Wall clock time and date at job start Tue Mar 31 2020 23:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38228 * 120.42059 * 2 1 4 4 N 1.31850 * 120.76554 * 180.02562 * 3 2 1 5 5 C 1.31892 * 121.72555 * 0.02562 * 4 3 2 6 6 C 1.38180 * 120.76312 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41548 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.87239 * 195.04140 * 7 6 5 9 9 C 1.54321 * 109.88375 * 74.02012 * 7 6 5 10 10 C 1.55153 * 102.94107 * 218.38696 * 9 7 6 11 11 C 1.54910 * 101.58227 * 35.50465 * 10 9 7 12 12 N 1.47023 * 109.87898 * 316.04887 * 7 6 5 13 13 S 1.65596 * 125.65535 * 298.31366 * 12 7 6 14 14 O 1.42100 * 106.39877 * 28.31053 * 13 12 7 15 15 O 1.42096 * 106.40372 * 161.22825 * 13 12 7 16 16 N 1.65599 * 107.22061 * 274.77105 * 13 12 7 17 17 C 1.46492 * 119.99985 * 275.04726 * 16 13 12 18 18 C 1.46504 * 119.99792 * 95.04614 * 16 13 12 19 19 C 1.50700 * 109.46978 * 95.00098 * 18 16 13 20 20 H 1.08001 * 119.99924 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31512 * 119.99836 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00204 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46769 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47034 * 120.00125 * 23 21 19 26 26 H 1.48502 * 109.46817 * 240.00618 * 23 21 19 27 27 C 1.38632 * 120.42023 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46897 * 269.97410 * 1 2 3 29 29 H 1.09002 * 109.46893 * 29.97716 * 1 2 3 30 30 H 1.08999 * 109.46783 * 149.97533 * 1 2 3 31 31 H 1.08002 * 119.61422 * 0.04751 * 3 2 1 32 32 H 1.07995 * 119.61522 * 180.02562 * 5 4 3 33 33 H 1.08992 * 110.71961 * 336.75372 * 9 7 6 34 34 H 1.09002 * 110.71423 * 99.85013 * 9 7 6 35 35 H 1.09004 * 111.00379 * 153.57670 * 10 9 7 36 36 H 1.08997 * 111.01112 * 277.42885 * 10 9 7 37 37 H 1.09004 * 110.36516 * 81.82549 * 11 10 9 38 38 H 1.08995 * 110.36747 * 204.03858 * 11 10 9 39 39 H 1.08998 * 109.47171 * 84.85070 * 17 16 13 40 40 H 1.08994 * 109.47255 * 204.84943 * 17 16 13 41 41 H 1.08999 * 109.47209 * 324.85444 * 17 16 13 42 42 H 1.09003 * 109.46777 * 215.00010 * 18 16 13 43 43 H 1.08996 * 109.47206 * 335.00376 * 18 16 13 44 44 H 0.96999 * 120.00007 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.78958 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 -0.0015 6 6 3.5948 -1.1471 -0.0026 7 6 4.4027 -2.4193 -0.0032 8 1 3.7657 -3.2626 -0.2701 9 6 5.0208 -2.6491 1.3920 10 6 6.4261 -3.2169 1.0602 11 6 6.7852 -2.4278 -0.2236 12 7 5.5114 -2.3070 -0.9623 13 16 5.3558 -2.0829 -2.5957 14 8 4.1337 -1.3844 -2.7901 15 8 6.6098 -1.5980 -3.0554 16 7 5.1536 -3.5779 -3.2785 17 6 6.3229 -4.3943 -3.6137 18 6 3.8054 -4.0841 -3.5475 19 6 3.4295 -3.7785 -4.9745 20 1 4.1254 -3.2595 -5.6169 21 6 2.1975 -4.1623 -5.4602 22 7 1.3503 -4.7948 -4.6780 23 14 1.7317 -3.7841 -7.2292 24 1 2.8516 -3.0707 -7.8941 25 1 1.4558 -5.0525 -7.9504 26 1 0.5179 -2.9289 -7.2494 27 6 2.2090 -1.1955 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6675 2.1276 0.0008 32 1 5.3047 0.1285 -0.0015 33 1 5.1035 -1.7088 1.9368 34 1 4.4341 -3.3716 1.9593 35 1 7.1333 -3.0022 1.8614 36 1 6.3779 -4.2873 0.8602 37 1 7.1713 -1.4413 0.0331 38 1 7.5165 -2.9784 -0.8152 39 1 6.6410 -4.9523 -2.7330 40 1 6.0634 -5.0907 -4.4109 41 1 7.1345 -3.7472 -3.9464 42 1 3.7839 -5.1624 -3.3890 43 1 3.0958 -3.6036 -2.8740 44 1 0.4834 -5.0645 -5.0196 45 1 1.6889 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867894712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:31 Heat of formation + Delta-G solvation = -60.838620 kcal Electronic energy + Delta-G solvation = -29153.065038 eV Core-core repulsion = 25296.269963 eV Total energy + Delta-G solvation = -3856.795075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45313 -39.28455 -38.32770 -37.25054 -36.85778 -34.54241 -34.48185 -33.54923 -31.85988 -29.70737 -29.12958 -28.17224 -26.82554 -24.63913 -24.19668 -23.80917 -22.50682 -21.76466 -19.82010 -19.01694 -18.52148 -18.36419 -17.93496 -17.54224 -17.14044 -16.63783 -16.28668 -15.65516 -15.31443 -15.09481 -15.06664 -14.67353 -14.49901 -14.18814 -14.08912 -13.99628 -13.92916 -13.70705 -13.51454 -13.38183 -13.32343 -13.18551 -13.07293 -12.98736 -12.96165 -12.65086 -12.50990 -12.43966 -12.15256 -12.02026 -11.97334 -11.77732 -11.61350 -10.64791 -10.59123 -10.46757 -10.09628 -9.82650 -9.64709 -8.24225 -6.35746 -0.45054 0.15718 0.35314 1.34144 1.36751 1.48051 2.02168 2.36068 2.54596 2.82673 3.06551 3.21060 3.44280 3.67438 3.68484 3.82021 3.96849 4.02988 4.07607 4.09542 4.19266 4.32360 4.38215 4.57955 4.62427 4.66776 4.74438 4.80560 4.84358 4.87304 4.95651 4.99178 5.00758 5.04425 5.13521 5.15022 5.18774 5.27526 5.35694 5.39217 5.43926 5.51005 5.67095 5.80594 5.91717 6.07224 6.71623 7.00327 7.32968 8.83281 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009980 B = 0.005502 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.051403 B = 5088.251155 C = 6737.486882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.137 4.137 3 C 0.078 3.922 4 N -0.506 5.506 5 C 0.086 3.914 6 C -0.138 4.138 7 C 0.190 3.810 8 H 0.078 0.922 9 C -0.107 4.107 10 C -0.114 4.114 11 C 0.106 3.894 12 N -1.013 6.013 13 S 2.800 3.200 14 O -0.995 6.995 15 O -1.011 7.011 16 N -1.005 6.005 17 C 0.089 3.911 18 C 0.277 3.723 19 C -0.552 4.552 20 H 0.045 0.955 21 C 0.017 3.983 22 N -0.918 5.918 23 Si 0.951 3.049 24 H -0.274 1.274 25 H -0.266 1.266 26 H -0.278 1.278 27 C -0.076 4.076 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.177 0.823 32 H 0.150 0.850 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.028 0.972 43 H 0.017 0.983 44 H 0.268 0.732 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.642 2.105 16.879 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C -0.079 4.079 4 N -0.214 5.214 5 C -0.071 4.071 6 C -0.141 4.141 7 C 0.083 3.917 8 H 0.096 0.904 9 C -0.146 4.146 10 C -0.153 4.153 11 C -0.018 4.018 12 N -0.854 5.854 13 S 2.811 3.189 14 O -0.979 6.979 15 O -0.995 6.995 16 N -0.846 5.846 17 C -0.057 4.057 18 C 0.153 3.847 19 C -0.591 4.591 20 H 0.064 0.936 21 C -0.183 4.183 22 N -0.558 5.558 23 Si 0.776 3.224 24 H -0.199 1.199 25 H -0.191 1.191 26 H -0.204 1.204 27 C -0.103 4.103 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.194 0.806 32 H 0.167 0.833 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.970 3.654 16.292 17.732 hybrid contribution -0.943 -0.900 -1.374 1.894 sum 5.027 2.754 14.918 15.981 Atomic orbital electron populations 1.20770 0.88059 1.03666 1.03799 1.21245 0.99226 0.93631 0.99748 1.23051 0.89668 0.98689 0.96445 1.67596 1.09504 1.31599 1.12677 1.22483 1.00181 0.87611 0.96815 1.21261 0.95075 0.97084 1.00723 1.20325 0.87034 0.92740 0.91576 0.90404 1.22697 0.96845 1.02992 0.92087 1.22800 0.96198 1.00200 0.96116 1.22416 0.83942 1.01440 0.94047 1.59234 1.14195 1.88959 1.22963 1.01110 0.71818 0.73393 0.72565 1.93583 1.47255 1.71853 1.85164 1.93486 1.45755 1.79762 1.80504 1.57621 1.13642 1.37605 1.75752 1.21561 0.86128 0.95898 1.02065 1.18580 0.76744 0.94605 0.94778 1.21818 1.01193 1.37736 0.98343 0.93626 1.25663 0.96000 0.94681 1.01916 1.69990 1.08463 1.39977 1.37338 0.85615 0.78172 0.78475 0.80130 1.19859 1.19098 1.20380 1.21610 0.93489 0.99345 0.95826 0.88620 0.90102 0.91736 0.80632 0.83278 0.89843 0.87782 0.86855 0.89616 0.90615 0.90043 0.90548 0.90810 0.91503 0.95379 0.96497 0.92291 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 10.04 71.24 0.72 -1.53 16 2 C -0.14 -3.90 5.90 -19.77 -0.12 -4.02 16 3 C 0.08 2.32 10.86 84.69 0.92 3.24 16 4 N -0.51 -17.19 10.36 -195.84 -2.03 -19.21 16 5 C 0.09 2.82 10.12 84.67 0.86 3.68 16 6 C -0.14 -4.31 3.37 -19.77 -0.07 -4.38 16 7 C 0.19 5.11 3.31 44.59 0.15 5.26 16 8 H 0.08 2.22 8.02 -2.39 -0.02 2.20 16 9 C -0.11 -1.78 6.44 31.78 0.20 -1.57 16 10 C -0.11 -1.56 7.08 31.98 0.23 -1.33 16 11 C 0.11 2.21 6.97 86.79 0.60 2.81 16 12 N -1.01 -30.43 2.91 -487.35 -1.42 -31.85 16 13 S 2.80 117.08 6.29 -56.49 -0.36 116.72 16 14 O -0.99 -50.16 15.12 -128.00 -1.94 -52.10 16 15 O -1.01 -44.45 16.45 -128.00 -2.10 -46.55 16 16 N -1.00 -42.80 3.23 -543.25 -1.75 -44.56 16 17 C 0.09 3.03 10.67 127.77 1.36 4.39 16 18 C 0.28 14.16 5.08 85.63 0.43 14.60 16 19 C -0.55 -31.80 9.38 25.60 0.24 -31.56 16 20 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 21 C 0.02 0.99 5.46 84.66 0.46 1.46 16 22 N -0.92 -53.33 13.29 21.45 0.28 -53.04 16 23 Si 0.95 45.08 29.54 68.60 2.03 47.11 16 24 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 C -0.08 -2.36 9.50 22.47 0.21 -2.15 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.51 8.09 -2.39 -0.02 1.49 16 30 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 31 H 0.18 3.99 8.06 -2.91 -0.02 3.96 16 32 H 0.15 4.50 7.86 -2.91 -0.02 4.48 16 33 H 0.08 1.32 7.66 -2.39 -0.02 1.30 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 0.91 8.14 -2.38 -0.02 0.90 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 2.58 8.03 -2.39 -0.02 2.56 16 41 H 0.07 2.20 7.19 -2.39 -0.02 2.18 16 42 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 43 H 0.02 0.94 7.47 -2.39 -0.02 0.92 16 44 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.14 3.99 8.05 -2.91 -0.02 3.97 16 Total: -1.00 -77.94 382.44 -0.11 -78.05 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.97 Total: 16.54 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 6.21 Total: -11.11 kcal Atomic # 7 Polarization: -143.75 SS G_CDS: -4.92 Total: -148.67 kcal Atomic # 8 Polarization: -94.61 SS G_CDS: -4.04 Total: -98.65 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 117.08 SS G_CDS: -0.36 Total: 116.72 kcal Total: -77.94 -0.11 -78.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867894712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.211 kcal (2) G-P(sol) polarization free energy of solvation -77.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds