Wall clock time and date at job start Tue Mar 31 2020 23:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38227 * 120.41763 * 2 1 4 4 N 1.31852 * 120.76099 * 180.02562 * 3 2 1 5 5 C 1.31887 * 121.72549 * 359.70603 * 4 3 2 6 6 C 1.38180 * 120.76739 * 0.57941 * 5 4 3 7 7 C 1.50696 * 120.42128 * 179.70218 * 6 5 4 8 8 H 1.08997 * 109.87391 * 160.73808 * 7 6 5 9 9 C 1.54320 * 110.01582 * 281.84160 * 7 6 5 10 10 C 1.55153 * 102.94324 * 141.67979 * 9 7 6 11 11 C 1.55122 * 101.48918 * 324.33244 * 10 9 7 12 12 N 1.47030 * 109.87870 * 39.72788 * 7 6 5 13 13 S 1.65600 * 125.64896 * 61.45175 * 12 7 6 14 14 O 1.42098 * 106.39944 * 336.45524 * 13 12 7 15 15 O 1.42100 * 106.39842 * 203.53912 * 13 12 7 16 16 N 1.65605 * 107.21916 * 89.99756 * 13 12 7 17 17 C 1.46499 * 119.99669 * 270.00001 * 16 13 12 18 18 C 1.46491 * 119.99863 * 90.00134 * 16 13 12 19 19 C 1.50702 * 109.46957 * 264.99654 * 18 16 13 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 16 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 16 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 C 1.38625 * 120.41846 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47375 * 269.98207 * 1 2 3 29 29 H 1.09008 * 109.47310 * 29.98231 * 1 2 3 30 30 H 1.09002 * 109.47485 * 149.97860 * 1 2 3 31 31 H 1.08002 * 119.61789 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.61592 * 180.31122 * 5 4 3 33 33 H 1.09001 * 110.72390 * 260.04603 * 9 7 6 34 34 H 1.09004 * 110.71718 * 23.31442 * 9 7 6 35 35 H 1.09002 * 111.00350 * 82.57694 * 10 9 7 36 36 H 1.09008 * 111.00499 * 206.38429 * 10 9 7 37 37 H 1.09002 * 110.50294 * 278.45293 * 11 10 9 38 38 H 1.09003 * 110.34543 * 156.05520 * 11 10 9 39 39 H 1.09000 * 109.47063 * 269.99910 * 17 16 13 40 40 H 1.08999 * 109.47705 * 30.00070 * 17 16 13 41 41 H 1.09003 * 109.46644 * 150.00380 * 17 16 13 42 42 H 1.09004 * 109.47166 * 144.99919 * 18 16 13 43 43 H 1.08994 * 109.47507 * 24.99626 * 18 16 13 44 44 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.79425 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.1999 -0.0005 5 6 4.2256 0.0823 0.0047 6 6 3.5948 -1.1471 -0.0010 7 6 4.4026 -2.4192 -0.0017 8 1 3.7832 -3.2517 0.3318 9 6 4.9420 -2.7016 -1.4197 10 6 6.3633 -3.2606 -1.1460 11 6 6.7938 -2.4207 0.0851 12 7 5.5651 -2.2737 0.8866 13 16 5.5045 -1.9855 2.5162 14 8 4.2462 -1.3756 2.7692 15 8 6.7439 -1.3833 2.8635 16 7 5.4713 -3.4578 3.2735 17 6 4.1888 -4.1051 3.5606 18 6 6.7244 -4.1129 3.6564 19 6 7.1356 -5.0807 2.5768 20 1 6.5248 -5.1959 1.6936 21 6 8.2949 -5.8145 2.7138 22 7 8.6565 -6.6550 1.7691 23 14 9.3517 -5.6147 4.2411 24 1 8.9111 -6.5823 5.2778 25 1 10.7732 -5.8716 3.8964 26 1 9.2111 -4.2316 4.7630 27 6 2.2089 -1.1954 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6674 2.1277 -0.0004 32 1 5.3046 0.1285 0.0092 33 1 4.3261 -3.4450 -1.9258 34 1 4.9950 -1.7819 -2.0024 35 1 6.3255 -4.3229 -0.9046 36 1 7.0248 -3.0778 -1.9929 37 1 7.1610 -1.4436 -0.2289 38 1 7.5579 -2.9487 0.6556 39 1 3.8377 -3.7952 4.5449 40 1 3.4580 -3.8143 2.8060 41 1 4.3166 -5.1875 3.5446 42 1 6.5811 -4.6524 4.5926 43 1 7.5028 -3.3610 3.7859 44 1 9.4719 -7.1715 1.8657 45 1 1.6888 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867894713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:35 Heat of formation + Delta-G solvation = -34.295351 kcal Electronic energy + Delta-G solvation = -29238.735185 eV Core-core repulsion = 25383.091112 eV Total energy + Delta-G solvation = -3855.644073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.42776 -38.12992 -36.73353 -35.65588 -35.28942 -33.56662 -32.50451 -32.45631 -30.65870 -28.47115 -27.97509 -27.30548 -25.21522 -23.50755 -22.77520 -21.97654 -21.30375 -20.64087 -18.37828 -17.53910 -17.21863 -16.84391 -16.74754 -16.31796 -15.67078 -15.30065 -14.57558 -14.33685 -14.26101 -13.80001 -13.62859 -13.37238 -13.14609 -13.02181 -12.97583 -12.77676 -12.64028 -12.55406 -12.46622 -12.30810 -12.05856 -11.87855 -11.58655 -11.34860 -11.31675 -11.29563 -11.11581 -10.83788 -10.75079 -10.56277 -10.55495 -10.20377 -9.63341 -9.53553 -9.41987 -8.87792 -8.69470 -8.58214 -8.13481 -6.20641 -4.20950 1.06834 1.21207 1.37191 3.22012 3.29992 3.36536 3.39701 3.82018 4.05194 4.31967 4.42618 4.53976 4.71173 4.78366 4.82067 5.00889 5.02871 5.07974 5.13370 5.16579 5.25380 5.44120 5.46067 5.49581 5.60947 5.72751 5.75547 5.87105 5.89505 5.95389 6.05092 6.05652 6.11539 6.15767 6.23312 6.32336 6.37377 6.53212 6.59841 6.69574 6.78759 6.80608 7.07285 7.36002 7.49953 8.05810 8.36688 8.82683 9.40591 10.91279 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.004166 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.516561 B = 6718.820704 C = 7156.245593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.138 4.138 3 C 0.091 3.909 4 N -0.480 5.480 5 C 0.106 3.894 6 C -0.129 4.129 7 C 0.199 3.801 8 H 0.082 0.918 9 C -0.117 4.117 10 C -0.125 4.125 11 C 0.122 3.878 12 N -1.007 6.007 13 S 2.797 3.203 14 O -0.984 6.984 15 O -0.976 6.976 16 N -0.991 5.991 17 C 0.107 3.893 18 C 0.212 3.788 19 C -0.541 4.541 20 H 0.083 0.917 21 C 0.078 3.922 22 N -0.892 5.892 23 Si 0.865 3.135 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.261 1.261 27 C -0.061 4.061 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.046 0.954 44 H 0.265 0.735 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.994 8.030 -6.552 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.140 4.140 3 C -0.066 4.066 4 N -0.187 5.187 5 C -0.051 4.051 6 C -0.133 4.133 7 C 0.091 3.909 8 H 0.100 0.900 9 C -0.156 4.156 10 C -0.164 4.164 11 C -0.003 4.003 12 N -0.844 5.844 13 S 2.806 3.194 14 O -0.968 6.968 15 O -0.960 6.960 16 N -0.832 5.832 17 C -0.040 4.040 18 C 0.088 3.912 19 C -0.580 4.580 20 H 0.101 0.899 21 C -0.126 4.126 22 N -0.530 5.530 23 Si 0.691 3.309 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.185 1.185 27 C -0.088 4.088 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.390 9.564 -6.052 16.781 hybrid contribution 0.237 -1.383 0.711 1.573 sum -12.153 8.181 -5.340 15.593 Atomic orbital electron populations 1.20694 0.90376 1.02786 1.02582 1.20842 0.97346 0.94178 1.01648 1.22588 0.90046 0.97277 0.96716 1.67650 1.08344 1.31135 1.11605 1.22468 1.00134 0.87229 0.95272 1.21199 0.94658 0.96962 1.00453 1.20029 0.86448 0.92799 0.91599 0.90025 1.22673 0.97417 1.01447 0.94054 1.22799 0.94966 1.01203 0.97395 1.22061 0.86689 0.99125 0.92458 1.59199 1.12130 1.88300 1.24805 1.01475 0.72799 0.73388 0.71702 1.93572 1.44133 1.74953 1.84181 1.93570 1.45372 1.75063 1.82018 1.57512 1.12735 1.39809 1.73173 1.21238 0.83577 0.99675 0.99505 1.19632 0.80586 0.94100 0.96885 1.21436 1.08485 1.22362 1.05690 0.89938 1.24830 0.97084 0.94549 0.96091 1.69877 1.24409 1.25512 1.33153 0.87007 0.80337 0.79606 0.83914 1.20011 1.20846 1.18498 1.21233 0.93051 0.98207 0.96304 0.90926 0.91393 0.91434 0.83215 0.83397 0.90176 0.90823 0.89450 0.90358 0.92241 0.88560 0.93687 0.92797 0.90565 0.95055 0.93587 0.92482 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.04 36.00 0.36 -0.50 16 2 C -0.14 -1.62 5.90 -104.48 -0.62 -2.24 16 3 C 0.09 1.18 10.86 -17.55 -0.19 0.99 16 4 N -0.48 -7.55 10.36 -13.25 -0.14 -7.68 16 5 C 0.11 1.67 10.18 -17.55 -0.18 1.49 16 6 C -0.13 -1.85 3.41 -104.48 -0.36 -2.21 16 7 C 0.20 2.78 3.28 -68.10 -0.22 2.56 16 8 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 9 C -0.12 -1.35 6.46 -24.90 -0.16 -1.52 16 10 C -0.12 -1.67 7.10 -24.47 -0.17 -1.84 16 11 C 0.12 1.95 6.99 -2.41 -0.02 1.94 16 12 N -1.01 -17.02 2.74 -105.51 -0.29 -17.31 16 13 S 2.80 56.15 6.26 -107.50 -0.67 55.48 16 14 O -0.98 -20.12 15.31 -57.17 -0.88 -20.99 16 15 O -0.98 -22.58 16.27 -57.17 -0.93 -23.51 16 16 N -0.99 -20.11 3.23 -123.06 -0.40 -20.50 16 17 C 0.11 1.79 10.31 59.85 0.62 2.40 16 18 C 0.21 4.91 4.48 -5.20 -0.02 4.88 16 19 C -0.54 -13.84 9.94 -34.44 -0.34 -14.18 16 20 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 21 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 22 N -0.89 -25.07 13.96 55.43 0.77 -24.30 16 23 Si 0.86 20.38 27.47 -169.99 -4.67 15.71 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 27 C -0.06 -0.77 9.51 -39.28 -0.37 -1.15 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.44 8.09 -51.92 -0.42 0.02 16 30 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.15 2.29 7.73 -52.49 -0.41 1.88 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.79 7.80 -51.93 -0.40 0.39 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 41 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 42 H 0.03 0.70 7.54 -51.93 -0.39 0.31 16 43 H 0.05 1.13 5.96 -51.93 -0.31 0.82 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -32.52 378.87 -10.25 -42.77 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.99 Total: 2.00 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.77 Total: -7.38 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -0.05 Total: -69.79 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.81 Total: -44.50 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Atomic # 16 Polarization: 56.15 SS G_CDS: -0.67 Total: 55.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.52 -10.25 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867894713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.472 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds