Wall clock time and date at job start Tue Mar 31 2020 22:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86805 * 119.99983 * 2 1 4 4 H 1.48500 * 109.47001 * 269.99930 * 3 2 1 5 5 H 1.48496 * 109.47150 * 29.99584 * 3 2 1 6 6 H 1.48498 * 109.47028 * 149.99991 * 3 2 1 7 7 C 1.38637 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00073 * 0.02562 * 7 2 1 9 9 O 1.34811 * 119.99986 * 180.02562 * 7 2 1 10 10 C 1.35774 * 117.00041 * 185.02115 * 9 7 2 11 11 C 1.38733 * 120.08818 * 354.80222 * 10 9 7 12 12 C 1.38341 * 119.97863 * 180.02562 * 11 10 9 13 13 F 1.35105 * 119.92602 * 180.02562 * 12 11 10 14 14 C 1.38544 * 120.15266 * 359.97438 * 12 11 10 15 15 C 1.38201 * 120.17458 * 0.02562 * 14 12 11 16 16 C 1.38694 * 120.01634 * 359.97438 * 15 14 12 17 17 N 1.40138 * 120.07316 * 179.97438 * 16 15 14 18 18 C 1.34779 * 120.00104 * 335.21646 * 17 16 15 19 19 O 1.21598 * 119.99725 * 354.33320 * 18 17 16 20 20 N 1.34771 * 120.00111 * 174.33310 * 18 17 16 21 21 C 1.46500 * 119.99912 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.47411 * 180.02562 * 21 20 18 23 23 H 1.09001 * 109.50458 * 64.99515 * 22 21 20 24 24 C 1.53096 * 109.50733 * 185.08704 * 22 21 20 25 25 O 1.43020 * 109.25492 * 176.78070 * 24 22 21 26 26 C 1.43012 * 113.73980 * 301.32603 * 25 24 22 27 27 C 1.53100 * 109.25666 * 58.67209 * 26 25 24 28 28 N 1.47014 * 109.50179 * 304.91322 * 22 21 20 29 29 H 0.96996 * 120.00029 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.01039 * 0.04891 * 11 10 9 31 31 H 1.07998 * 119.91589 * 180.02562 * 14 12 11 32 32 H 1.07994 * 119.99294 * 179.72026 * 15 14 12 33 33 H 0.96999 * 120.00281 * 155.21610 * 17 16 15 34 34 H 0.97000 * 120.00495 * 359.97438 * 20 18 17 35 35 H 1.09001 * 109.47086 * 299.99939 * 21 20 18 36 36 H 1.09005 * 109.47561 * 59.99907 * 21 20 18 37 37 H 1.09000 * 109.50521 * 296.71504 * 24 22 21 38 38 H 1.08995 * 109.50606 * 56.80557 * 24 22 21 39 39 H 1.09005 * 109.50629 * 178.60304 * 26 25 24 40 40 H 1.08997 * 109.50847 * 298.73950 * 26 25 24 41 41 H 1.09007 * 109.50615 * 63.08689 * 27 26 25 42 42 H 1.08998 * 109.50656 * 183.17014 * 27 26 25 43 43 H 1.00899 * 111.00209 * 305.22315 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3570 -1.2006 0.0011 10 6 3.9734 -2.4058 -0.1043 11 6 3.2240 -3.5733 -0.0978 12 6 3.8545 -4.8000 -0.2047 13 9 3.1237 -5.9363 -0.1987 14 6 5.2337 -4.8660 -0.3190 15 6 5.9864 -3.7070 -0.3263 16 6 5.3617 -2.4733 -0.2194 17 7 6.1238 -1.2973 -0.2261 18 6 7.4145 -1.3285 0.1607 19 8 7.8891 -2.3528 0.6126 20 7 8.1790 -0.2245 0.0467 21 6 9.5822 -0.2587 0.4666 22 6 10.2178 1.1135 0.2337 23 1 9.7412 1.8499 0.8808 24 6 11.7137 1.0447 0.5524 25 8 12.3165 2.3086 0.2615 26 6 12.1620 2.7206 -1.0992 27 6 10.6707 2.8063 -1.4347 28 7 10.0381 1.5055 -1.1717 29 1 -0.4850 0.8400 0.0004 30 1 2.1487 -3.5244 -0.0095 31 1 5.7219 -5.8257 -0.4027 32 1 7.0616 -3.7620 -0.4110 33 1 5.7224 -0.4608 -0.5091 34 1 7.8006 0.5925 -0.3141 35 1 9.6384 -0.5097 1.5258 36 1 10.1170 -1.0105 -0.1138 37 1 11.8505 0.8105 1.6081 38 1 12.1801 0.2697 -0.0558 39 1 12.6231 3.6985 -1.2380 40 1 12.6416 1.9948 -1.7559 41 1 10.2015 3.5704 -0.8148 42 1 10.5485 3.0653 -2.4863 43 1 10.3976 0.7970 -1.7936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859662326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:17 Heat of formation + Delta-G solvation = -104.335592 kcal Electronic energy + Delta-G solvation = -29076.587558 eV Core-core repulsion = 24651.693136 eV Total energy + Delta-G solvation = -4424.894421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.24165 -40.54850 -40.01803 -38.88460 -36.68080 -35.83272 -34.17769 -34.07561 -32.49198 -31.93798 -29.55655 -28.60003 -27.20208 -25.80904 -25.37648 -23.22299 -22.38360 -21.60330 -21.48133 -20.56362 -18.42791 -18.26064 -17.84511 -17.09672 -16.66714 -16.48114 -16.08879 -15.82311 -15.58435 -15.29558 -15.28493 -15.00309 -14.76496 -14.72663 -14.12248 -13.93146 -13.81906 -13.46052 -13.40502 -13.26119 -12.90399 -12.61376 -12.42099 -12.26989 -11.87730 -11.79629 -11.69932 -11.55843 -11.43895 -10.97248 -10.79027 -10.67540 -10.46305 -9.98019 -9.74186 -9.56150 -9.08182 -8.99126 -8.77629 -7.93042 -7.15046 -6.52856 -4.19975 1.79651 2.04798 2.71924 3.10933 3.14562 3.24825 3.31237 3.32846 3.59351 4.10040 4.13443 4.31300 4.37813 4.44778 4.48809 4.57339 4.59232 4.70452 4.85880 4.95900 5.02232 5.05855 5.12411 5.23322 5.38846 5.46661 5.53523 5.58040 5.71766 5.93320 6.09276 6.28429 6.40516 6.50372 6.57551 6.65311 6.77980 6.84520 6.91230 7.01913 7.18999 7.48652 7.67630 7.89265 8.14681 8.71679 8.80429 9.35817 10.54469 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010573 B = 0.003096 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.692241 B = 9042.592736 C =11381.409708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.109 0.891 9 O -0.211 6.211 10 C 0.160 3.840 11 C -0.242 4.242 12 C 0.123 3.877 13 F -0.150 7.150 14 C -0.217 4.217 15 C -0.064 4.064 16 C 0.085 3.915 17 N -0.666 5.666 18 C 0.703 3.297 19 O -0.584 6.584 20 N -0.736 5.736 21 C 0.150 3.850 22 C 0.038 3.962 23 H 0.100 0.900 24 C 0.031 3.969 25 O -0.378 6.378 26 C 0.019 3.981 27 C 0.022 3.978 28 N -0.677 5.677 29 H 0.281 0.719 30 H 0.149 0.851 31 H 0.124 0.876 32 H 0.151 0.849 33 H 0.409 0.591 34 H 0.405 0.595 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.786 4.818 -3.089 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.116 6.116 10 C 0.105 3.895 11 C -0.263 4.263 12 C 0.103 3.897 13 F -0.129 7.129 14 C -0.237 4.237 15 C -0.084 4.084 16 C -0.010 4.010 17 N -0.312 5.312 18 C 0.404 3.596 19 O -0.463 6.463 20 N -0.393 5.393 21 C 0.025 3.975 22 C -0.073 4.073 23 H 0.118 0.882 24 C -0.048 4.048 25 O -0.296 6.296 26 C -0.060 4.060 27 C -0.108 4.108 28 N -0.307 5.307 29 H 0.091 0.909 30 H 0.166 0.834 31 H 0.142 0.858 32 H 0.168 0.832 33 H 0.244 0.756 34 H 0.240 0.760 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 21.553 4.653 -2.425 22.182 hybrid contribution 0.306 0.914 -0.470 1.072 sum 21.859 5.567 -2.895 22.741 Atomic orbital electron populations 1.69642 1.05583 1.28673 1.47124 1.24466 0.95033 0.98793 0.95576 0.86204 0.80364 0.81518 0.78913 1.19720 1.20640 1.18405 1.20759 0.76427 0.96845 1.52536 0.87386 1.83505 1.23055 1.24725 1.80269 1.18423 0.89479 0.85904 0.95689 1.20948 1.02031 0.90054 1.13287 1.17463 0.89069 0.81306 1.01903 1.91423 1.77887 1.49450 1.94095 1.20560 0.91475 0.99036 1.12638 1.20808 1.00797 0.89057 0.97756 1.16717 0.86801 0.86050 1.11415 1.42231 1.09584 1.11034 1.68345 1.15858 0.81030 0.83895 0.78839 1.90858 1.73163 1.30816 1.51459 1.44854 1.11059 1.13666 1.69692 1.21042 0.80850 0.94853 1.00767 1.22527 0.95313 0.98109 0.91318 0.88190 1.23184 0.92693 0.85974 1.02983 1.88098 1.76802 1.37099 1.27575 1.23329 0.97646 1.01245 0.83740 1.22684 0.92477 0.92656 1.02999 1.60837 1.61024 1.04984 1.03863 0.90851 0.83364 0.85800 0.83195 0.75565 0.75960 0.90635 0.91530 0.87718 0.92566 0.88222 0.93051 0.89665 0.89253 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.30 13.96 55.48 0.77 -23.52 16 2 C 0.07 1.74 5.49 -17.52 -0.10 1.65 16 3 Si 0.90 20.07 28.62 -169.99 -4.86 15.21 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.39 -10.42 9.95 30.88 0.31 -10.11 16 8 H 0.11 3.00 5.44 -52.49 -0.29 2.71 16 9 O -0.21 -5.10 8.00 0.03 0.00 -5.10 16 10 C 0.16 3.53 6.66 -38.94 -0.26 3.27 16 11 C -0.24 -5.28 9.14 -39.36 -0.36 -5.64 16 12 C 0.12 2.43 7.29 -39.43 -0.29 2.14 16 13 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 14 C -0.22 -3.92 10.02 -39.48 -0.40 -4.32 16 15 C -0.06 -1.18 8.72 -39.43 -0.34 -1.52 16 16 C 0.09 1.68 6.45 -83.43 -0.54 1.14 16 17 N -0.67 -11.35 5.29 -14.07 -0.07 -11.42 16 18 C 0.70 11.08 8.37 -86.92 -0.73 10.35 16 19 O -0.58 -10.73 13.51 5.28 0.07 -10.66 16 20 N -0.74 -8.44 5.39 -65.22 -0.35 -8.79 16 21 C 0.15 1.36 5.30 -4.04 -0.02 1.34 16 22 C 0.04 0.27 2.79 -67.60 -0.19 0.08 16 23 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 24 C 0.03 0.21 6.29 37.21 0.23 0.44 16 25 O -0.38 -3.17 10.83 -35.23 -0.38 -3.56 16 26 C 0.02 0.11 7.01 37.21 0.26 0.37 16 27 C 0.02 0.13 6.76 -3.71 -0.03 0.10 16 28 N -0.68 -4.63 6.03 -106.45 -0.64 -5.27 16 29 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.15 3.38 5.63 -52.49 -0.30 3.08 16 31 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 32 H 0.15 2.70 5.77 -52.49 -0.30 2.40 16 33 H 0.41 6.52 8.37 -40.82 -0.34 6.18 16 34 H 0.41 4.18 8.16 -40.82 -0.33 3.84 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.34 2.18 8.79 -39.29 -0.35 1.83 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -30.51 362.27 -7.68 -38.18 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.27 Total: 13.03 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.44 Total: -0.70 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.29 Total: -49.01 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.31 Total: -19.32 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.86 Total: 15.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.51 -7.68 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859662326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.151 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds