Wall clock time and date at job start Tue Mar 31 2020 22:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38311 * 119.92156 * 2 1 4 4 C 1.38083 * 120.07388 * 180.02562 * 3 2 1 5 5 C 1.38932 * 119.92348 * 359.97438 * 4 3 2 6 6 N 1.39682 * 120.07405 * 179.97438 * 5 4 3 7 7 C 1.38888 * 119.85311 * 0.02562 * 5 4 3 8 8 C 1.38129 * 119.92320 * 359.73207 * 7 5 4 9 9 S 1.76205 * 119.96337 * 180.27269 * 8 7 5 10 10 O 1.42092 * 106.39960 * 1.21091 * 9 8 7 11 11 O 1.42101 * 106.40035 * 134.13481 * 9 8 7 12 12 N 1.65597 * 107.21217 * 247.67150 * 9 8 7 13 13 C 1.47085 * 120.88352 * 264.80394 * 12 9 8 14 14 C 1.53690 * 108.27577 * 128.75978 * 13 12 9 15 15 N 1.46897 * 109.25918 * 54.08759 * 14 13 12 16 16 C 1.46896 * 111.00339 * 172.60875 * 15 14 13 17 17 C 1.50701 * 109.47081 * 294.30079 * 16 15 14 18 18 H 1.08003 * 119.99562 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00523 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99452 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00327 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47155 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47196 * 119.99908 * 21 19 17 24 24 H 1.48494 * 109.47361 * 239.99904 * 21 19 17 25 25 C 1.46904 * 111.26521 * 296.75314 * 15 14 13 26 26 C 1.47080 * 120.88199 * 85.08825 * 12 9 8 27 27 H 1.08996 * 109.46950 * 96.25736 * 1 2 3 28 28 H 1.08999 * 109.46677 * 216.25357 * 1 2 3 29 29 H 1.09002 * 109.47130 * 336.25740 * 1 2 3 30 30 H 1.07996 * 119.96836 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.04050 * 180.02562 * 4 3 2 32 32 H 0.97000 * 119.99836 * 359.97438 * 6 5 4 33 33 H 0.96997 * 119.99850 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.03741 * 179.97438 * 7 5 4 35 35 H 1.08995 * 109.62720 * 248.53079 * 13 12 9 36 36 H 1.08994 * 109.62425 * 9.10797 * 13 12 9 37 37 H 1.09000 * 109.64988 * 294.07649 * 14 13 12 38 38 H 1.09007 * 109.44313 * 173.96192 * 14 13 12 39 39 H 1.09007 * 109.47307 * 54.29437 * 16 15 14 40 40 H 1.09000 * 109.47469 * 174.29710 * 16 15 14 41 41 H 0.96999 * 119.99862 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.49261 * 303.14489 * 25 15 14 43 43 H 1.08998 * 109.49415 * 183.06371 * 25 15 14 44 44 H 1.08999 * 109.62975 * 350.89425 * 26 12 9 45 45 H 1.09001 * 109.63028 * 111.47212 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1988 0.0000 4 6 3.5778 1.2024 -0.0005 5 6 4.2740 0.0002 -0.0005 6 7 5.6708 0.0002 -0.0016 7 6 3.5781 -1.2018 -0.0005 8 6 2.1968 -1.1982 0.0051 9 16 1.3129 -2.7225 0.0123 10 8 2.2906 -3.7531 0.0397 11 8 0.2944 -2.5910 0.9945 12 7 0.5412 -2.8484 -1.4475 13 6 -0.8581 -2.4222 -1.6010 14 6 -0.9435 -1.4743 -2.8078 15 7 -0.3634 -2.1347 -3.9847 16 6 -0.5815 -1.3356 -5.1978 17 6 -2.0563 -1.2759 -5.5016 18 1 -2.7611 -1.7815 -4.8581 19 6 -2.5060 -0.5768 -6.6017 20 7 -1.6477 0.0384 -7.3856 21 14 -4.3340 -0.5035 -6.9786 22 1 -5.0824 -1.2716 -5.9514 23 1 -4.7859 0.9110 -6.9650 24 1 -4.5871 -1.0911 -8.3187 25 6 1.0654 -2.4145 -3.7885 26 6 1.2351 -3.3953 -2.6234 27 1 -0.3633 -0.1120 -1.0215 28 1 -0.3633 -0.8287 0.6077 29 1 -0.3633 0.9407 0.4138 30 1 1.6552 2.1330 0.0004 31 1 4.1160 2.1388 -0.0001 32 1 6.1558 0.8403 -0.0027 33 1 6.1558 -0.8398 -0.0020 34 1 4.1163 -2.1381 -0.0010 35 1 -1.4898 -3.2939 -1.7708 36 1 -1.1829 -1.9009 -0.7006 37 1 -0.3909 -0.5591 -2.5949 38 1 -1.9876 -1.2311 -3.0050 39 1 -0.2018 -0.3259 -5.0409 40 1 -0.0563 -1.7952 -6.0351 41 1 -1.9640 0.5306 -8.1593 42 1 1.5900 -1.4863 -3.5619 43 1 1.4781 -2.8537 -4.6967 44 1 2.2947 -3.5178 -2.3992 45 1 0.8005 -4.3588 -2.8897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867818273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:03 Heat of formation + Delta-G solvation = -26.594752 kcal Electronic energy + Delta-G solvation = -28743.488853 eV Core-core repulsion = 24888.178703 eV Total energy + Delta-G solvation = -3855.310150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.67824 -38.42374 -37.38617 -35.84375 -35.24901 -34.40451 -32.32828 -31.36692 -31.32388 -30.44126 -27.85577 -25.97503 -25.06137 -23.59868 -23.32531 -21.79824 -21.71225 -20.13855 -18.79797 -18.04425 -17.46849 -17.12098 -16.41175 -15.87675 -15.82007 -15.24442 -14.85030 -14.66732 -14.58728 -14.36122 -14.11376 -13.91209 -13.83689 -13.64734 -13.45178 -12.88608 -12.63804 -12.36982 -12.21738 -12.18286 -11.95836 -11.82558 -11.63536 -11.57857 -11.27029 -11.05002 -10.84151 -10.79679 -10.64338 -10.53654 -10.51454 -10.35553 -9.87613 -9.41365 -9.29488 -8.81722 -8.47508 -7.70045 -7.28307 -6.06871 -4.08465 0.39488 0.79426 1.34966 2.94977 3.28632 3.36681 3.40959 3.45574 3.56975 3.80102 4.36033 4.38840 4.66747 4.75540 4.78181 4.88567 4.94181 5.19002 5.28974 5.36212 5.40510 5.49806 5.53213 5.62052 5.63692 5.67218 5.74608 5.87223 5.87474 6.01603 6.04764 6.12486 6.20919 6.33055 6.36742 6.48233 6.52246 6.62435 6.76104 7.19549 7.23292 7.28405 7.46657 7.75276 8.02744 8.13465 8.48588 8.99564 9.56329 11.03951 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.003588 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.763339 B = 7802.128112 C = 8372.937832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.027 4.027 3 C -0.095 4.095 4 C -0.140 4.140 5 C 0.187 3.813 6 N -0.880 5.880 7 C -0.098 4.098 8 C -0.631 4.631 9 S 2.694 3.306 10 O -0.963 6.963 11 O -0.957 6.957 12 N -0.992 5.992 13 C 0.114 3.886 14 C 0.047 3.953 15 N -0.531 5.531 16 C 0.193 3.807 17 C -0.508 4.508 18 H 0.065 0.935 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.284 1.284 25 C 0.041 3.959 26 C 0.130 3.870 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.398 0.602 33 H 0.399 0.601 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.031 0.969 38 H 0.097 0.903 39 H -0.009 1.009 40 H 0.031 0.969 41 H 0.261 0.739 42 H 0.027 0.973 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.690 0.362 15.533 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.030 4.030 3 C -0.114 4.114 4 C -0.163 4.163 5 C 0.082 3.918 6 N -0.420 5.420 7 C -0.122 4.122 8 C -0.718 4.718 9 S 2.785 3.215 10 O -0.954 6.954 11 O -0.947 6.947 12 N -0.831 5.831 13 C -0.011 4.011 14 C -0.083 4.083 15 N -0.256 5.256 16 C 0.068 3.932 17 C -0.546 4.546 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.090 4.090 26 C 0.005 3.995 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.156 0.844 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.049 0.951 38 H 0.115 0.885 39 H 0.008 0.992 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.386 -0.589 15.987 19.636 hybrid contribution 0.347 1.845 -0.691 2.001 sum 11.732 1.257 15.296 19.318 Atomic orbital electron populations 1.22045 0.90798 1.06185 1.05276 1.19310 0.95838 0.91585 0.96293 1.20953 0.93484 0.97778 0.99177 1.20854 0.94623 0.96337 1.04478 1.17750 0.84350 0.93753 0.95917 1.42391 1.02813 1.10954 1.85854 1.20277 0.92179 0.97413 1.02354 1.30624 1.05293 1.19962 1.15933 1.01901 0.73114 0.73682 0.72775 1.93532 1.61585 1.54057 1.86193 1.93500 1.57210 1.86738 1.57281 1.57626 1.21757 1.77120 1.26634 1.22041 0.80050 0.99709 0.99289 1.22553 1.02109 0.93747 0.89887 1.61995 1.11058 1.48671 1.03891 1.19735 0.97458 0.90261 0.85722 1.21193 0.91914 1.31280 1.10249 0.91662 1.24989 0.97952 0.95514 0.96124 1.69970 1.33899 1.34024 1.15887 0.86454 0.85129 0.77600 0.78303 1.19570 1.21176 1.21056 1.22395 0.91523 0.97467 0.97591 1.21572 0.95885 0.97724 0.84317 0.88644 0.87496 0.90297 0.85184 0.85660 0.77383 0.77226 0.84380 0.90036 0.88933 0.95124 0.88479 0.99162 0.95087 0.92982 0.95529 0.90163 0.90065 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 8.00 36.01 0.29 -2.04 16 2 C -0.03 -0.36 5.88 -104.59 -0.61 -0.97 16 3 C -0.09 -1.10 9.67 -39.61 -0.38 -1.49 16 4 C -0.14 -1.49 9.90 -39.38 -0.39 -1.88 16 5 C 0.19 2.04 6.75 -83.78 -0.57 1.48 16 6 N -0.88 -6.56 9.09 32.41 0.29 -6.27 16 7 C -0.10 -1.23 9.40 -39.38 -0.37 -1.60 16 8 C -0.63 -8.66 5.91 -39.61 -0.23 -8.89 16 9 S 2.69 39.16 5.12 -107.50 -0.55 38.61 16 10 O -0.96 -15.40 15.92 -57.17 -0.91 -16.31 16 11 O -0.96 -15.21 14.10 -57.17 -0.81 -16.02 16 12 N -0.99 -14.33 3.32 -112.98 -0.38 -14.71 16 13 C 0.11 1.67 5.60 -3.36 -0.02 1.65 16 14 C 0.05 0.82 4.94 -3.47 -0.02 0.80 16 15 N -0.53 -10.63 4.62 -235.47 -1.09 -11.72 16 16 C 0.19 4.78 4.72 -4.98 -0.02 4.76 16 17 C -0.51 -13.58 8.41 -34.44 -0.29 -13.87 16 18 H 0.07 1.72 7.13 -52.48 -0.37 1.34 16 19 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 21 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 26 C 0.13 1.86 6.51 -3.60 -0.02 1.84 16 27 H 0.10 1.23 3.92 -51.93 -0.20 1.03 16 28 H 0.11 1.40 4.05 -51.93 -0.21 1.19 16 29 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.40 2.12 8.84 -40.82 -0.36 1.76 16 33 H 0.40 2.40 8.84 -40.82 -0.36 2.04 16 34 H 0.14 1.58 7.33 -52.49 -0.38 1.20 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.20 4.66 -51.93 -0.24 0.96 16 37 H 0.03 0.54 6.02 -51.93 -0.31 0.22 16 38 H 0.10 1.82 6.67 -51.92 -0.35 1.48 16 39 H -0.01 -0.25 8.13 -51.93 -0.42 -0.67 16 40 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 44 H 0.08 1.01 7.36 -51.93 -0.38 0.63 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -32.98 358.86 -11.17 -44.15 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.09 Total: 4.26 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -2.76 Total: -18.13 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.43 Total: -57.93 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.72 Total: -32.33 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 39.16 SS G_CDS: -0.55 Total: 38.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.98 -11.17 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867818273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.553 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds