Wall clock time and date at job start Tue Mar 31 2020 22:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99995 * 2 1 4 4 H 1.48500 * 109.47292 * 270.00178 * 3 2 1 5 5 H 1.48497 * 109.47260 * 30.00412 * 3 2 1 6 6 H 1.48503 * 109.46976 * 150.00664 * 3 2 1 7 7 C 1.37882 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99794 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99883 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.46953 * 110.99952 * 170.00287 * 10 9 7 12 12 C 1.53053 * 109.36264 * 183.18664 * 11 10 9 13 13 N 1.46955 * 109.36420 * 301.59220 * 12 11 10 14 14 C 1.46901 * 111.00150 * 183.18703 * 13 12 11 15 15 C 1.50708 * 109.46865 * 170.00143 * 14 13 12 16 16 C 1.38254 * 119.99823 * 270.02267 * 15 14 13 17 17 C 1.38216 * 119.99725 * 180.02562 * 16 15 14 18 18 C 1.38256 * 120.00072 * 359.95675 * 17 16 15 19 19 C 1.38208 * 119.99948 * 359.78465 * 18 17 16 20 20 S 1.76200 * 120.00281 * 180.25337 * 19 18 17 21 21 N 1.65595 * 107.22213 * 270.23935 * 20 19 18 22 22 O 1.42107 * 106.39717 * 23.78116 * 20 19 18 23 23 O 1.42097 * 106.40128 * 156.69772 * 20 19 18 24 24 C 1.38212 * 119.99857 * 90.00671 * 15 14 13 25 25 C 1.46964 * 110.87827 * 59.32274 * 13 12 11 26 26 C 1.46964 * 110.99388 * 293.79630 * 10 9 7 27 27 H 0.97006 * 120.00049 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47111 * 59.99633 * 9 7 2 29 29 H 1.09000 * 109.46976 * 299.99965 * 9 7 2 30 30 H 1.08993 * 109.49616 * 63.21633 * 11 10 9 31 31 H 1.09000 * 109.48849 * 303.14990 * 11 10 9 32 32 H 1.09000 * 109.48668 * 181.62736 * 12 11 10 33 33 H 1.08999 * 109.49288 * 61.56236 * 12 11 10 34 34 H 1.09001 * 109.46646 * 50.00397 * 14 13 12 35 35 H 1.08992 * 109.47206 * 290.00123 * 14 13 12 36 36 H 1.07997 * 120.00486 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.99701 * 179.97438 * 17 16 15 38 38 H 1.07999 * 120.00058 * 180.02562 * 18 17 16 39 39 H 0.96999 * 120.00360 * 149.99346 * 21 20 19 40 40 H 0.96998 * 119.99831 * 330.00100 * 21 20 19 41 41 H 1.08002 * 119.99812 * 359.97438 * 24 15 14 42 42 H 1.08997 * 109.48926 * 60.64983 * 25 13 12 43 43 H 1.09004 * 109.48647 * 180.71472 * 25 13 12 44 44 H 1.08994 * 109.49148 * 296.77706 * 26 10 9 45 45 H 1.08995 * 109.49028 * 56.82766 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5791 -0.0022 11 6 5.4504 -2.6251 -0.2410 12 6 5.9066 -4.0842 -0.3137 13 7 5.5607 -4.7661 0.9413 14 6 6.0503 -6.1511 0.9402 15 6 5.8988 -6.7385 2.3198 16 6 6.9255 -6.6201 3.2381 17 6 6.7867 -7.1593 4.5032 18 6 5.6208 -7.8161 4.8506 19 6 4.5924 -7.9298 3.9343 20 16 3.1039 -8.7611 4.3792 21 7 3.3013 -10.3596 3.9947 22 8 3.0167 -8.6970 5.7962 23 8 2.0921 -8.2625 3.5149 24 6 4.7333 -7.3951 2.6671 25 6 4.1114 -4.7200 1.1801 26 6 3.6551 -3.2609 1.2529 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8744 -0.6801 -0.8911 30 1 5.9696 -2.1220 0.5747 31 1 5.6800 -2.1250 -1.1819 32 1 6.9859 -4.1208 -0.4620 33 1 5.4079 -4.5802 -1.1464 34 1 7.1018 -6.1645 0.6531 35 1 5.4719 -6.7404 0.2289 36 1 7.8363 -6.1071 2.9667 37 1 7.5889 -7.0672 5.2204 38 1 5.5122 -8.2370 5.8392 39 1 2.8443 -11.0425 4.5101 40 1 3.8741 -10.6131 3.2540 41 1 3.9310 -7.4870 1.9499 42 1 3.5922 -5.2232 0.3644 43 1 3.8819 -5.2201 2.1211 44 1 4.1539 -2.7651 2.0855 45 1 2.5760 -3.2240 1.4013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877747851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:13 Heat of formation + Delta-G solvation = -61.365795 kcal Electronic energy + Delta-G solvation = -27396.572091 eV Core-core repulsion = 23539.754156 eV Total energy + Delta-G solvation = -3856.817935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.86362 -39.72347 -38.28763 -36.96287 -36.80065 -34.66394 -34.08203 -32.92848 -32.34585 -31.75455 -30.32507 -27.71059 -25.25996 -24.77971 -24.07317 -22.98738 -22.47080 -20.70229 -20.42540 -18.99139 -18.94358 -18.35722 -17.68151 -17.31459 -17.07815 -16.54864 -16.41013 -16.14210 -15.89365 -15.77945 -15.46433 -15.36993 -15.14897 -14.76880 -14.44162 -13.92460 -13.88548 -13.57553 -13.31293 -13.25686 -13.21031 -13.17468 -13.10665 -12.95040 -12.75293 -12.36249 -12.33113 -12.20897 -11.99276 -11.84617 -11.74981 -11.53369 -11.35310 -11.30558 -10.79605 -10.36282 -9.94931 -9.36251 -9.05792 -8.29718 -6.33863 -0.63001 -0.20027 0.23538 1.32973 1.35313 1.46049 2.14317 2.33115 2.40359 2.73135 3.02592 3.07238 3.19890 3.39347 3.71713 3.85190 3.95974 4.02098 4.15793 4.21108 4.27173 4.29096 4.38053 4.46012 4.50818 4.62486 4.67555 4.76280 4.79928 4.85653 4.93856 4.95306 4.98335 5.02616 5.07236 5.15661 5.24620 5.28452 5.45844 5.50679 5.82945 5.89691 5.97980 6.09955 6.32780 6.33818 6.64057 6.72206 7.29773 8.87088 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.002850 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.903036 B = 9821.830440 C =11045.530443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.951 3.049 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.520 4.520 8 H 0.034 0.966 9 C 0.174 3.826 10 N -0.545 5.545 11 C 0.050 3.950 12 C 0.068 3.932 13 N -0.538 5.538 14 C 0.092 3.908 15 C -0.104 4.104 16 C -0.039 4.039 17 C -0.140 4.140 18 C -0.027 4.027 19 C -0.678 4.678 20 S 2.719 3.281 21 N -1.229 6.229 22 O -0.994 6.994 23 O -1.002 7.002 24 C -0.034 4.034 25 C 0.067 3.933 26 C 0.071 3.929 27 H 0.267 0.733 28 H -0.016 1.016 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.039 0.961 34 H 0.115 0.885 35 H 0.049 0.951 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.430 0.570 40 H 0.429 0.571 41 H 0.132 0.868 42 H 0.034 0.966 43 H 0.078 0.922 44 H 0.022 0.978 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.854 -22.613 7.177 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.558 4.558 8 H 0.052 0.948 9 C 0.047 3.953 10 N -0.270 5.270 11 C -0.078 4.078 12 C -0.060 4.060 13 N -0.263 5.263 14 C -0.035 4.035 15 C -0.105 4.105 16 C -0.058 4.058 17 C -0.158 4.158 18 C -0.047 4.047 19 C -0.767 4.767 20 S 2.809 3.191 21 N -0.909 5.909 22 O -0.983 6.983 23 O -0.991 6.991 24 C -0.054 4.054 25 C -0.062 4.062 26 C -0.057 4.057 27 H 0.076 0.924 28 H 0.002 0.998 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.057 0.943 34 H 0.133 0.867 35 H 0.068 0.932 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.171 0.829 39 H 0.263 0.737 40 H 0.259 0.741 41 H 0.150 0.850 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.041 0.959 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 19.913 -21.937 7.581 30.582 hybrid contribution -0.060 0.695 -0.353 0.781 sum 19.853 -21.242 7.228 29.960 Atomic orbital electron populations 1.70063 1.08197 1.28169 1.52440 1.25895 0.95651 1.03299 0.94242 0.85655 0.79172 0.78325 0.79402 1.18587 1.20716 1.17678 1.21263 0.91180 0.93204 1.50146 0.94780 1.19900 0.94165 0.86330 0.94941 1.62032 1.13627 1.17028 1.34339 1.22278 0.87153 0.97489 1.00884 1.22170 1.01679 0.92560 0.89584 1.62205 1.12979 1.15823 1.35320 1.21162 1.02754 0.87217 0.92381 1.20000 0.94475 0.98765 0.97274 1.21698 0.98608 0.93112 0.92371 1.21667 0.98538 0.98309 0.97320 1.21219 0.91380 0.93924 0.98156 1.30416 1.21640 1.21170 1.03483 1.00681 0.73021 0.73045 0.72343 1.52690 1.65094 1.25294 1.47810 1.93550 1.86701 1.86732 1.31357 1.93606 1.56627 1.80245 1.68650 1.20998 0.97039 0.93030 0.94285 1.22089 0.88241 0.95207 1.00637 1.21889 0.99556 0.94126 0.90149 0.92385 0.99803 0.94936 0.95077 0.89783 0.86962 0.94310 0.86691 0.93246 0.82779 0.82079 0.82853 0.73701 0.74052 0.84988 0.94795 0.90407 0.95945 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 2 C 0.01 0.38 5.47 84.66 0.46 0.84 16 3 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 7 C -0.52 -31.29 9.03 25.60 0.23 -31.06 16 8 H 0.03 2.30 7.37 -2.91 -0.02 2.28 16 9 C 0.17 8.66 3.79 85.56 0.32 8.98 16 10 N -0.55 -23.52 4.70 -900.30 -4.23 -27.76 16 11 C 0.05 1.62 5.61 86.31 0.48 2.10 16 12 C 0.07 1.67 5.61 86.31 0.48 2.15 16 13 N -0.54 -13.75 4.70 -900.25 -4.23 -17.98 16 14 C 0.09 1.65 5.12 85.56 0.44 2.08 16 15 C -0.10 -1.90 4.89 -19.86 -0.10 -1.99 16 16 C -0.04 -0.57 9.70 22.27 0.22 -0.35 16 17 C -0.14 -1.83 10.05 22.27 0.22 -1.61 16 18 C -0.03 -0.43 9.52 22.27 0.21 -0.22 16 19 C -0.68 -12.64 5.97 22.27 0.13 -12.51 16 20 S 2.72 53.03 6.28 -56.49 -0.35 52.67 16 21 N -1.23 -11.39 9.52 37.02 0.35 -11.04 16 22 O -0.99 -24.75 17.29 -128.00 -2.21 -26.96 16 23 O -1.00 -28.98 17.28 -128.00 -2.21 -31.19 16 24 C -0.03 -0.68 7.40 22.27 0.16 -0.52 16 25 C 0.07 2.20 5.25 86.31 0.45 2.65 16 26 C 0.07 3.00 5.43 86.31 0.47 3.47 16 27 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 28 H -0.02 -0.79 7.18 -2.39 -0.02 -0.81 16 29 H 0.03 1.56 7.45 -2.39 -0.02 1.54 16 30 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 32 H 0.11 1.93 8.07 -2.39 -0.02 1.92 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.11 1.40 7.97 -2.39 -0.02 1.38 16 35 H 0.05 0.88 8.06 -2.39 -0.02 0.87 16 36 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.15 1.92 7.62 -2.91 -0.02 1.89 16 39 H 0.43 2.48 8.96 -96.75 -0.87 1.61 16 40 H 0.43 1.84 8.96 -96.75 -0.87 0.97 16 41 H 0.13 2.82 7.55 -2.91 -0.02 2.80 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 2.49 5.95 -2.38 -0.01 2.48 16 44 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 2.59 6.79 -2.39 -0.02 2.57 16 Total: -1.00 -84.79 371.80 -7.28 -92.08 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -0.77 Total: 9.83 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: 4.20 Total: -25.97 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -7.81 Total: -117.50 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -4.43 Total: -58.15 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Atomic # 16 Polarization: 53.03 SS G_CDS: -0.35 Total: 52.67 kcal Total: -84.79 -7.28 -92.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877747851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.710 kcal (2) G-P(sol) polarization free energy of solvation -84.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds