Wall clock time and date at job start Tue Mar 31 2020 22:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99740 * 2 1 4 4 H 1.48501 * 109.46991 * 269.99401 * 3 2 1 5 5 H 1.48493 * 109.47564 * 29.99836 * 3 2 1 6 6 H 1.48502 * 109.47010 * 149.99946 * 3 2 1 7 7 C 1.37880 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99762 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99629 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46750 * 180.02562 * 9 7 2 11 11 C 1.46962 * 111.00018 * 170.00242 * 10 9 7 12 12 C 1.53046 * 109.36284 * 183.18540 * 11 10 9 13 13 N 1.46948 * 109.36544 * 301.59896 * 12 11 10 14 14 C 1.46908 * 111.00013 * 183.19139 * 13 12 11 15 15 C 1.50700 * 109.47148 * 169.99913 * 14 13 12 16 16 C 1.33644 * 126.03938 * 90.00134 * 15 14 13 17 17 N 1.31771 * 114.50041 * 180.02562 * 16 15 14 18 18 C 1.29028 * 117.12878 * 359.97438 * 17 16 15 19 19 C 1.50701 * 124.91855 * 180.02562 * 18 17 16 20 20 O 1.43746 * 109.62962 * 148.90529 * 19 18 17 21 21 C 1.44589 * 104.92066 * 215.71134 * 20 19 18 22 22 C 1.54915 * 101.63503 * 36.26782 * 21 20 19 23 23 O 1.43362 * 109.63083 * 29.69290 * 19 18 17 24 24 S 1.70979 * 110.16576 * 359.97438 * 18 17 16 25 25 C 1.46954 * 110.88507 * 59.32371 * 13 12 11 26 26 C 1.46955 * 110.99777 * 293.79801 * 10 9 7 27 27 H 0.96998 * 120.00010 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47146 * 60.00476 * 9 7 2 29 29 H 1.08999 * 109.47507 * 300.00010 * 9 7 2 30 30 H 1.08994 * 109.48444 * 63.21717 * 11 10 9 31 31 H 1.08998 * 109.48264 * 303.15262 * 11 10 9 32 32 H 1.09003 * 109.48605 * 181.62873 * 12 11 10 33 33 H 1.09003 * 109.48870 * 61.56859 * 12 11 10 34 34 H 1.08996 * 109.47370 * 49.99593 * 14 13 12 35 35 H 1.09005 * 109.46596 * 289.99719 * 14 13 12 36 36 H 1.08002 * 122.74545 * 359.72316 * 16 15 14 37 37 H 1.08994 * 109.63092 * 269.29984 * 19 18 17 38 38 H 1.09004 * 111.08617 * 278.15721 * 21 20 19 39 39 H 1.08996 * 110.97985 * 154.33721 * 21 20 19 40 40 H 1.08998 * 110.69509 * 205.96255 * 22 21 20 41 41 H 1.08998 * 110.69348 * 82.75868 * 22 21 20 42 42 H 1.09001 * 109.49176 * 60.64232 * 25 13 12 43 43 H 1.08997 * 109.49585 * 180.71356 * 25 13 12 44 44 H 1.09003 * 109.49301 * 296.78168 * 26 10 9 45 45 H 1.09003 * 109.48994 * 56.84685 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5207 -4.8939 0.2400 12 6 2.5562 -6.0186 0.3129 13 7 3.3201 -6.0596 -0.9417 14 6 4.2748 -7.1762 -0.9406 15 6 4.8598 -7.3384 -2.3199 16 6 5.9626 -6.7409 -2.7814 17 7 6.2690 -7.0458 -4.0262 18 6 5.4865 -7.8675 -4.6404 19 6 5.6705 -8.3353 -6.0611 20 8 5.1591 -9.6716 -6.1996 21 6 6.0505 -10.3160 -7.1380 22 6 7.4151 -9.6932 -6.7508 23 8 7.0661 -8.3417 -6.3892 24 16 4.2113 -8.3499 -3.6086 25 6 4.0051 -4.7815 -1.1800 26 6 2.9696 -3.6568 -1.2529 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 0.8258 -5.0917 -0.5761 31 1 0.9725 -4.8428 1.1807 32 1 2.0481 -6.9716 0.4607 33 1 3.2346 -5.8348 1.1460 34 1 3.7606 -8.0935 -0.6539 35 1 5.0741 -6.9700 -0.2288 36 1 6.5515 -6.0601 -2.1847 37 1 5.1382 -7.6675 -6.7384 38 1 5.7852 -10.0666 -8.1655 39 1 6.0583 -11.3959 -6.9904 40 1 8.0971 -9.7006 -7.6011 41 1 7.8512 -10.2189 -5.9013 42 1 4.7000 -4.5836 -0.3639 43 1 4.5534 -4.8325 -2.1207 44 1 2.2911 -3.8405 -2.0860 45 1 3.4777 -2.7038 -1.4007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877748131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:48 Heat of formation + Delta-G solvation = -14.930132 kcal Electronic energy + Delta-G solvation = -26800.178264 eV Core-core repulsion = 22945.373930 eV Total energy + Delta-G solvation = -3854.804334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94440 -39.76300 -38.60917 -35.54720 -35.37164 -32.74670 -31.92211 -30.58415 -30.24647 -28.32574 -26.97882 -25.35587 -23.93761 -23.85202 -23.14555 -22.70107 -21.34969 -19.69813 -19.16094 -18.51238 -17.70053 -17.01079 -16.32406 -16.30813 -15.94232 -15.61961 -14.95471 -14.89008 -14.58310 -14.35879 -14.21676 -14.03079 -13.93962 -13.68694 -13.52440 -13.21681 -13.19630 -12.65236 -12.36581 -12.08995 -12.02988 -11.70758 -11.31512 -11.13669 -10.86609 -10.82239 -10.74226 -10.66257 -10.51760 -10.40378 -10.29387 -9.74964 -9.62231 -9.33365 -9.16758 -8.98945 -8.43151 -8.21488 -7.22923 -6.01676 -4.03055 0.50025 1.13735 1.66368 2.64266 2.82078 3.32777 3.38508 3.38845 3.43128 4.01978 4.07755 4.15238 4.40843 4.43372 4.52742 4.71206 4.76152 4.91884 4.93658 4.96041 4.98879 5.16294 5.25858 5.33694 5.33963 5.42696 5.52260 5.59109 5.75773 5.80493 5.88903 5.99598 6.05782 6.17298 6.41700 6.46326 6.58097 6.69612 7.11396 7.13723 7.34331 7.37658 7.60520 7.80799 8.09553 8.21078 8.55864 9.04378 9.61141 11.09184 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.002267 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.771373 B =12348.799555 C =13118.117837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.062 3.938 13 N -0.536 5.536 14 C 0.129 3.871 15 C -0.201 4.201 16 C 0.033 3.967 17 N -0.439 5.439 18 C -0.008 4.008 19 C 0.319 3.681 20 O -0.372 6.372 21 C 0.018 3.982 22 C 0.017 3.983 23 O -0.356 6.356 24 S 0.190 5.810 25 C 0.055 3.945 26 C 0.069 3.931 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.176 0.824 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.028 0.972 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.974 -24.322 -11.422 29.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.065 4.065 13 N -0.261 5.261 14 C -0.001 4.001 15 C -0.323 4.323 16 C -0.120 4.120 17 N -0.155 5.155 18 C -0.285 4.285 19 C 0.220 3.780 20 O -0.292 6.292 21 C -0.058 4.058 22 C -0.060 4.060 23 O -0.276 6.276 24 S 0.445 5.555 25 C -0.073 4.073 26 C -0.060 4.060 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.193 0.807 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.355 -24.573 -11.729 29.501 hybrid contribution 0.923 1.534 0.412 1.837 sum 12.278 -23.039 -11.317 28.454 Atomic orbital electron populations 1.69960 1.06054 1.26756 1.51032 1.24995 0.94870 0.99315 0.95469 0.86506 0.79796 0.83125 0.78045 1.20726 1.21264 1.19800 1.21148 0.93434 0.89957 1.50014 0.91947 1.19699 0.90038 0.87282 0.96114 1.62301 1.28091 1.02746 1.33230 1.22059 0.94681 0.89941 1.00575 1.22174 0.96077 0.98809 0.89484 1.62198 1.25249 1.03182 1.35487 1.20395 0.94840 0.95945 0.88934 1.26097 1.00314 1.04119 1.01806 1.21745 0.96979 1.02244 0.90999 1.66099 1.28638 1.12762 1.07960 1.26996 0.97812 1.02356 1.01375 1.22074 0.81686 0.85708 0.88514 1.89209 1.51277 1.24270 1.64442 1.24457 0.87362 0.99855 0.94093 1.24299 0.97549 0.82670 1.01455 1.89059 1.23500 1.27280 1.87763 1.84005 1.26553 1.41685 1.03290 1.22326 0.96307 0.88288 1.00334 1.21971 0.95394 0.97351 0.91272 0.92937 0.99073 0.95202 0.95091 0.90862 0.91044 0.94002 0.89621 0.92437 0.80744 0.86785 0.89881 0.86784 0.87634 0.90481 0.94113 0.91058 0.95386 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.34 8.47 -34.44 -0.29 -14.63 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 9 C 0.19 5.11 4.72 -4.97 -0.02 5.09 16 10 N -0.54 -11.75 4.70 -235.91 -1.11 -12.86 16 11 C 0.06 1.03 5.61 -3.77 -0.02 1.01 16 12 C 0.06 0.91 5.61 -3.77 -0.02 0.89 16 13 N -0.54 -7.79 4.70 -235.91 -1.11 -8.90 16 14 C 0.13 1.50 5.50 -4.97 -0.03 1.47 16 15 C -0.20 -2.45 5.51 -35.92 -0.20 -2.65 16 16 C 0.03 0.43 9.77 -19.19 -0.19 0.24 16 17 N -0.44 -6.20 10.36 -11.86 -0.12 -6.32 16 18 C -0.01 -0.10 6.95 -13.46 -0.09 -0.19 16 19 C 0.32 3.32 4.56 36.01 0.16 3.49 16 20 O -0.37 -3.36 10.94 -59.05 -0.65 -4.01 16 21 C 0.02 0.09 7.95 38.17 0.30 0.40 16 22 C 0.02 0.10 8.07 38.17 0.31 0.41 16 23 O -0.36 -3.81 11.07 -59.05 -0.65 -4.46 16 24 S 0.19 2.20 22.76 -107.50 -2.45 -0.25 16 25 C 0.06 0.89 5.37 -3.77 -0.02 0.87 16 26 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 29 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 32 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 35 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.18 2.00 8.06 -52.49 -0.42 1.57 16 37 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.09 6.15 -51.93 -0.32 0.77 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.86 6.79 -51.93 -0.35 1.51 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -33.26 375.80 -11.86 -45.12 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.92 Total: -3.82 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.23 Total: -0.79 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -1.60 Total: -54.26 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -1.30 Total: -8.47 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.45 Total: -0.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.26 -11.86 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877748131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.185 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds