Wall clock time and date at job start Tue Mar 31 2020 22:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86805 * 119.99983 * 2 1 4 4 H 1.48500 * 109.47001 * 269.99930 * 3 2 1 5 5 H 1.48496 * 109.47150 * 29.99584 * 3 2 1 6 6 H 1.48498 * 109.47028 * 149.99991 * 3 2 1 7 7 C 1.38637 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00073 * 0.02562 * 7 2 1 9 9 O 1.34811 * 119.99986 * 180.02562 * 7 2 1 10 10 C 1.35774 * 117.00041 * 185.02115 * 9 7 2 11 11 C 1.38733 * 120.08818 * 354.80222 * 10 9 7 12 12 C 1.38341 * 119.97863 * 180.02562 * 11 10 9 13 13 F 1.35105 * 119.92602 * 180.02562 * 12 11 10 14 14 C 1.38544 * 120.15266 * 359.97438 * 12 11 10 15 15 C 1.38201 * 120.17458 * 0.02562 * 14 12 11 16 16 C 1.38694 * 120.01634 * 359.97438 * 15 14 12 17 17 N 1.40138 * 120.07316 * 179.97438 * 16 15 14 18 18 C 1.34779 * 120.00104 * 335.21646 * 17 16 15 19 19 O 1.21598 * 119.99725 * 354.33320 * 18 17 16 20 20 N 1.34771 * 120.00111 * 174.33310 * 18 17 16 21 21 C 1.46500 * 119.99912 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.47411 * 180.02562 * 21 20 18 23 23 H 1.09001 * 109.50458 * 64.99515 * 22 21 20 24 24 C 1.53096 * 109.50733 * 185.08704 * 22 21 20 25 25 O 1.43020 * 109.25492 * 176.78070 * 24 22 21 26 26 C 1.43012 * 113.73980 * 301.32603 * 25 24 22 27 27 C 1.53100 * 109.25666 * 58.67209 * 26 25 24 28 28 N 1.47014 * 109.50179 * 304.91322 * 22 21 20 29 29 H 0.96996 * 120.00029 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.01039 * 0.04891 * 11 10 9 31 31 H 1.07998 * 119.91589 * 180.02562 * 14 12 11 32 32 H 1.07994 * 119.99294 * 179.72026 * 15 14 12 33 33 H 0.96999 * 120.00281 * 155.21610 * 17 16 15 34 34 H 0.97000 * 120.00495 * 359.97438 * 20 18 17 35 35 H 1.09001 * 109.47086 * 299.99939 * 21 20 18 36 36 H 1.09005 * 109.47561 * 59.99907 * 21 20 18 37 37 H 1.09000 * 109.50521 * 296.71504 * 24 22 21 38 38 H 1.08995 * 109.50606 * 56.80557 * 24 22 21 39 39 H 1.09005 * 109.50629 * 178.60304 * 26 25 24 40 40 H 1.08997 * 109.50847 * 298.73950 * 26 25 24 41 41 H 1.09007 * 109.50615 * 63.08689 * 27 26 25 42 42 H 1.08998 * 109.50656 * 183.17014 * 27 26 25 43 43 H 1.00899 * 111.00209 * 305.22315 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3570 -1.2006 0.0011 10 6 3.9734 -2.4058 -0.1043 11 6 3.2240 -3.5733 -0.0978 12 6 3.8545 -4.8000 -0.2047 13 9 3.1237 -5.9363 -0.1987 14 6 5.2337 -4.8660 -0.3190 15 6 5.9864 -3.7070 -0.3263 16 6 5.3617 -2.4733 -0.2194 17 7 6.1238 -1.2973 -0.2261 18 6 7.4145 -1.3285 0.1607 19 8 7.8891 -2.3528 0.6126 20 7 8.1790 -0.2245 0.0467 21 6 9.5822 -0.2587 0.4666 22 6 10.2178 1.1135 0.2337 23 1 9.7412 1.8499 0.8808 24 6 11.7137 1.0447 0.5524 25 8 12.3165 2.3086 0.2615 26 6 12.1620 2.7206 -1.0992 27 6 10.6707 2.8063 -1.4347 28 7 10.0381 1.5055 -1.1717 29 1 -0.4850 0.8400 0.0004 30 1 2.1487 -3.5244 -0.0095 31 1 5.7219 -5.8257 -0.4027 32 1 7.0616 -3.7620 -0.4110 33 1 5.7224 -0.4608 -0.5091 34 1 7.8006 0.5925 -0.3141 35 1 9.6384 -0.5097 1.5258 36 1 10.1170 -1.0105 -0.1138 37 1 11.8505 0.8105 1.6081 38 1 12.1801 0.2697 -0.0558 39 1 12.6231 3.6985 -1.2380 40 1 12.6416 1.9948 -1.7559 41 1 10.2015 3.5704 -0.8148 42 1 10.5485 3.0653 -2.4863 43 1 10.3976 0.7970 -1.7936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859662326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:17 Heat of formation + Delta-G solvation = -127.720341 kcal Electronic energy + Delta-G solvation = -29077.601597 eV Core-core repulsion = 24651.693136 eV Total energy + Delta-G solvation = -4425.908460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.82241 -41.83601 -40.82276 -40.30113 -38.23350 -36.70946 -35.59470 -34.83045 -34.45908 -32.64089 -31.19203 -30.02873 -27.91405 -27.30548 -26.44345 -24.26891 -23.54954 -23.09370 -22.09771 -21.81683 -20.13852 -19.78182 -19.31504 -18.43126 -17.37730 -17.27344 -17.13502 -16.95716 -16.71154 -16.59846 -16.42393 -16.03598 -15.89642 -15.86753 -15.72636 -15.53428 -15.21416 -14.97109 -14.74305 -14.24336 -14.17161 -13.80375 -13.58924 -13.43009 -13.23633 -13.06686 -12.61622 -12.40233 -12.31005 -12.24449 -12.16895 -12.08812 -11.63576 -11.38912 -11.17758 -11.04963 -10.91732 -10.10881 -9.58614 -9.29448 -8.72379 -8.50506 -6.24464 0.19799 0.42315 1.34562 1.38857 1.52927 1.57581 2.03527 2.27620 2.67106 2.79589 2.83085 3.00634 3.01322 3.23763 3.40617 3.72315 3.80616 3.92324 3.96859 4.14035 4.16058 4.20094 4.29810 4.38559 4.48106 4.52887 4.67035 4.72172 4.79756 4.90188 4.92100 5.03955 5.09962 5.19424 5.29339 5.47059 5.48650 5.61525 5.82324 5.83477 5.95634 6.08543 6.11778 6.29838 6.81393 6.96086 7.40979 7.50891 8.60597 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010573 B = 0.003096 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.692241 B = 9042.592736 C =11381.409708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.251 1.251 7 C -0.401 4.401 8 H 0.079 0.921 9 O -0.222 6.222 10 C 0.133 3.867 11 C -0.253 4.253 12 C 0.111 3.889 13 F -0.147 7.147 14 C -0.188 4.188 15 C -0.063 4.063 16 C 0.098 3.902 17 N -0.668 5.668 18 C 0.703 3.297 19 O -0.609 6.609 20 N -0.718 5.718 21 C 0.150 3.850 22 C 0.051 3.949 23 H 0.093 0.907 24 C 0.032 3.968 25 O -0.400 6.400 26 C 0.017 3.983 27 C 0.025 3.975 28 N -0.684 5.684 29 H 0.286 0.714 30 H 0.126 0.874 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.414 0.586 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.036 5.363 -3.643 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.175 1.175 7 C -0.477 4.477 8 H 0.097 0.903 9 O -0.128 6.128 10 C 0.081 3.919 11 C -0.274 4.274 12 C 0.091 3.909 13 F -0.126 7.126 14 C -0.208 4.208 15 C -0.083 4.083 16 C 0.002 3.998 17 N -0.314 5.314 18 C 0.403 3.597 19 O -0.490 6.490 20 N -0.374 5.374 21 C 0.026 3.974 22 C -0.060 4.060 23 H 0.111 0.889 24 C -0.047 4.047 25 O -0.318 6.318 26 C -0.061 4.061 27 C -0.104 4.104 28 N -0.314 5.314 29 H 0.095 0.905 30 H 0.144 0.856 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.251 0.749 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 24.858 5.204 -2.993 25.572 hybrid contribution -0.524 0.541 -0.321 0.818 sum 24.334 5.745 -3.313 25.221 Atomic orbital electron populations 1.69742 1.07237 1.29827 1.49262 1.25334 0.95845 1.02407 0.95105 0.85206 0.79169 0.76737 0.79611 1.18348 1.20027 1.17472 1.20649 0.77706 0.96210 1.53160 0.90326 1.83454 1.21393 1.25546 1.82438 1.18731 0.90597 0.85448 0.97119 1.20951 1.01255 0.91373 1.13837 1.17504 0.89886 0.80671 1.02807 1.91428 1.78032 1.49006 1.94139 1.20959 0.90389 1.00573 1.08883 1.21052 1.01428 0.88581 0.97265 1.16863 0.86008 0.87604 1.09350 1.42255 1.10054 1.10481 1.68614 1.15951 0.80595 0.84556 0.78553 1.90832 1.73457 1.32062 1.52627 1.44808 1.11576 1.12653 1.68325 1.21182 0.79346 0.96211 1.00677 1.22335 0.95455 0.96606 0.91606 0.88908 1.23212 0.92109 0.85792 1.03617 1.88073 1.77043 1.37744 1.28966 1.23450 0.97781 1.02027 0.82854 1.22679 0.92274 0.91845 1.03646 1.60833 1.61441 1.05560 1.03615 0.90466 0.85610 0.82223 0.81758 0.74945 0.75005 0.90842 0.91029 0.87170 0.91663 0.87241 0.92211 0.90530 0.87870 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.19 13.96 21.61 0.30 -52.89 16 2 C 0.01 0.67 5.49 84.83 0.47 1.13 16 3 Si 0.97 41.47 28.62 68.60 1.96 43.44 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.40 -22.36 9.95 67.92 0.68 -21.68 16 8 H 0.08 4.70 5.44 -2.91 -0.02 4.69 16 9 O -0.22 -10.93 8.00 -22.82 -0.18 -11.11 16 10 C 0.13 5.95 6.66 22.68 0.15 6.11 16 11 C -0.25 -11.33 9.14 22.41 0.20 -11.12 16 12 C 0.11 4.33 7.29 22.37 0.16 4.49 16 13 F -0.15 -5.57 17.26 44.97 0.78 -4.80 16 14 C -0.19 -6.28 10.02 22.33 0.22 -6.06 16 15 C -0.06 -2.16 8.72 22.37 0.20 -1.97 16 16 C 0.10 3.73 6.45 38.22 0.25 3.97 16 17 N -0.67 -21.57 5.29 -316.69 -1.68 -23.25 16 18 C 0.70 20.53 8.37 179.06 1.50 22.03 16 19 O -0.61 -20.86 13.51 -4.02 -0.05 -20.91 16 20 N -0.72 -14.70 5.39 -478.52 -2.58 -17.28 16 21 C 0.15 2.36 5.30 86.38 0.46 2.82 16 22 C 0.05 0.61 2.79 44.93 0.13 0.74 16 23 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 24 C 0.03 0.36 6.29 72.01 0.45 0.81 16 25 O -0.40 -5.94 10.83 -148.98 -1.61 -7.56 16 26 C 0.02 0.16 7.01 72.02 0.50 0.67 16 27 C 0.02 0.24 6.76 86.31 0.58 0.82 16 28 N -0.68 -7.67 6.03 -490.68 -2.96 -10.63 16 29 H 0.29 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.13 6.16 5.63 -2.91 -0.02 6.15 16 31 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.17 5.36 5.77 -2.91 -0.02 5.35 16 33 H 0.41 12.51 8.37 -92.71 -0.78 11.73 16 34 H 0.41 7.44 8.16 -92.71 -0.76 6.68 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.35 3.46 8.79 -89.69 -0.79 2.67 16 Total: -1.00 -66.92 362.27 -1.30 -68.22 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -1.22 Total: 34.02 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 5.95 Total: 2.76 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -6.92 Total: -104.05 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -1.85 Total: -39.58 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.78 Total: -4.80 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.96 Total: 43.44 kcal Total: -66.92 -1.30 -68.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859662326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.504 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds