Wall clock time and date at job start Tue Mar 31 2020 22:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00346 * 2 1 4 4 H 1.48494 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47045 * 300.00506 * 3 2 1 6 6 H 1.48504 * 109.46806 * 60.00358 * 3 2 1 7 7 C 1.37879 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00194 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.63656 * 300.70506 * 9 7 2 11 11 C 1.55148 * 110.72234 * 177.56040 * 9 7 2 12 12 C 1.54909 * 101.58117 * 205.95517 * 11 9 7 13 13 N 1.47423 * 104.83278 * 37.01061 * 12 11 9 14 14 C 1.34771 * 125.65377 * 155.91037 * 13 12 11 15 15 O 1.21535 * 120.00491 * 179.97438 * 14 13 12 16 16 C 1.48027 * 119.99642 * 359.97438 * 14 13 12 17 17 N 1.32662 * 119.80871 * 5.86196 * 16 14 13 18 18 C 1.31487 * 121.76956 * 179.97438 * 17 16 14 19 19 C 1.38705 * 121.17447 * 359.97438 * 18 17 16 20 20 C 1.38326 * 119.47908 * 0.02562 * 19 18 17 21 21 C 1.39814 * 118.37316 * 359.74506 * 20 19 18 22 22 C 1.48213 * 120.58988 * 180.27162 * 21 20 19 23 23 C 1.39380 * 119.73650 * 78.50178 * 22 21 20 24 24 C 1.38418 * 119.06769 * 179.73120 * 23 22 21 25 25 C 1.38773 * 118.50477 * 0.53384 * 24 23 22 26 26 C 1.38314 * 119.37494 * 359.72948 * 25 24 23 27 27 N 1.31709 * 120.89702 * 359.97438 * 26 25 24 28 28 C 1.47491 * 108.75963 * 335.89222 * 13 12 11 29 29 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 30 30 H 0.96701 * 114.00727 * 59.29514 * 10 9 7 31 31 H 1.09004 * 111.00832 * 324.03204 * 11 9 7 32 32 H 1.09004 * 111.00727 * 87.88332 * 11 9 7 33 33 H 1.08999 * 110.36741 * 155.84430 * 12 11 9 34 34 H 1.09003 * 110.37073 * 278.06148 * 12 11 9 35 35 H 1.07997 * 119.41114 * 180.02562 * 18 17 16 36 36 H 1.08004 * 120.25865 * 180.02562 * 19 18 17 37 37 H 1.07999 * 120.81118 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.46481 * 359.97438 * 23 22 21 39 39 H 1.07998 * 120.75301 * 180.24338 * 24 23 22 40 40 H 1.07999 * 120.31097 * 179.70911 * 25 24 23 41 41 H 1.08002 * 119.55284 * 179.97438 * 26 25 24 42 42 H 1.08994 * 110.03127 * 241.66579 * 28 13 12 43 43 H 1.08997 * 109.96532 * 120.34480 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4083 -2.5942 1.1496 11 6 2.2321 -3.6995 -0.0630 12 6 1.3482 -4.7899 -0.7183 13 7 0.5271 -4.0667 -1.7062 14 6 -0.0391 -4.6070 -2.8034 15 8 -0.6991 -3.9126 -3.5513 16 6 0.1430 -6.0462 -3.0977 17 7 0.7643 -6.8250 -2.2216 18 6 0.9466 -8.1082 -2.4432 19 6 0.4940 -8.7067 -3.6097 20 6 -0.1606 -7.9413 -4.5579 21 6 -0.3478 -6.5801 -4.2992 22 6 -1.0480 -5.7155 -5.2784 23 6 -2.4394 -5.7442 -5.3551 24 6 -3.0793 -4.9269 -6.2708 25 6 -2.3056 -4.1152 -7.0882 26 6 -0.9284 -4.1412 -6.9623 27 7 -0.3448 -4.9241 -6.0784 28 6 0.4264 -2.6536 -1.2959 29 1 -0.4850 0.8401 0.0004 30 1 -0.2486 -1.8877 1.2154 31 1 3.0943 -3.4674 -0.6883 32 1 2.5462 -3.9999 0.9367 33 1 1.9703 -5.5347 -1.2146 34 1 0.7137 -5.2645 0.0303 35 1 1.4572 -8.7068 -1.7035 36 1 0.6514 -9.7622 -3.7764 37 1 -0.5216 -8.3851 -5.4739 38 1 -3.0103 -6.3920 -4.7066 39 1 -4.1564 -4.9244 -6.3506 40 1 -2.7743 -3.4696 -7.8161 41 1 -0.3234 -3.5110 -7.5973 42 1 -0.6147 -2.3932 -1.1057 43 1 0.8355 -2.0099 -2.0746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880412671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:50 Heat of formation + Delta-G solvation = -14.728315 kcal Electronic energy + Delta-G solvation = -29395.848443 eV Core-core repulsion = 25405.608910 eV Total energy + Delta-G solvation = -3990.239534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99513 -40.71927 -40.16967 -38.84190 -36.17321 -34.44030 -34.23453 -33.39105 -33.11240 -31.73334 -30.71375 -29.60448 -27.44842 -25.67631 -25.33288 -24.35673 -23.84428 -22.82542 -21.48948 -20.95834 -19.17436 -18.54004 -18.36143 -17.68707 -17.33597 -17.09167 -16.82857 -16.66795 -16.54436 -16.25293 -15.78969 -15.08563 -15.05035 -14.77554 -14.70692 -14.60777 -14.42878 -14.16812 -13.99936 -13.79162 -13.50196 -13.43490 -13.20253 -12.89880 -12.60924 -12.52440 -12.33880 -12.26685 -12.09923 -11.41744 -11.21842 -11.01402 -10.82116 -10.72424 -10.50677 -10.44678 -10.32476 -10.09701 -9.72729 -9.53622 -8.29708 -6.45889 -0.45101 0.07609 0.21993 0.44120 1.37706 1.40299 1.51953 1.73370 1.96414 2.35597 2.73892 2.85127 2.96597 3.03392 3.21724 3.68965 3.80786 3.83211 3.92738 4.01816 4.04455 4.09411 4.19526 4.25754 4.27072 4.37348 4.40542 4.50533 4.64540 4.69932 4.81004 4.85100 4.97520 4.97833 5.06819 5.12257 5.16718 5.25412 5.28333 5.34370 5.47000 5.60587 5.71211 5.80899 6.01977 6.54376 6.61801 6.72730 7.05980 7.10284 7.25214 7.32957 8.76979 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003834 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.216779 B = 7300.881463 C = 8922.690215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.235 3.765 10 O -0.586 6.586 11 C -0.117 4.117 12 C 0.125 3.875 13 N -0.599 5.599 14 C 0.557 3.443 15 O -0.567 6.567 16 C 0.081 3.919 17 N -0.471 5.471 18 C 0.097 3.903 19 C -0.123 4.123 20 C -0.062 4.062 21 C -0.053 4.053 22 C 0.171 3.829 23 C -0.166 4.166 24 C -0.074 4.074 25 C -0.175 4.175 26 C 0.085 3.915 27 N -0.501 5.501 28 C 0.125 3.875 29 H 0.271 0.729 30 H 0.376 0.624 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.204 0.796 36 H 0.195 0.805 37 H 0.169 0.831 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.031 0.969 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -19.526 -11.316 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.194 3.806 10 O -0.395 6.395 11 C -0.155 4.155 12 C 0.004 3.996 13 N -0.330 5.330 14 C 0.345 3.655 15 O -0.447 6.447 16 C -0.056 4.056 17 N -0.183 5.183 18 C -0.063 4.063 19 C -0.142 4.142 20 C -0.088 4.088 21 C -0.057 4.057 22 C 0.034 3.966 23 C -0.186 4.186 24 C -0.100 4.100 25 C -0.194 4.194 26 C -0.072 4.072 27 N -0.210 5.210 28 C 0.002 3.998 29 H 0.080 0.920 30 H 0.226 0.774 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.221 0.779 36 H 0.212 0.788 37 H 0.186 0.814 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.185 0.815 42 H 0.050 0.950 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.601 -19.175 -10.805 22.068 hybrid contribution -1.410 1.905 -0.794 2.500 sum -3.011 -17.270 -11.599 21.021 Atomic orbital electron populations 1.69764 1.07181 1.28473 1.50296 1.25842 0.95828 1.02898 0.92952 0.85389 0.79127 0.78778 0.77664 1.18859 1.20936 1.19950 1.21884 0.93962 0.91370 1.52406 0.91491 1.19691 0.86665 0.93597 0.80615 1.86085 1.51668 1.54559 1.47155 1.22836 0.97084 0.94074 1.01478 1.22510 0.92832 0.94228 0.90075 1.48795 1.49676 1.11307 1.23251 1.18224 0.79760 0.87292 0.80188 1.90717 1.42415 1.62631 1.48962 1.20833 0.99328 0.92706 0.92771 1.67803 1.12154 1.07790 1.30532 1.23762 0.95596 0.89330 0.97604 1.22814 0.95197 1.03452 0.92728 1.21978 0.95922 0.89999 1.00920 1.19537 0.98205 0.95209 0.92756 1.19445 0.90972 0.93274 0.92888 1.22134 0.93937 1.01981 1.00541 1.21871 1.01905 0.93172 0.93059 1.22480 0.94733 1.00628 1.01568 1.23047 0.94070 0.95350 0.94765 1.67569 1.42150 1.05830 1.05482 1.22617 0.99227 0.79403 0.98507 0.91998 0.77420 0.90358 0.89063 0.87349 0.91745 0.77901 0.78826 0.81357 0.83939 0.81664 0.81822 0.81545 0.95029 0.95033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.76 10.96 21.45 0.24 -51.53 16 2 C 0.03 1.38 5.27 84.66 0.45 1.83 16 3 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.56 -30.79 8.11 25.60 0.21 -30.58 16 8 H 0.07 3.60 7.77 -2.91 -0.02 3.58 16 9 C 0.23 12.18 0.85 -10.35 -0.01 12.18 16 10 O -0.59 -31.44 13.07 -148.98 -1.95 -33.39 16 11 C -0.12 -4.97 6.22 31.98 0.20 -4.78 16 12 C 0.13 4.94 5.83 86.86 0.51 5.45 16 13 N -0.60 -28.04 3.34 -813.80 -2.72 -30.76 16 14 C 0.56 25.44 7.81 86.84 0.68 26.12 16 15 O -0.57 -28.98 14.25 -3.82 -0.05 -29.03 16 16 C 0.08 2.86 6.73 42.13 0.28 3.14 16 17 N -0.47 -13.68 6.69 -184.19 -1.23 -14.91 16 18 C 0.10 1.71 11.17 84.86 0.95 2.65 16 19 C -0.12 -1.58 10.10 22.40 0.23 -1.35 16 20 C -0.06 -1.16 9.93 22.67 0.23 -0.94 16 21 C -0.05 -1.58 5.52 -19.73 -0.11 -1.69 16 22 C 0.17 5.60 3.84 41.94 0.16 5.76 16 23 C -0.17 -4.58 9.81 22.59 0.22 -4.36 16 24 C -0.07 -1.74 10.17 22.44 0.23 -1.51 16 25 C -0.17 -4.14 10.11 22.42 0.23 -3.91 16 26 C 0.08 2.49 11.18 84.73 0.95 3.44 16 27 N -0.50 -17.78 9.71 -184.89 -1.80 -19.57 16 28 C 0.13 6.76 5.41 86.64 0.47 7.23 16 29 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.38 20.93 7.23 -74.06 -0.54 20.40 16 31 H 0.08 3.23 8.04 -2.38 -0.02 3.21 16 32 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.11 3.75 6.09 -2.39 -0.01 3.74 16 34 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.19 0.55 8.06 -2.91 -0.02 0.53 16 37 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 39 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 41 H 0.17 4.02 8.06 -2.91 -0.02 4.00 16 42 H 0.03 1.86 8.00 -2.39 -0.02 1.85 16 43 H 0.03 1.87 7.81 -2.39 -0.02 1.85 16 Total: -1.00 -78.67 362.88 0.89 -77.78 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: 0.52 Total: 37.20 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 5.86 Total: 18.69 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -5.51 Total: -116.77 kcal Atomic # 8 Polarization: -60.42 SS G_CDS: -2.00 Total: -62.42 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -78.67 0.89 -77.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880412671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.055 kcal (2) G-P(sol) polarization free energy of solvation -78.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds