Wall clock time and date at job start Tue Mar 31 2020 22:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99995 * 2 1 4 4 H 1.48500 * 109.47292 * 270.00178 * 3 2 1 5 5 H 1.48497 * 109.47260 * 30.00412 * 3 2 1 6 6 H 1.48503 * 109.46976 * 150.00664 * 3 2 1 7 7 C 1.37882 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99794 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99883 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.46953 * 110.99952 * 170.00287 * 10 9 7 12 12 C 1.53053 * 109.36264 * 183.18664 * 11 10 9 13 13 N 1.46955 * 109.36420 * 301.59220 * 12 11 10 14 14 C 1.46901 * 111.00150 * 183.18703 * 13 12 11 15 15 C 1.50708 * 109.46865 * 170.00143 * 14 13 12 16 16 C 1.38254 * 119.99823 * 270.02267 * 15 14 13 17 17 C 1.38216 * 119.99725 * 180.02562 * 16 15 14 18 18 C 1.38256 * 120.00072 * 359.95675 * 17 16 15 19 19 C 1.38208 * 119.99948 * 359.78465 * 18 17 16 20 20 S 1.76200 * 120.00281 * 180.25337 * 19 18 17 21 21 N 1.65595 * 107.22213 * 270.23935 * 20 19 18 22 22 O 1.42107 * 106.39717 * 23.78116 * 20 19 18 23 23 O 1.42097 * 106.40128 * 156.69772 * 20 19 18 24 24 C 1.38212 * 119.99857 * 90.00671 * 15 14 13 25 25 C 1.46964 * 110.87827 * 59.32274 * 13 12 11 26 26 C 1.46964 * 110.99388 * 293.79630 * 10 9 7 27 27 H 0.97006 * 120.00049 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47111 * 59.99633 * 9 7 2 29 29 H 1.09000 * 109.46976 * 299.99965 * 9 7 2 30 30 H 1.08993 * 109.49616 * 63.21633 * 11 10 9 31 31 H 1.09000 * 109.48849 * 303.14990 * 11 10 9 32 32 H 1.09000 * 109.48668 * 181.62736 * 12 11 10 33 33 H 1.08999 * 109.49288 * 61.56236 * 12 11 10 34 34 H 1.09001 * 109.46646 * 50.00397 * 14 13 12 35 35 H 1.08992 * 109.47206 * 290.00123 * 14 13 12 36 36 H 1.07997 * 120.00486 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.99701 * 179.97438 * 17 16 15 38 38 H 1.07999 * 120.00058 * 180.02562 * 18 17 16 39 39 H 0.96999 * 120.00360 * 149.99346 * 21 20 19 40 40 H 0.96998 * 119.99831 * 330.00100 * 21 20 19 41 41 H 1.08002 * 119.99812 * 359.97438 * 24 15 14 42 42 H 1.08997 * 109.48926 * 60.64983 * 25 13 12 43 43 H 1.09004 * 109.48647 * 180.71472 * 25 13 12 44 44 H 1.08994 * 109.49148 * 296.77706 * 26 10 9 45 45 H 1.08995 * 109.49028 * 56.82766 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5791 -0.0022 11 6 5.4504 -2.6251 -0.2410 12 6 5.9066 -4.0842 -0.3137 13 7 5.5607 -4.7661 0.9413 14 6 6.0503 -6.1511 0.9402 15 6 5.8988 -6.7385 2.3198 16 6 6.9255 -6.6201 3.2381 17 6 6.7867 -7.1593 4.5032 18 6 5.6208 -7.8161 4.8506 19 6 4.5924 -7.9298 3.9343 20 16 3.1039 -8.7611 4.3792 21 7 3.3013 -10.3596 3.9947 22 8 3.0167 -8.6970 5.7962 23 8 2.0921 -8.2625 3.5149 24 6 4.7333 -7.3951 2.6671 25 6 4.1114 -4.7200 1.1801 26 6 3.6551 -3.2609 1.2529 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8744 -0.6801 -0.8911 30 1 5.9696 -2.1220 0.5747 31 1 5.6800 -2.1250 -1.1819 32 1 6.9859 -4.1208 -0.4620 33 1 5.4079 -4.5802 -1.1464 34 1 7.1018 -6.1645 0.6531 35 1 5.4719 -6.7404 0.2289 36 1 7.8363 -6.1071 2.9667 37 1 7.5889 -7.0672 5.2204 38 1 5.5122 -8.2370 5.8392 39 1 2.8443 -11.0425 4.5101 40 1 3.8741 -10.6131 3.2540 41 1 3.9310 -7.4870 1.9499 42 1 3.5922 -5.2232 0.3644 43 1 3.8819 -5.2201 2.1211 44 1 4.1539 -2.7651 2.0855 45 1 2.5760 -3.2240 1.4013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877747851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:14 Heat of formation + Delta-G solvation = -28.959980 kcal Electronic energy + Delta-G solvation = -27395.166870 eV Core-core repulsion = 23539.754156 eV Total energy + Delta-G solvation = -3855.412714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.99814 -38.52576 -37.37340 -36.03714 -35.41243 -33.53160 -32.69976 -31.80125 -31.58098 -30.43568 -28.68434 -26.32278 -23.94693 -23.77393 -22.98877 -21.79134 -21.03211 -19.70490 -19.25802 -18.25964 -17.64015 -17.02257 -16.78389 -16.32527 -15.96876 -15.83511 -15.20015 -14.87110 -14.57435 -14.42139 -14.29343 -14.09983 -13.75268 -13.41944 -13.08118 -12.92474 -12.57814 -12.41665 -12.35801 -12.27849 -12.17039 -12.12740 -11.91737 -11.49697 -11.45673 -11.09223 -10.94391 -10.82675 -10.74430 -10.56171 -10.38871 -10.08747 -9.82262 -9.64938 -9.26775 -9.18371 -8.54344 -8.25383 -7.36061 -6.02367 -3.99828 0.11799 0.52267 0.94375 2.82089 3.14031 3.30143 3.37627 3.39848 3.48027 4.05301 4.20451 4.44141 4.44499 4.57957 4.68014 4.77164 4.89685 5.00015 5.13989 5.23450 5.28681 5.29416 5.48086 5.50255 5.60736 5.62114 5.64410 5.69378 5.77018 5.85894 5.93902 5.99288 6.07552 6.17071 6.29019 6.49879 6.50121 6.66196 6.66788 6.84891 6.97962 7.09148 7.19399 7.61414 7.92175 8.06043 8.68235 9.06130 9.59119 11.10695 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.002850 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.903036 B = 9821.830440 C =11045.530443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.062 3.938 13 N -0.536 5.536 14 C 0.090 3.910 15 C -0.091 4.091 16 C -0.040 4.040 17 C -0.142 4.142 18 C -0.020 4.020 19 C -0.676 4.676 20 S 2.700 3.300 21 N -1.250 6.250 22 O -0.964 6.964 23 O -0.954 6.954 24 C -0.016 4.016 25 C 0.052 3.948 26 C 0.068 3.932 27 H 0.263 0.737 28 H -0.011 1.011 29 H 0.023 0.977 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.420 0.580 40 H 0.416 0.584 41 H 0.141 0.859 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.029 0.971 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.766 -22.310 7.109 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.066 4.066 13 N -0.261 5.261 14 C -0.037 4.037 15 C -0.092 4.092 16 C -0.058 4.058 17 C -0.161 4.161 18 C -0.040 4.040 19 C -0.763 4.763 20 S 2.788 3.212 21 N -0.923 5.923 22 O -0.954 6.954 23 O -0.943 6.943 24 C -0.036 4.036 25 C -0.076 4.076 26 C -0.061 4.061 27 H 0.073 0.927 28 H 0.007 0.993 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.250 0.750 40 H 0.243 0.757 41 H 0.159 0.841 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.811 -21.581 7.519 27.790 hybrid contribution 1.205 0.742 -0.360 1.460 sum 17.016 -20.839 7.159 27.840 Atomic orbital electron populations 1.69898 1.06110 1.26809 1.51027 1.24902 0.94734 0.98833 0.94860 0.86861 0.80311 0.84059 0.78514 1.20194 1.21211 1.19305 1.21034 0.88706 0.94747 1.50333 0.90124 1.20147 0.97098 0.84020 0.95039 1.62123 1.10268 1.19121 1.33902 1.22108 0.90346 0.94613 1.00454 1.22154 0.99469 0.95116 0.89853 1.62231 1.15463 1.13270 1.35125 1.21049 1.01203 0.89524 0.91967 1.19930 0.94138 0.98286 0.96887 1.21392 0.98321 0.93592 0.92520 1.21298 0.98249 0.99551 0.96966 1.20908 0.91342 0.93963 0.97776 1.30594 1.21758 1.20618 1.03373 1.01642 0.73497 0.72430 0.73608 1.53169 1.64893 1.26963 1.47284 1.93595 1.86131 1.85924 1.29704 1.93655 1.54146 1.78758 1.67735 1.20948 0.96691 0.91969 0.93952 1.22370 0.86054 0.98486 1.00663 1.22020 1.01976 0.91478 0.90613 0.92674 0.99346 0.95854 0.95116 0.90898 0.91038 0.93937 0.89779 0.93526 0.85024 0.84962 0.84241 0.75017 0.75700 0.84126 0.93797 0.90799 0.95308 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.15 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.51 -14.73 9.03 -34.44 -0.31 -15.04 16 8 H 0.08 2.53 7.37 -52.49 -0.39 2.15 16 9 C 0.16 4.04 3.79 -4.98 -0.02 4.02 16 10 N -0.53 -11.31 4.70 -235.91 -1.11 -12.42 16 11 C 0.05 0.92 5.61 -3.77 -0.02 0.90 16 12 C 0.06 0.86 5.61 -3.77 -0.02 0.83 16 13 N -0.54 -7.42 4.70 -235.90 -1.11 -8.53 16 14 C 0.09 0.94 5.12 -4.97 -0.03 0.92 16 15 C -0.09 -0.93 4.89 -104.62 -0.51 -1.44 16 16 C -0.04 -0.35 9.70 -39.58 -0.38 -0.74 16 17 C -0.14 -1.16 10.05 -39.58 -0.40 -1.55 16 18 C -0.02 -0.18 9.52 -39.59 -0.38 -0.56 16 19 C -0.68 -6.52 5.97 -39.58 -0.24 -6.75 16 20 S 2.70 25.90 6.28 -107.50 -0.68 25.23 16 21 N -1.25 -6.26 9.52 60.35 0.57 -5.69 16 22 O -0.96 -11.91 17.29 -57.17 -0.99 -12.90 16 23 O -0.95 -13.07 17.28 -57.17 -0.99 -14.06 16 24 C -0.02 -0.16 7.40 -39.58 -0.29 -0.46 16 25 C 0.05 0.85 5.25 -3.76 -0.02 0.83 16 26 C 0.07 1.36 5.43 -3.76 -0.02 1.34 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 29 H 0.02 0.57 7.45 -51.93 -0.39 0.19 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 32 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.71 7.97 -51.93 -0.41 0.30 16 35 H 0.05 0.47 8.06 -51.93 -0.42 0.05 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.14 1.01 7.62 -52.49 -0.40 0.61 16 39 H 0.42 1.42 8.96 -34.47 -0.31 1.11 16 40 H 0.42 1.14 8.96 -34.46 -0.31 0.83 16 41 H 0.14 1.45 7.55 -52.49 -0.40 1.05 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.15 5.95 -51.93 -0.31 0.84 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 2.11 6.79 -51.93 -0.35 1.76 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -37.45 371.80 -11.92 -49.36 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.60 Total: -0.79 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.73 Total: -15.78 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.87 Total: -53.81 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.98 Total: -26.96 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 25.90 SS G_CDS: -0.68 Total: 25.23 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.45 -11.92 -49.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877747851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.404 kcal (2) G-P(sol) polarization free energy of solvation -37.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds