Wall clock time and date at job start Tue Mar 31 2020 22:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00387 * 2 1 4 4 H 1.48497 * 109.46837 * 275.50366 * 3 2 1 5 5 H 1.48500 * 109.46599 * 35.50530 * 3 2 1 6 6 H 1.48498 * 109.46812 * 155.50250 * 3 2 1 7 7 C 1.37882 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00114 * 353.26299 * 7 2 1 9 9 C 1.50694 * 119.99868 * 173.26149 * 7 2 1 10 10 O 1.42903 * 110.78036 * 327.58960 * 9 7 2 11 11 C 1.55402 * 110.85883 * 90.89043 * 9 7 2 12 12 C 1.54902 * 101.66981 * 153.69894 * 11 9 7 13 13 N 1.47430 * 104.83079 * 323.07419 * 12 11 9 14 14 C 1.34773 * 125.64752 * 204.15734 * 13 12 11 15 15 O 1.21536 * 119.99906 * 179.97438 * 14 13 12 16 16 C 1.48019 * 120.00540 * 359.96983 * 14 13 12 17 17 N 1.32668 * 119.80374 * 354.11911 * 16 14 13 18 18 C 1.31488 * 121.76845 * 179.75246 * 17 16 14 19 19 C 1.38713 * 121.17556 * 0.52837 * 18 17 16 20 20 C 1.38325 * 119.47521 * 359.74150 * 19 18 17 21 21 C 1.39818 * 118.37237 * 0.02562 * 20 19 18 22 22 C 1.48224 * 120.58304 * 180.02562 * 21 20 19 23 23 C 1.39381 * 119.73078 * 289.70166 * 22 21 20 24 24 C 1.38423 * 119.06203 * 179.97438 * 23 22 21 25 25 C 1.38768 * 118.50877 * 359.97438 * 24 23 22 26 26 C 1.38313 * 119.37119 * 0.02562 * 25 24 23 27 27 N 1.31708 * 120.90372 * 359.73837 * 26 25 24 28 28 C 1.47024 * 108.70233 * 24.13458 * 13 12 11 29 29 H 0.97003 * 119.99537 * 0.02562 * 1 2 3 30 30 H 0.96694 * 114.00039 * 293.00406 * 10 9 7 31 31 H 1.09008 * 110.88648 * 35.62430 * 11 9 7 32 32 H 1.09000 * 111.07017 * 271.85150 * 11 9 7 33 33 H 1.09003 * 110.36689 * 204.24539 * 12 11 9 34 34 H 1.08998 * 110.37105 * 81.91724 * 12 11 9 35 35 H 1.07998 * 119.41189 * 180.27215 * 18 17 16 36 36 H 1.07993 * 120.26288 * 179.72023 * 19 18 17 37 37 H 1.07996 * 120.81275 * 179.97438 * 20 19 18 38 38 H 1.07996 * 120.47055 * 0.02562 * 23 22 21 39 39 H 1.07996 * 120.74722 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.31146 * 180.02562 * 25 24 23 41 41 H 1.08000 * 119.54890 * 179.97438 * 26 25 24 42 42 H 1.08995 * 109.88471 * 118.35128 * 28 13 12 43 43 H 1.08999 * 109.87754 * 239.36735 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3805 2.1134 -1.3936 5 1 1.5097 2.6162 0.8132 6 1 3.6001 1.4092 0.5805 7 6 2.0045 -1.1941 0.0005 8 1 1.4701 -2.1261 0.1107 9 6 3.5036 -1.1988 -0.1526 10 8 3.9319 -0.1167 -0.9819 11 6 4.2017 -1.1372 1.2344 12 6 5.5584 -1.8213 0.9330 13 7 5.2345 -2.8979 -0.0207 14 6 5.9589 -4.0173 -0.2173 15 8 5.5950 -4.8411 -1.0334 16 6 7.1977 -4.2435 0.5606 17 7 7.6548 -3.2919 1.3641 18 6 8.7483 -3.4533 2.0763 19 6 9.4816 -4.6288 2.0096 20 6 9.0532 -5.6524 1.1837 21 6 7.8853 -5.4607 0.4392 22 6 7.3815 -6.5252 -0.4609 23 6 8.0768 -6.8278 -1.6304 24 6 7.5943 -7.8247 -2.4607 25 6 6.4316 -8.4873 -2.0936 26 6 5.7925 -8.1355 -0.9185 27 7 6.2754 -7.1861 -0.1439 28 6 3.9902 -2.5483 -0.7215 29 1 -0.4849 0.8401 -0.0004 30 1 3.6533 -0.1942 -1.9046 31 1 3.6375 -1.6992 1.9788 32 1 4.3470 -0.1054 1.5545 33 1 5.9839 -2.2386 1.8457 34 1 6.2501 -1.1100 0.4817 35 1 9.0836 -2.6548 2.7215 36 1 10.3801 -4.7439 2.5976 37 1 9.6077 -6.5766 1.1149 38 1 8.9797 -6.2926 -1.8848 39 1 8.1115 -8.0817 -3.3732 40 1 6.0296 -9.2702 -2.7196 41 1 4.8871 -8.6490 -0.6303 42 1 4.1809 -2.4529 -1.7903 43 1 3.2377 -3.3172 -0.5464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880412673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:54 Heat of formation + Delta-G solvation = 18.418453 kcal Electronic energy + Delta-G solvation = -29317.487667 eV Core-core repulsion = 25328.685485 eV Total energy + Delta-G solvation = -3988.802182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99174 -39.66734 -39.02790 -37.43781 -34.81163 -33.53123 -32.52416 -32.32499 -32.16844 -30.29529 -29.69857 -28.26669 -25.87669 -24.52790 -24.24397 -23.38948 -22.25393 -21.93393 -20.01920 -19.53503 -17.63920 -17.52106 -17.23800 -16.72418 -16.20969 -15.98813 -15.43831 -15.34690 -15.19477 -14.84469 -14.66603 -14.09212 -13.91005 -13.66602 -13.47392 -13.38808 -13.16696 -13.00596 -12.73940 -12.56764 -12.23035 -11.99933 -11.79473 -11.53585 -11.41452 -10.93837 -10.51327 -10.31040 -10.22813 -10.09000 -10.04129 -9.86732 -9.56406 -9.52955 -9.15798 -9.13025 -8.72213 -8.55633 -8.45216 -8.05050 -6.15164 -4.26566 0.45367 0.84948 1.16083 1.34354 2.90123 3.27949 3.47414 3.54898 3.73053 3.75027 3.83938 3.93000 4.21258 4.53899 4.55855 4.61439 4.67373 4.80793 4.82072 5.04488 5.07115 5.11146 5.16047 5.19372 5.27618 5.49738 5.52902 5.66563 5.69762 5.78677 5.91328 5.95481 6.02545 6.10105 6.11911 6.22311 6.38499 6.55976 6.66767 6.69235 6.81318 6.87397 7.15639 7.50405 7.58402 7.97688 8.02660 8.16868 8.48944 8.66776 8.86103 9.46453 10.93867 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003502 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.562141 B = 7993.843359 C = 9283.761993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.075 3.925 3 Si 0.941 3.059 4 H -0.293 1.293 5 H -0.324 1.324 6 H -0.257 1.257 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.220 3.780 10 O -0.560 6.560 11 C -0.126 4.126 12 C 0.108 3.892 13 N -0.587 5.587 14 C 0.572 3.428 15 O -0.530 6.530 16 C 0.117 3.883 17 N -0.448 5.448 18 C 0.100 3.900 19 C -0.155 4.155 20 C -0.064 4.064 21 C -0.041 4.041 22 C 0.192 3.808 23 C -0.158 4.158 24 C -0.073 4.073 25 C -0.176 4.176 26 C 0.112 3.888 27 N -0.453 5.453 28 C 0.093 3.907 29 H 0.266 0.734 30 H 0.367 0.633 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.165 0.835 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.154 0.846 42 H 0.058 0.942 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.429 -12.976 0.890 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.130 4.130 3 Si 0.775 3.225 4 H -0.221 1.221 5 H -0.255 1.255 6 H -0.183 1.183 7 C -0.588 4.588 8 H 0.098 0.902 9 C 0.180 3.820 10 O -0.368 6.368 11 C -0.164 4.164 12 C -0.015 4.015 13 N -0.318 5.318 14 C 0.358 3.642 15 O -0.407 6.407 16 C -0.022 4.022 17 N -0.159 5.159 18 C -0.059 4.059 19 C -0.175 4.175 20 C -0.090 4.090 21 C -0.045 4.045 22 C 0.054 3.946 23 C -0.178 4.178 24 C -0.099 4.099 25 C -0.196 4.196 26 C -0.046 4.046 27 N -0.161 5.161 28 C -0.029 4.029 29 H 0.075 0.925 30 H 0.215 0.785 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.182 0.818 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.171 0.829 42 H 0.077 0.923 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.413 -12.201 1.794 23.848 hybrid contribution 0.914 -0.286 -1.404 1.700 sum 21.327 -12.486 0.390 24.716 Atomic orbital electron populations 1.69984 1.06877 1.27691 1.47888 1.25110 0.94847 1.00497 0.92540 0.85819 0.79150 0.80146 0.77381 1.22085 1.25525 1.18293 1.21188 0.88551 0.95438 1.53603 0.90232 1.20141 0.93924 0.80800 0.87152 1.86264 1.79654 1.47432 1.23400 1.23236 0.93880 1.00975 0.98335 1.22630 0.97692 0.88373 0.92789 1.48389 1.24793 1.18867 1.39765 1.17359 0.82560 0.81313 0.82988 1.90777 1.70048 1.43993 1.35871 1.21389 0.95426 0.89994 0.95348 1.67998 1.12690 1.30353 1.04866 1.23010 0.90174 0.96723 0.95971 1.22259 1.01441 0.94317 0.99466 1.21586 0.94202 0.99434 0.93774 1.19320 0.95013 0.93297 0.96901 1.19147 0.90693 0.92746 0.92016 1.21866 1.01527 0.99208 0.95224 1.21400 0.95556 0.94411 0.98576 1.22133 0.96983 1.01855 0.98595 1.22638 0.98365 0.92845 0.90747 1.67631 1.09459 1.05594 1.33421 1.22959 0.84223 0.99995 0.95762 0.92496 0.78495 0.90005 0.90061 0.89471 0.91731 0.81783 0.83937 0.84083 0.85324 0.84975 0.85005 0.82864 0.92331 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 2 C 0.07 2.10 5.46 -17.82 -0.10 2.01 16 3 Si 0.94 23.20 25.22 -169.99 -4.29 18.92 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.32 -8.21 7.11 56.52 0.40 -7.81 16 6 H -0.26 -6.15 4.91 56.52 0.28 -5.87 16 7 C -0.55 -14.92 8.82 -34.44 -0.30 -15.23 16 8 H 0.08 2.37 7.82 -52.49 -0.41 1.96 16 9 C 0.22 5.01 0.68 -89.81 -0.06 4.94 16 10 O -0.56 -12.28 8.35 -35.23 -0.29 -12.58 16 11 C -0.13 -2.60 5.93 -24.45 -0.14 -2.75 16 12 C 0.11 1.97 5.83 -2.53 -0.01 1.95 16 13 N -0.59 -11.72 3.33 -171.57 -0.57 -12.29 16 14 C 0.57 11.22 7.81 -12.25 -0.10 11.13 16 15 O -0.53 -11.40 13.87 5.33 0.07 -11.33 16 16 C 0.12 1.91 6.73 -82.71 -0.56 1.35 16 17 N -0.45 -6.36 6.69 -9.57 -0.06 -6.42 16 18 C 0.10 1.00 11.17 -17.52 -0.20 0.80 16 19 C -0.15 -1.25 10.10 -39.37 -0.40 -1.65 16 20 C -0.06 -0.62 9.92 -38.96 -0.39 -1.01 16 21 C -0.04 -0.58 5.52 -104.42 -0.58 -1.15 16 22 C 0.19 2.81 4.14 -82.96 -0.34 2.47 16 23 C -0.16 -1.92 9.82 -39.09 -0.38 -2.31 16 24 C -0.07 -0.78 10.17 -39.32 -0.40 -1.18 16 25 C -0.18 -1.91 10.11 -39.36 -0.40 -2.30 16 26 C 0.11 1.48 11.17 -17.58 -0.20 1.28 16 27 N -0.45 -7.27 9.13 -9.79 -0.09 -7.36 16 28 C 0.09 1.99 6.20 -3.06 -0.02 1.98 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.37 7.13 8.93 45.56 0.41 7.53 16 31 H 0.08 1.71 8.04 -51.92 -0.42 1.29 16 32 H 0.08 1.68 6.52 -51.93 -0.34 1.34 16 33 H 0.09 1.47 6.09 -51.93 -0.32 1.15 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.06 1.23 7.97 -51.93 -0.41 0.81 16 43 H 0.08 1.74 7.65 -51.93 -0.40 1.34 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -35.47 355.14 -8.21 -43.68 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.53 Total: 7.61 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -4.57 Total: 0.33 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.05 Total: -51.98 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.22 Total: -23.91 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.29 Total: 18.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.47 -8.21 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880412673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.099 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds