Wall clock time and date at job start Tue Mar 31 2020 23:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38227 * 120.41763 * 2 1 4 4 N 1.31852 * 120.76099 * 180.02562 * 3 2 1 5 5 C 1.31887 * 121.72549 * 359.70603 * 4 3 2 6 6 C 1.38180 * 120.76739 * 0.57941 * 5 4 3 7 7 C 1.50696 * 120.42128 * 179.70218 * 6 5 4 8 8 H 1.08997 * 109.87391 * 160.73808 * 7 6 5 9 9 C 1.54320 * 110.01582 * 281.84160 * 7 6 5 10 10 C 1.55153 * 102.94324 * 141.67979 * 9 7 6 11 11 C 1.55122 * 101.48918 * 324.33244 * 10 9 7 12 12 N 1.47030 * 109.87870 * 39.72788 * 7 6 5 13 13 S 1.65600 * 125.64896 * 61.45175 * 12 7 6 14 14 O 1.42098 * 106.39944 * 336.45524 * 13 12 7 15 15 O 1.42100 * 106.39842 * 203.53912 * 13 12 7 16 16 N 1.65605 * 107.21916 * 89.99756 * 13 12 7 17 17 C 1.46499 * 119.99669 * 270.00001 * 16 13 12 18 18 C 1.46491 * 119.99863 * 90.00134 * 16 13 12 19 19 C 1.50702 * 109.46957 * 264.99654 * 18 16 13 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 16 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 16 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 C 1.38625 * 120.41846 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47375 * 269.98207 * 1 2 3 29 29 H 1.09008 * 109.47310 * 29.98231 * 1 2 3 30 30 H 1.09002 * 109.47485 * 149.97860 * 1 2 3 31 31 H 1.08002 * 119.61789 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.61592 * 180.31122 * 5 4 3 33 33 H 1.09001 * 110.72390 * 260.04603 * 9 7 6 34 34 H 1.09004 * 110.71718 * 23.31442 * 9 7 6 35 35 H 1.09002 * 111.00350 * 82.57694 * 10 9 7 36 36 H 1.09008 * 111.00499 * 206.38429 * 10 9 7 37 37 H 1.09002 * 110.50294 * 278.45293 * 11 10 9 38 38 H 1.09003 * 110.34543 * 156.05520 * 11 10 9 39 39 H 1.09000 * 109.47063 * 269.99910 * 17 16 13 40 40 H 1.08999 * 109.47705 * 30.00070 * 17 16 13 41 41 H 1.09003 * 109.46644 * 150.00380 * 17 16 13 42 42 H 1.09004 * 109.47166 * 144.99919 * 18 16 13 43 43 H 1.08994 * 109.47507 * 24.99626 * 18 16 13 44 44 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.79425 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.1999 -0.0005 5 6 4.2256 0.0823 0.0047 6 6 3.5948 -1.1471 -0.0010 7 6 4.4026 -2.4192 -0.0017 8 1 3.7832 -3.2517 0.3318 9 6 4.9420 -2.7016 -1.4197 10 6 6.3633 -3.2606 -1.1460 11 6 6.7938 -2.4207 0.0851 12 7 5.5651 -2.2737 0.8866 13 16 5.5045 -1.9855 2.5162 14 8 4.2462 -1.3756 2.7692 15 8 6.7439 -1.3833 2.8635 16 7 5.4713 -3.4578 3.2735 17 6 4.1888 -4.1051 3.5606 18 6 6.7244 -4.1129 3.6564 19 6 7.1356 -5.0807 2.5768 20 1 6.5248 -5.1959 1.6936 21 6 8.2949 -5.8145 2.7138 22 7 8.6565 -6.6550 1.7691 23 14 9.3517 -5.6147 4.2411 24 1 8.9111 -6.5823 5.2778 25 1 10.7732 -5.8716 3.8964 26 1 9.2111 -4.2316 4.7630 27 6 2.2089 -1.1954 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6674 2.1277 -0.0004 32 1 5.3046 0.1285 0.0092 33 1 4.3261 -3.4450 -1.9258 34 1 4.9950 -1.7819 -2.0024 35 1 6.3255 -4.3229 -0.9046 36 1 7.0248 -3.0778 -1.9929 37 1 7.1610 -1.4436 -0.2289 38 1 7.5579 -2.9487 0.6556 39 1 3.8377 -3.7952 4.5449 40 1 3.4580 -3.8143 2.8060 41 1 4.3166 -5.1875 3.5446 42 1 6.5811 -4.6524 4.5926 43 1 7.5028 -3.3610 3.7859 44 1 9.4719 -7.1715 1.8657 45 1 1.6888 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867894713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:35 Heat of formation + Delta-G solvation = -56.125971 kcal Electronic energy + Delta-G solvation = -29239.681832 eV Core-core repulsion = 25383.091112 eV Total energy + Delta-G solvation = -3856.590719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.45727 -39.27500 -38.39319 -37.32920 -36.95935 -34.49288 -34.46219 -33.53564 -31.86389 -30.27961 -29.08829 -28.12342 -26.81522 -24.59740 -23.89361 -23.71300 -22.48995 -21.74715 -19.83293 -19.20774 -18.70300 -18.50057 -17.90863 -17.55619 -17.15687 -16.50513 -16.27374 -15.71292 -15.35277 -15.18655 -14.93776 -14.53335 -14.48360 -14.40161 -14.22355 -14.08355 -13.94066 -13.65470 -13.53593 -13.46835 -13.37065 -13.25716 -13.13988 -13.02762 -12.90343 -12.70875 -12.44406 -12.30113 -12.15575 -12.03540 -11.95986 -11.67338 -11.60899 -10.75169 -10.57931 -10.45259 -10.06969 -9.81193 -9.63237 -8.27283 -6.30172 -0.43541 0.15689 0.36978 1.34271 1.39696 1.48397 1.89731 2.35056 2.48441 2.82866 3.06740 3.17386 3.43322 3.66249 3.69811 3.82860 3.95149 3.99402 4.07650 4.11064 4.20206 4.34186 4.42695 4.60350 4.60817 4.65630 4.69941 4.85197 4.88413 4.89899 4.91414 4.94231 4.97601 4.98862 5.04251 5.14397 5.23740 5.28926 5.29590 5.36719 5.44609 5.46142 5.49888 5.78446 5.83372 6.32578 6.74129 7.02873 7.33563 8.86892 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.004166 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.516561 B = 6718.820704 C = 7156.245593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C 0.077 3.923 4 N -0.509 5.509 5 C 0.079 3.921 6 C -0.136 4.136 7 C 0.192 3.808 8 H 0.092 0.908 9 C -0.103 4.103 10 C -0.117 4.117 11 C 0.116 3.884 12 N -1.007 6.007 13 S 2.805 3.195 14 O -0.989 6.989 15 O -1.014 7.014 16 N -0.999 5.999 17 C 0.098 3.902 18 C 0.218 3.782 19 C -0.531 4.531 20 H 0.062 0.938 21 C 0.030 3.970 22 N -0.929 5.929 23 Si 0.914 3.086 24 H -0.261 1.261 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.070 4.070 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.176 0.824 32 H 0.136 0.864 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.030 0.970 44 H 0.267 0.733 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.400 8.128 -6.912 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C -0.080 4.080 4 N -0.217 5.217 5 C -0.078 4.078 6 C -0.139 4.139 7 C 0.086 3.914 8 H 0.110 0.890 9 C -0.142 4.142 10 C -0.155 4.155 11 C -0.009 4.009 12 N -0.846 5.846 13 S 2.816 3.184 14 O -0.973 6.973 15 O -0.999 6.999 16 N -0.839 5.839 17 C -0.047 4.047 18 C 0.093 3.907 19 C -0.570 4.570 20 H 0.080 0.920 21 C -0.170 4.170 22 N -0.568 5.568 23 Si 0.739 3.261 24 H -0.185 1.185 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.096 4.096 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.193 0.807 32 H 0.154 0.846 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.824 9.663 -6.396 18.815 hybrid contribution 0.869 -1.352 0.756 1.776 sum -13.954 8.310 -5.640 17.193 Atomic orbital electron populations 1.20782 0.87417 1.04577 1.03388 1.21278 0.99407 0.93315 0.99425 1.23138 0.89411 0.99161 0.96323 1.67600 1.09907 1.31522 1.12646 1.22412 0.99920 0.88125 0.97295 1.21206 0.95576 0.96191 1.00939 1.20328 0.85596 0.93234 0.92282 0.89034 1.22659 0.96063 1.02538 0.92892 1.22719 0.96855 0.99267 0.96703 1.22129 0.85774 0.99993 0.92962 1.58946 1.13566 1.88052 1.24067 1.00993 0.71923 0.73234 0.72293 1.93551 1.43887 1.75092 1.84737 1.93512 1.47096 1.76107 1.83141 1.57492 1.12960 1.39709 1.73754 1.21488 0.82393 0.99608 1.01212 1.19391 0.81628 0.93184 0.96518 1.21551 1.07905 1.22067 1.05467 0.92029 1.25492 0.98372 0.94539 0.98574 1.69980 1.25132 1.26803 1.34934 0.86205 0.78894 0.79798 0.81216 1.18547 1.20716 1.18327 1.21641 0.92452 0.99857 0.95660 0.90375 0.89598 0.89786 0.80686 0.84647 0.87578 0.89670 0.91681 0.88101 0.90800 0.92350 0.91964 0.90791 0.90490 0.93850 0.95240 0.92427 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.04 71.24 0.72 -0.56 16 2 C -0.13 -2.74 5.90 -19.77 -0.12 -2.86 16 3 C 0.08 1.87 10.86 84.69 0.92 2.79 16 4 N -0.51 -15.80 10.36 -195.84 -2.03 -17.83 16 5 C 0.08 2.47 10.18 84.67 0.86 3.34 16 6 C -0.14 -3.70 3.41 -19.77 -0.07 -3.76 16 7 C 0.19 5.13 3.28 44.59 0.15 5.28 16 8 H 0.09 2.24 8.04 -2.39 -0.02 2.22 16 9 C -0.10 -2.18 6.46 31.78 0.21 -1.98 16 10 C -0.12 -3.06 7.10 32.06 0.23 -2.83 16 11 C 0.12 3.85 6.99 86.93 0.61 4.45 16 12 N -1.01 -34.25 2.74 -487.71 -1.34 -35.59 16 13 S 2.81 113.64 6.26 -56.49 -0.35 113.28 16 14 O -0.99 -39.91 15.31 -128.00 -1.96 -41.87 16 15 O -1.01 -48.42 16.27 -128.00 -2.08 -50.50 16 16 N -1.00 -40.27 3.23 -543.25 -1.75 -42.02 16 17 C 0.10 3.15 10.31 127.77 1.32 4.46 16 18 C 0.22 10.12 4.48 85.64 0.38 10.50 16 19 C -0.53 -27.59 9.94 25.60 0.25 -27.33 16 20 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 21 C 0.03 1.63 5.47 84.66 0.46 2.09 16 22 N -0.93 -53.11 13.96 21.45 0.30 -52.81 16 23 Si 0.91 41.94 27.47 68.60 1.88 43.82 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.26 -11.73 6.54 99.48 0.65 -11.08 16 27 C -0.07 -1.57 9.51 22.47 0.21 -1.36 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 0.76 8.09 -2.38 -0.02 0.74 16 30 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 31 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 32 H 0.14 4.36 7.73 -2.91 -0.02 4.33 16 33 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.66 7.80 -2.38 -0.02 1.64 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 41 H 0.08 2.44 8.07 -2.39 -0.02 2.43 16 42 H 0.04 1.91 7.54 -2.38 -0.02 1.89 16 43 H 0.03 1.48 5.96 -2.39 -0.01 1.47 16 44 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 45 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -71.54 378.87 -0.28 -71.82 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.92 Total: 19.47 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 6.13 Total: -7.77 kcal Atomic # 7 Polarization: -143.44 SS G_CDS: -4.82 Total: -148.26 kcal Atomic # 8 Polarization: -88.33 SS G_CDS: -4.04 Total: -92.37 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.82 kcal Atomic # 16 Polarization: 113.64 SS G_CDS: -0.35 Total: 113.28 kcal Total: -71.54 -0.28 -71.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867894713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.695 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds