Wall clock time and date at job start Tue Mar 31 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86798 * 120.00219 * 2 1 4 4 H 1.48502 * 109.47054 * 240.00386 * 3 2 1 5 5 H 1.48497 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47468 * 119.99928 * 3 2 1 7 7 C 1.38634 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99850 * 180.02562 * 7 2 1 9 9 O 1.34805 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.35778 * 117.00088 * 174.95584 * 9 7 2 11 11 C 1.38744 * 120.08865 * 5.43245 * 10 9 7 12 12 C 1.38341 * 119.97714 * 180.02562 * 11 10 9 13 13 F 1.35103 * 119.92489 * 179.97438 * 12 11 10 14 14 C 1.38550 * 120.15207 * 0.02562 * 12 11 10 15 15 C 1.38199 * 120.17080 * 359.73747 * 14 12 11 16 16 C 1.38695 * 120.02544 * 0.51457 * 15 14 12 17 17 N 1.40132 * 120.07647 * 179.76933 * 16 15 14 18 18 C 1.34779 * 120.00094 * 34.59103 * 17 16 15 19 19 O 1.21596 * 120.00068 * 355.63019 * 18 17 16 20 20 N 1.34778 * 120.00005 * 175.62851 * 18 17 16 21 21 C 1.46497 * 119.99813 * 180.27277 * 20 18 17 22 22 C 1.53005 * 109.46755 * 179.72656 * 21 20 18 23 23 H 1.09004 * 109.50327 * 294.91374 * 22 21 20 24 24 C 1.53102 * 109.50597 * 174.78614 * 22 21 20 25 25 O 1.43010 * 109.25755 * 183.21640 * 24 22 21 26 26 C 1.43016 * 113.73966 * 58.67118 * 25 24 22 27 27 C 1.53098 * 109.25435 * 301.32830 * 26 25 24 28 28 N 1.47005 * 109.50901 * 55.00446 * 22 21 20 29 29 H 0.97002 * 119.99819 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00762 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.90952 * 179.97438 * 14 12 11 32 32 H 1.08006 * 119.98637 * 180.27890 * 15 14 12 33 33 H 0.96997 * 120.00109 * 214.59561 * 17 16 15 34 34 H 0.97003 * 119.99672 * 0.02562 * 20 18 17 35 35 H 1.08995 * 109.47562 * 299.73008 * 21 20 18 36 36 H 1.09006 * 109.46684 * 59.72995 * 21 20 18 37 37 H 1.09005 * 109.50650 * 303.15494 * 24 22 21 38 38 H 1.09005 * 109.50722 * 63.27862 * 24 22 21 39 39 H 1.09000 * 109.50647 * 181.39161 * 26 25 24 40 40 H 1.08997 * 109.54196 * 61.28536 * 26 25 24 41 41 H 1.08997 * 109.50549 * 296.90564 * 27 26 25 42 42 H 1.09006 * 109.49992 * 176.78068 * 27 26 25 43 43 H 1.00905 * 111.00398 * 54.77030 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1034 1.6963 -1.2126 5 1 1.2848 2.7464 -0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0702 -3.5045 -0.1074 11 6 3.4561 -3.4397 -0.0970 12 6 4.2031 -4.5989 -0.2066 13 9 5.5525 -4.5346 -0.1967 14 6 3.5705 -5.8257 -0.3274 15 6 2.1904 -5.8978 -0.3337 16 6 1.4344 -4.7397 -0.2295 17 7 0.0349 -4.8112 -0.2406 18 6 -0.5907 -5.8619 0.3262 19 8 0.0591 -6.7859 0.7764 20 7 -1.9365 -5.8885 0.3939 21 6 -2.6162 -7.0278 1.0153 22 6 -4.1294 -6.8063 0.9682 23 1 -4.3906 -5.9458 1.5841 24 6 -4.8451 -8.0517 1.4983 25 8 -6.2587 -7.8686 1.3821 26 6 -6.7000 -7.6284 0.0432 27 6 -6.0032 -6.3788 -0.5016 28 7 -4.5468 -6.5614 -0.4200 29 1 -0.4850 0.8401 -0.0004 30 1 3.9514 -2.4846 -0.0032 31 1 4.1575 -6.7281 -0.4132 32 1 1.7004 -6.8561 -0.4235 33 1 -0.4835 -4.1046 -0.6561 34 1 -2.4548 -5.1516 0.0344 35 1 -2.3654 -7.9399 0.4739 36 1 -2.2947 -7.1209 2.0527 37 1 -4.5416 -8.9216 0.9157 38 1 -4.5826 -8.2044 2.5452 39 1 -7.7792 -7.4750 0.0377 40 1 -6.4511 -8.4858 -0.5821 41 1 -6.2952 -5.5118 0.0909 42 1 -6.2930 -6.2245 -1.5410 43 1 -4.2413 -7.3077 -1.0265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859662325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:13 Heat of formation + Delta-G solvation = -131.826395 kcal Electronic energy + Delta-G solvation = -28984.665162 eV Core-core repulsion = 24558.578650 eV Total energy + Delta-G solvation = -4426.086512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.80361 -41.71847 -40.78117 -40.20959 -38.12073 -36.68850 -35.49672 -34.81288 -34.28914 -32.62490 -31.04789 -29.88818 -27.89616 -27.35741 -26.43447 -24.20613 -23.60705 -23.06350 -22.09078 -21.76219 -20.12672 -19.65904 -19.22229 -18.35334 -17.33247 -17.24144 -17.02249 -16.94180 -16.72767 -16.55484 -16.43174 -15.99377 -15.93540 -15.87680 -15.68171 -15.38239 -15.21420 -14.92622 -14.71325 -14.18537 -13.97237 -13.71754 -13.42389 -13.40460 -13.21213 -12.97545 -12.54485 -12.35253 -12.30495 -12.24731 -12.16259 -12.09215 -11.63572 -11.31055 -11.17184 -10.98381 -10.80228 -10.09167 -9.51492 -9.28627 -8.71027 -8.48835 -6.15113 0.24441 0.49515 1.38083 1.46479 1.51719 1.63682 2.09562 2.16007 2.71176 2.81228 3.01351 3.07934 3.19665 3.27573 3.48388 3.72202 3.80928 3.96061 3.97880 4.14093 4.18899 4.20106 4.37799 4.39849 4.47679 4.59646 4.67213 4.72251 4.79365 4.91480 4.97548 5.03695 5.04754 5.25126 5.32391 5.36310 5.48612 5.61004 5.82875 5.94017 5.97762 6.08174 6.12291 6.30928 6.95400 7.00153 7.51149 7.65988 8.71162 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.002860 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.092607 B = 9786.421305 C =12088.399693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.008 4.008 3 Si 1.010 2.990 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.099 0.901 9 O -0.202 6.202 10 C 0.129 3.871 11 C -0.264 4.264 12 C 0.121 3.879 13 F -0.145 7.145 14 C -0.203 4.203 15 C -0.051 4.051 16 C 0.080 3.920 17 N -0.667 5.667 18 C 0.702 3.298 19 O -0.615 6.615 20 N -0.719 5.719 21 C 0.151 3.849 22 C 0.051 3.949 23 H 0.089 0.911 24 C 0.033 3.967 25 O -0.399 6.399 26 C 0.018 3.982 27 C 0.025 3.975 28 N -0.684 5.684 29 H 0.274 0.726 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.412 0.588 34 H 0.412 0.588 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 -13.540 -2.048 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.830 3.170 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.116 0.884 9 O -0.107 6.107 10 C 0.076 3.924 11 C -0.285 4.285 12 C 0.101 3.899 13 F -0.124 7.124 14 C -0.223 4.223 15 C -0.071 4.071 16 C -0.016 4.016 17 N -0.313 5.313 18 C 0.403 3.597 19 O -0.496 6.496 20 N -0.375 5.375 21 C 0.027 3.973 22 C -0.060 4.060 23 H 0.107 0.893 24 C -0.046 4.046 25 O -0.318 6.318 26 C -0.060 4.060 27 C -0.105 4.105 28 N -0.315 5.315 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.248 0.752 34 H 0.248 0.752 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.513 -13.505 -1.427 17.174 hybrid contribution 0.037 0.830 -0.289 0.880 sum -10.476 -12.674 -1.715 16.533 Atomic orbital electron populations 1.70117 1.07500 1.28975 1.47499 1.26361 0.96824 1.02059 0.95545 0.84753 0.77563 0.74918 0.79734 1.18400 1.19467 1.18710 1.21708 0.92516 0.81214 1.53877 0.88408 1.83914 1.34635 1.11782 1.80356 1.19191 0.90162 0.87469 0.95628 1.20916 0.93318 0.99074 1.15205 1.17454 0.76210 0.94249 1.02008 1.91426 1.29513 1.97357 1.94086 1.20883 0.94543 0.96444 1.10449 1.20869 0.92437 0.97258 0.96566 1.16914 0.82629 0.91229 1.10794 1.42202 1.04513 1.24942 1.59690 1.15997 0.82875 0.82288 0.78571 1.90834 1.65656 1.37917 1.55208 1.44810 1.03155 1.25365 1.64187 1.21161 0.89583 0.88211 0.98371 1.22322 0.93125 0.99150 0.91377 0.89256 1.23202 0.81095 0.96311 1.03979 1.88067 1.22422 1.92545 1.28758 1.23450 1.01258 0.97870 0.83461 1.22685 0.86591 0.97787 1.03408 1.60781 1.13356 1.50513 1.06895 0.91658 0.84669 0.82458 0.82843 0.75162 0.75164 0.90998 0.91169 0.91505 0.87188 0.87125 0.92059 0.90723 0.87787 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.89 13.67 21.61 0.30 -50.59 16 2 C -0.01 -0.43 5.49 84.83 0.47 0.03 16 3 Si 1.01 40.82 29.55 68.60 2.03 42.85 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.42 -22.77 9.49 67.91 0.64 -22.13 16 8 H 0.10 5.01 5.20 -2.91 -0.02 5.00 16 9 O -0.20 -10.99 9.32 -22.79 -0.21 -11.20 16 10 C 0.13 6.13 6.66 22.69 0.15 6.28 16 11 C -0.26 -11.70 9.14 22.42 0.20 -11.49 16 12 C 0.12 4.70 7.29 22.37 0.16 4.86 16 13 F -0.15 -5.32 17.26 44.97 0.78 -4.54 16 14 C -0.20 -7.10 10.02 22.33 0.22 -6.88 16 15 C -0.05 -1.89 8.69 22.37 0.19 -1.70 16 16 C 0.08 3.36 6.33 38.22 0.24 3.60 16 17 N -0.67 -24.99 5.20 -316.69 -1.65 -26.63 16 18 C 0.70 24.02 8.41 179.05 1.51 25.53 16 19 O -0.62 -23.82 13.76 -4.02 -0.06 -23.87 16 20 N -0.72 -18.38 5.39 -478.52 -2.58 -20.96 16 21 C 0.15 3.00 5.30 86.38 0.46 3.45 16 22 C 0.05 0.81 2.79 44.93 0.13 0.93 16 23 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 24 C 0.03 0.46 6.29 72.02 0.45 0.92 16 25 O -0.40 -6.88 10.83 -148.98 -1.61 -8.49 16 26 C 0.02 0.21 7.01 72.02 0.50 0.71 16 27 C 0.02 0.30 6.76 86.32 0.58 0.89 16 28 N -0.68 -10.01 6.03 -490.71 -2.96 -12.97 16 29 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.14 6.06 5.64 -2.91 -0.02 6.05 16 31 H 0.16 4.41 8.06 -2.91 -0.02 4.38 16 32 H 0.15 5.48 6.19 -2.91 -0.02 5.46 16 33 H 0.41 15.18 8.59 -92.71 -0.80 14.39 16 34 H 0.41 9.87 8.16 -92.71 -0.76 9.11 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.35 4.49 8.79 -89.69 -0.79 3.70 16 Total: -1.00 -66.86 364.22 -1.29 -68.14 By element: Atomic # 1 Polarization: 44.50 SS G_CDS: -1.24 Total: 43.26 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.92 Total: 5.00 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -6.89 Total: -111.15 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.88 Total: -43.56 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.78 Total: -4.54 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -66.86 -1.29 -68.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859662325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.682 kcal (2) G-P(sol) polarization free energy of solvation -66.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds