Wall clock time and date at job start Tue Mar 31 2020 22:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38311 * 119.92156 * 2 1 4 4 C 1.38083 * 120.07388 * 180.02562 * 3 2 1 5 5 C 1.38932 * 119.92348 * 359.97438 * 4 3 2 6 6 N 1.39682 * 120.07405 * 179.97438 * 5 4 3 7 7 C 1.38888 * 119.85311 * 0.02562 * 5 4 3 8 8 C 1.38129 * 119.92320 * 359.73207 * 7 5 4 9 9 S 1.76205 * 119.96337 * 180.27269 * 8 7 5 10 10 O 1.42092 * 106.39960 * 1.21091 * 9 8 7 11 11 O 1.42101 * 106.40035 * 134.13481 * 9 8 7 12 12 N 1.65597 * 107.21217 * 247.67150 * 9 8 7 13 13 C 1.47085 * 120.88352 * 264.80394 * 12 9 8 14 14 C 1.53690 * 108.27577 * 128.75978 * 13 12 9 15 15 N 1.46897 * 109.25918 * 54.08759 * 14 13 12 16 16 C 1.46896 * 111.00339 * 172.60875 * 15 14 13 17 17 C 1.50701 * 109.47081 * 294.30079 * 16 15 14 18 18 H 1.08003 * 119.99562 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00523 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99452 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00327 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47155 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47196 * 119.99908 * 21 19 17 24 24 H 1.48494 * 109.47361 * 239.99904 * 21 19 17 25 25 C 1.46904 * 111.26521 * 296.75314 * 15 14 13 26 26 C 1.47080 * 120.88199 * 85.08825 * 12 9 8 27 27 H 1.08996 * 109.46950 * 96.25736 * 1 2 3 28 28 H 1.08999 * 109.46677 * 216.25357 * 1 2 3 29 29 H 1.09002 * 109.47130 * 336.25740 * 1 2 3 30 30 H 1.07996 * 119.96836 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.04050 * 180.02562 * 4 3 2 32 32 H 0.97000 * 119.99836 * 359.97438 * 6 5 4 33 33 H 0.96997 * 119.99850 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.03741 * 179.97438 * 7 5 4 35 35 H 1.08995 * 109.62720 * 248.53079 * 13 12 9 36 36 H 1.08994 * 109.62425 * 9.10797 * 13 12 9 37 37 H 1.09000 * 109.64988 * 294.07649 * 14 13 12 38 38 H 1.09007 * 109.44313 * 173.96192 * 14 13 12 39 39 H 1.09007 * 109.47307 * 54.29437 * 16 15 14 40 40 H 1.09000 * 109.47469 * 174.29710 * 16 15 14 41 41 H 0.96999 * 119.99862 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.49261 * 303.14489 * 25 15 14 43 43 H 1.08998 * 109.49415 * 183.06371 * 25 15 14 44 44 H 1.08999 * 109.62975 * 350.89425 * 26 12 9 45 45 H 1.09001 * 109.63028 * 111.47212 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1988 0.0000 4 6 3.5778 1.2024 -0.0005 5 6 4.2740 0.0002 -0.0005 6 7 5.6708 0.0002 -0.0016 7 6 3.5781 -1.2018 -0.0005 8 6 2.1968 -1.1982 0.0051 9 16 1.3129 -2.7225 0.0123 10 8 2.2906 -3.7531 0.0397 11 8 0.2944 -2.5910 0.9945 12 7 0.5412 -2.8484 -1.4475 13 6 -0.8581 -2.4222 -1.6010 14 6 -0.9435 -1.4743 -2.8078 15 7 -0.3634 -2.1347 -3.9847 16 6 -0.5815 -1.3356 -5.1978 17 6 -2.0563 -1.2759 -5.5016 18 1 -2.7611 -1.7815 -4.8581 19 6 -2.5060 -0.5768 -6.6017 20 7 -1.6477 0.0384 -7.3856 21 14 -4.3340 -0.5035 -6.9786 22 1 -5.0824 -1.2716 -5.9514 23 1 -4.7859 0.9110 -6.9650 24 1 -4.5871 -1.0911 -8.3187 25 6 1.0654 -2.4145 -3.7885 26 6 1.2351 -3.3953 -2.6234 27 1 -0.3633 -0.1120 -1.0215 28 1 -0.3633 -0.8287 0.6077 29 1 -0.3633 0.9407 0.4138 30 1 1.6552 2.1330 0.0004 31 1 4.1160 2.1388 -0.0001 32 1 6.1558 0.8403 -0.0027 33 1 6.1558 -0.8398 -0.0020 34 1 4.1163 -2.1381 -0.0010 35 1 -1.4898 -3.2939 -1.7708 36 1 -1.1829 -1.9009 -0.7006 37 1 -0.3909 -0.5591 -2.5949 38 1 -1.9876 -1.2311 -3.0050 39 1 -0.2018 -0.3259 -5.0409 40 1 -0.0563 -1.7952 -6.0351 41 1 -1.9640 0.5306 -8.1593 42 1 1.5900 -1.4863 -3.5619 43 1 1.4781 -2.8537 -4.6967 44 1 2.2947 -3.5178 -2.3992 45 1 0.8005 -4.3588 -2.8897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867818273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:02 Heat of formation + Delta-G solvation = -51.568428 kcal Electronic energy + Delta-G solvation = -28744.571793 eV Core-core repulsion = 24888.178703 eV Total energy + Delta-G solvation = -3856.393089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.55200 -39.80593 -38.57026 -37.04165 -36.15239 -35.91580 -34.25546 -32.43709 -32.25114 -31.47645 -29.64298 -26.99739 -26.61406 -24.66968 -24.51328 -23.56864 -22.62963 -21.49352 -19.92506 -19.11386 -18.51665 -18.44964 -17.98617 -16.96578 -16.76387 -16.69119 -16.19410 -15.96208 -15.74894 -15.69554 -15.41740 -15.19871 -14.95745 -14.79909 -14.58562 -14.13019 -13.91421 -13.62358 -13.51892 -13.35219 -13.27300 -13.22182 -12.89938 -12.72413 -12.62323 -12.58644 -12.52773 -12.23114 -12.18007 -11.98203 -11.56704 -11.53257 -11.44865 -11.21245 -10.58704 -10.31451 -10.08054 -8.94575 -8.47975 -8.16896 -6.26076 -0.71365 -0.15264 0.46002 1.44147 1.45862 1.58557 1.83471 2.43663 2.49939 2.71356 2.91339 3.16198 3.26940 3.29987 3.65805 3.78390 3.92935 4.04191 4.13453 4.24198 4.33295 4.34986 4.40265 4.46077 4.52376 4.67338 4.74802 4.76676 4.82066 4.88472 4.98638 5.03530 5.08066 5.10075 5.17576 5.25126 5.29588 5.34720 5.44375 5.54980 5.69800 5.76602 6.08851 6.36468 6.48467 6.65648 6.90909 6.94460 7.43908 8.94329 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.003588 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.763339 B = 7802.128112 C = 8372.937832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.049 4.049 3 C -0.102 4.102 4 C -0.142 4.142 5 C 0.187 3.813 6 N -0.867 5.867 7 C -0.119 4.119 8 C -0.641 4.641 9 S 2.706 3.294 10 O -0.979 6.979 11 O -0.973 6.973 12 N -0.993 5.993 13 C 0.121 3.879 14 C 0.049 3.951 15 N -0.537 5.537 16 C 0.209 3.791 17 C -0.518 4.518 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.041 3.959 26 C 0.134 3.866 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.411 0.589 33 H 0.408 0.592 34 H 0.143 0.857 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.031 0.969 38 H 0.082 0.918 39 H -0.039 1.039 40 H 0.005 0.995 41 H 0.263 0.737 42 H 0.022 0.978 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.004 0.744 16.649 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.053 4.053 3 C -0.121 4.121 4 C -0.165 4.165 5 C 0.081 3.919 6 N -0.408 5.408 7 C -0.143 4.143 8 C -0.731 4.731 9 S 2.800 3.200 10 O -0.970 6.970 11 O -0.963 6.963 12 N -0.832 5.832 13 C -0.004 4.004 14 C -0.081 4.081 15 N -0.261 5.261 16 C 0.083 3.917 17 C -0.556 4.556 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.184 1.184 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.089 4.089 26 C 0.009 3.991 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.241 0.759 33 H 0.237 0.763 34 H 0.161 0.839 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.049 0.951 38 H 0.101 0.899 39 H -0.021 1.021 40 H 0.023 0.977 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.100 0.900 44 H 0.121 0.879 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.724 -0.241 17.129 20.758 hybrid contribution 0.392 1.787 -1.002 2.085 sum 12.116 1.546 16.127 20.230 Atomic orbital electron populations 1.22016 0.90771 1.06899 1.04587 1.19493 0.96175 0.92130 0.97499 1.21272 0.94255 0.98016 0.98562 1.21226 0.94510 0.97447 1.03305 1.17883 0.85729 0.93379 0.94914 1.42387 1.01608 1.12229 1.84539 1.20443 0.91994 0.98458 1.03402 1.30405 1.05833 1.19308 1.17504 1.01363 0.72633 0.73691 0.72287 1.93503 1.61870 1.55256 1.86369 1.93476 1.57914 1.87118 1.57839 1.57597 1.21682 1.77225 1.26660 1.21981 0.80478 0.99375 0.98531 1.22550 1.00972 0.94577 0.89979 1.61908 1.13349 1.47648 1.03245 1.19370 0.96243 0.89004 0.87132 1.21512 0.92893 1.30965 1.10259 0.91399 1.25866 1.02575 0.95109 0.95977 1.70096 1.36093 1.34968 1.16498 0.85377 0.79582 0.77764 0.78152 1.18423 1.20688 1.20846 1.22464 0.89465 0.98010 0.98984 1.21591 0.97323 0.97019 0.83146 0.89558 0.88273 0.88480 0.83263 0.82803 0.75913 0.76283 0.83894 0.89465 0.87160 0.95096 0.89934 1.02116 0.97700 0.92859 0.95986 0.90026 0.87941 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.51 8.00 71.24 0.57 -3.94 16 2 C -0.05 -1.26 5.88 -19.84 -0.12 -1.37 16 3 C -0.10 -2.19 9.67 22.25 0.22 -1.98 16 4 C -0.14 -2.67 9.90 22.40 0.22 -2.45 16 5 C 0.19 3.71 6.75 38.21 0.26 3.97 16 6 N -0.87 -10.72 9.09 -51.37 -0.47 -11.19 16 7 C -0.12 -2.83 9.40 22.40 0.21 -2.62 16 8 C -0.64 -17.07 5.91 22.25 0.13 -16.94 16 9 S 2.71 76.70 5.12 -56.49 -0.29 76.41 16 10 O -0.98 -30.45 15.92 -128.00 -2.04 -32.49 16 11 O -0.97 -30.33 14.10 -128.00 -1.80 -32.14 16 12 N -0.99 -27.89 3.32 -511.35 -1.70 -29.59 16 13 C 0.12 3.48 5.60 86.50 0.48 3.96 16 14 C 0.05 1.72 4.94 86.54 0.43 2.15 16 15 N -0.54 -21.79 4.62 -898.88 -4.15 -25.94 16 16 C 0.21 10.69 4.72 85.56 0.40 11.09 16 17 C -0.52 -28.12 8.41 25.60 0.22 -27.91 16 18 H 0.07 3.58 7.13 -2.91 -0.02 3.56 16 19 C 0.00 0.14 5.46 84.65 0.46 0.60 16 20 N -0.94 -55.14 13.29 21.45 0.28 -54.86 16 21 Si 0.97 43.12 29.54 68.60 2.03 45.14 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 C 0.04 1.37 5.62 86.38 0.49 1.86 16 26 C 0.13 3.70 6.51 86.35 0.56 4.27 16 27 H 0.09 2.21 3.92 -2.39 -0.01 2.20 16 28 H 0.10 2.53 4.05 -2.39 -0.01 2.52 16 29 H 0.10 1.89 8.04 -2.39 -0.02 1.88 16 30 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.41 3.16 8.84 -92.71 -0.82 2.34 16 33 H 0.41 3.94 8.84 -92.71 -0.82 3.12 16 34 H 0.14 3.13 7.33 -2.91 -0.02 3.11 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.11 2.79 4.66 -2.39 -0.01 2.78 16 37 H 0.03 1.10 6.02 -2.39 -0.01 1.09 16 38 H 0.08 3.14 6.67 -2.38 -0.02 3.12 16 39 H -0.04 -2.18 8.13 -2.38 -0.02 -2.20 16 40 H 0.00 0.27 7.97 -2.39 -0.02 0.25 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 2.70 7.99 -2.39 -0.02 2.68 16 44 H 0.10 2.41 7.36 -2.39 -0.02 2.39 16 45 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -70.93 358.86 -4.20 -75.13 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -0.59 Total: 18.83 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 4.53 Total: -29.31 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -6.03 Total: -121.58 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -3.84 Total: -64.63 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 76.70 SS G_CDS: -0.29 Total: 76.41 kcal Total: -70.93 -4.20 -75.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867818273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.562 kcal (2) G-P(sol) polarization free energy of solvation -70.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds