1.91407 1.30186 1.97384 1.94129 1.20484 0.94640 0.95779 1.13996 1.20670 0.92097 0.97452 0.96896 1.16651 0.81323 0.91520 1.12093 1.42164 1.05146 1.24437 1.59301 1.15884 0.81776 0.83044 0.78849 1.90866 1.64790 1.37195 1.54141 1.44826 1.04611 1.24571 1.65227 1.21010 0.88551 0.89055 0.98811 1.22526 0.94652 0.99045 0.90999 0.88118 1.23191 0.81654 0.96591 1.03390 1.88092 1.21853 1.92434 1.27236 1.23328 1.00603 0.97690 0.84341 1.22681 0.87359 0.98075 1.02666 1.60801 1.12440 1.50142 1.07223 0.91830 0.84017 0.86015 0.83981 0.75272 0.75811 0.91734 0.90766 0.92641 0.87744 0.88280 0.93123 0.89598 0.89297 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.46 13.67 55.48 0.76 -22.70 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.40 9.49 30.88 0.29 -10.11 16 8 H 0.09 2.31 5.20 -52.48 -0.27 2.03 16 9 O -0.17 -4.40 9.32 0.04 0.00 -4.40 16 10 C 0.16 3.64 6.66 -38.94 -0.26 3.38 16 11 C -0.26 -5.70 9.14 -39.36 -0.36 -6.06 16 12 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 13 F -0.15 -2.94 17.26 2.25 0.04 -2.91 16 14 C -0.23 -4.31 10.02 -39.48 -0.40 -4.70 16 15 C -0.05 -0.99 8.69 -39.43 -0.34 -1.33 16 16 C 0.08 1.66 6.33 -83.44 -0.53 1.13 16 17 N -0.66 -12.37 5.20 -14.07 -0.07 -12.44 16 18 C 0.70 12.22 8.41 -86.92 -0.73 11.49 16 19 O -0.59 -11.75 13.76 5.28 0.07 -11.68 16 20 N -0.74 -9.62 5.39 -65.22 -0.35 -9.98 16 21 C 0.15 1.58 5.30 -4.04 -0.02 1.56 16 22 C 0.04 0.32 2.79 -67.60 -0.19 0.13 16 23 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 24 C 0.03 0.24 6.29 37.21 0.23 0.47 16 25 O -0.38 -3.51 10.83 -35.23 -0.38 -3.89 16 26 C 0.02 0.13 7.01 37.21 0.26 0.39 16 27 C 0.02 0.15 6.76 -3.71 -0.03 0.12 16 28 N -0.68 -5.37 6.03 -106.45 -0.64 -6.01 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.14 3.11 5.64 -52.49 -0.30 2.82 16 31 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 32 H 0.14 2.70 6.19 -52.48 -0.32 2.37 16 33 H 0.41 7.38 8.59 -40.82 -0.35 7.02 16 34 H 0.41 4.95 8.16 -40.82 -0.33 4.62 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.34 2.51 8.79 -39.29 -0.35 2.16 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -30.79 364.22 -7.85 -38.64 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -5.29 Total: 15.37 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.45 Total: -0.20 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.31 Total: -51.14 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.31 Total: -19.97 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.79 -7.85 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859662325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.803 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds