Wall clock time and date at job start Tue Mar 31 2020 22:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00387 * 2 1 4 4 H 1.48497 * 109.46837 * 275.50366 * 3 2 1 5 5 H 1.48500 * 109.46599 * 35.50530 * 3 2 1 6 6 H 1.48498 * 109.46812 * 155.50250 * 3 2 1 7 7 C 1.37882 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00114 * 353.26299 * 7 2 1 9 9 C 1.50694 * 119.99868 * 173.26149 * 7 2 1 10 10 O 1.42903 * 110.78036 * 327.58960 * 9 7 2 11 11 C 1.55402 * 110.85883 * 90.89043 * 9 7 2 12 12 C 1.54902 * 101.66981 * 153.69894 * 11 9 7 13 13 N 1.47430 * 104.83079 * 323.07419 * 12 11 9 14 14 C 1.34773 * 125.64752 * 204.15734 * 13 12 11 15 15 O 1.21536 * 119.99906 * 179.97438 * 14 13 12 16 16 C 1.48019 * 120.00540 * 359.96983 * 14 13 12 17 17 N 1.32668 * 119.80374 * 354.11911 * 16 14 13 18 18 C 1.31488 * 121.76845 * 179.75246 * 17 16 14 19 19 C 1.38713 * 121.17556 * 0.52837 * 18 17 16 20 20 C 1.38325 * 119.47521 * 359.74150 * 19 18 17 21 21 C 1.39818 * 118.37237 * 0.02562 * 20 19 18 22 22 C 1.48224 * 120.58304 * 180.02562 * 21 20 19 23 23 C 1.39381 * 119.73078 * 289.70166 * 22 21 20 24 24 C 1.38423 * 119.06203 * 179.97438 * 23 22 21 25 25 C 1.38768 * 118.50877 * 359.97438 * 24 23 22 26 26 C 1.38313 * 119.37119 * 0.02562 * 25 24 23 27 27 N 1.31708 * 120.90372 * 359.73837 * 26 25 24 28 28 C 1.47024 * 108.70233 * 24.13458 * 13 12 11 29 29 H 0.97003 * 119.99537 * 0.02562 * 1 2 3 30 30 H 0.96694 * 114.00039 * 293.00406 * 10 9 7 31 31 H 1.09008 * 110.88648 * 35.62430 * 11 9 7 32 32 H 1.09000 * 111.07017 * 271.85150 * 11 9 7 33 33 H 1.09003 * 110.36689 * 204.24539 * 12 11 9 34 34 H 1.08998 * 110.37105 * 81.91724 * 12 11 9 35 35 H 1.07998 * 119.41189 * 180.27215 * 18 17 16 36 36 H 1.07993 * 120.26288 * 179.72023 * 19 18 17 37 37 H 1.07996 * 120.81275 * 179.97438 * 20 19 18 38 38 H 1.07996 * 120.47055 * 0.02562 * 23 22 21 39 39 H 1.07996 * 120.74722 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.31146 * 180.02562 * 25 24 23 41 41 H 1.08000 * 119.54890 * 179.97438 * 26 25 24 42 42 H 1.08995 * 109.88471 * 118.35128 * 28 13 12 43 43 H 1.08999 * 109.87754 * 239.36735 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3805 2.1134 -1.3936 5 1 1.5097 2.6162 0.8132 6 1 3.6001 1.4092 0.5805 7 6 2.0045 -1.1941 0.0005 8 1 1.4701 -2.1261 0.1107 9 6 3.5036 -1.1988 -0.1526 10 8 3.9319 -0.1167 -0.9819 11 6 4.2017 -1.1372 1.2344 12 6 5.5584 -1.8213 0.9330 13 7 5.2345 -2.8979 -0.0207 14 6 5.9589 -4.0173 -0.2173 15 8 5.5950 -4.8411 -1.0334 16 6 7.1977 -4.2435 0.5606 17 7 7.6548 -3.2919 1.3641 18 6 8.7483 -3.4533 2.0763 19 6 9.4816 -4.6288 2.0096 20 6 9.0532 -5.6524 1.1837 21 6 7.8853 -5.4607 0.4392 22 6 7.3815 -6.5252 -0.4609 23 6 8.0768 -6.8278 -1.6304 24 6 7.5943 -7.8247 -2.4607 25 6 6.4316 -8.4873 -2.0936 26 6 5.7925 -8.1355 -0.9185 27 7 6.2754 -7.1861 -0.1439 28 6 3.9902 -2.5483 -0.7215 29 1 -0.4849 0.8401 -0.0004 30 1 3.6533 -0.1942 -1.9046 31 1 3.6375 -1.6992 1.9788 32 1 4.3470 -0.1054 1.5545 33 1 5.9839 -2.2386 1.8457 34 1 6.2501 -1.1100 0.4817 35 1 9.0836 -2.6548 2.7215 36 1 10.3801 -4.7439 2.5976 37 1 9.6077 -6.5766 1.1149 38 1 8.9797 -6.2926 -1.8848 39 1 8.1115 -8.0817 -3.3732 40 1 6.0296 -9.2702 -2.7196 41 1 4.8871 -8.6490 -0.6303 42 1 4.1809 -2.4529 -1.7903 43 1 3.2377 -3.3172 -0.5464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880412673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:54 Heat of formation + Delta-G solvation = -7.830709 kcal Electronic energy + Delta-G solvation = -29318.625916 eV Core-core repulsion = 25328.685485 eV Total energy + Delta-G solvation = -3989.940431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.02748 -40.80071 -40.25003 -39.03766 -36.44734 -34.48998 -34.44593 -33.42180 -33.10712 -31.82306 -30.72165 -29.97949 -27.56926 -25.63541 -25.33530 -24.33607 -23.73680 -22.84113 -21.60775 -21.05863 -19.57789 -18.61856 -18.36387 -17.69826 -17.25853 -17.01395 -16.93103 -16.73709 -16.65589 -16.52072 -15.88313 -15.33984 -15.04465 -15.00307 -14.65832 -14.53157 -14.41552 -14.18505 -14.02118 -13.97467 -13.87344 -13.40846 -13.23974 -13.10905 -12.73246 -12.58145 -12.33370 -12.25060 -11.88292 -11.43154 -11.20685 -11.02959 -10.82341 -10.66543 -10.52904 -10.45195 -10.33814 -10.09994 -9.74329 -9.56664 -8.35557 -6.50452 -0.48451 0.03479 0.27733 0.47583 1.49761 1.53967 1.70203 1.77640 1.89268 2.46635 2.73195 2.88739 2.95210 3.02024 3.19556 3.47357 3.69124 3.80199 3.87698 3.93545 4.00618 4.06012 4.07982 4.26859 4.27434 4.31912 4.38566 4.39685 4.47953 4.70327 4.72080 4.79108 4.83386 4.95375 5.05559 5.06484 5.17177 5.19407 5.22872 5.26590 5.40669 5.50020 5.60479 5.81924 6.03159 6.46331 6.54974 6.69236 6.90762 7.05608 7.10133 7.27805 8.77914 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003502 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.562141 B = 7993.843359 C = 9283.761993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.025 3.975 3 Si 1.005 2.995 4 H -0.285 1.285 5 H -0.332 1.332 6 H -0.240 1.240 7 C -0.552 4.552 8 H 0.035 0.965 9 C 0.224 3.776 10 O -0.556 6.556 11 C -0.124 4.124 12 C 0.125 3.875 13 N -0.597 5.597 14 C 0.564 3.436 15 O -0.560 6.560 16 C 0.080 3.920 17 N -0.471 5.471 18 C 0.096 3.904 19 C -0.123 4.123 20 C -0.063 4.063 21 C -0.052 4.052 22 C 0.166 3.834 23 C -0.165 4.165 24 C -0.074 4.074 25 C -0.173 4.173 26 C 0.084 3.916 27 N -0.497 5.497 28 C 0.103 3.897 29 H 0.268 0.732 30 H 0.379 0.621 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.202 0.798 36 H 0.193 0.807 37 H 0.170 0.830 38 H 0.149 0.851 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.060 0.940 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.149 -12.810 1.418 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.174 4.174 3 Si 0.837 3.163 4 H -0.211 1.211 5 H -0.264 1.264 6 H -0.165 1.165 7 C -0.590 4.590 8 H 0.053 0.947 9 C 0.183 3.817 10 O -0.365 6.365 11 C -0.163 4.163 12 C 0.003 3.997 13 N -0.328 5.328 14 C 0.353 3.647 15 O -0.439 6.439 16 C -0.057 4.057 17 N -0.183 5.183 18 C -0.064 4.064 19 C -0.143 4.143 20 C -0.089 4.089 21 C -0.056 4.056 22 C 0.029 3.971 23 C -0.185 4.185 24 C -0.100 4.100 25 C -0.192 4.192 26 C -0.073 4.073 27 N -0.206 5.206 28 C -0.021 4.021 29 H 0.077 0.923 30 H 0.228 0.772 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.219 0.781 36 H 0.210 0.790 37 H 0.187 0.813 38 H 0.167 0.833 39 H 0.186 0.814 40 H 0.181 0.819 41 H 0.179 0.821 42 H 0.078 0.922 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 25.154 -12.059 2.312 27.991 hybrid contribution -0.498 -0.501 -1.549 1.702 sum 24.656 -12.559 0.763 27.681 Atomic orbital electron populations 1.70106 1.08720 1.28656 1.50090 1.25936 0.95371 1.03960 0.92165 0.84782 0.78263 0.75572 0.77690 1.21127 1.26374 1.16510 1.21373 0.91122 0.93671 1.52810 0.94716 1.19916 0.91409 0.81664 0.88717 1.86207 1.79235 1.46783 1.24280 1.23161 0.95013 1.01627 0.96450 1.22566 0.96040 0.87829 0.93270 1.48444 1.24244 1.19879 1.40226 1.18080 0.83526 0.80283 0.82811 1.90734 1.71229 1.44692 1.37265 1.20824 0.95163 0.92024 0.97730 1.67812 1.14688 1.30323 1.05444 1.23727 0.88869 0.98562 0.95199 1.22805 1.01722 0.92311 0.97437 1.21994 0.92823 1.01137 0.92929 1.19548 0.96228 0.92296 0.97566 1.19482 0.90923 0.93303 0.93401 1.22180 1.02106 0.99623 0.94597 1.21884 0.95330 0.93429 0.99339 1.22479 0.96795 1.02157 0.97811 1.22992 0.99259 0.93114 0.91948 1.67557 1.10778 1.07020 1.35222 1.22583 0.84869 0.98497 0.96117 0.92308 0.77192 0.90989 0.89327 0.87680 0.90806 0.78149 0.79024 0.81255 0.83331 0.81442 0.81938 0.82084 0.92162 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.35 13.96 21.45 0.30 -58.05 16 2 C 0.03 1.46 5.46 84.66 0.46 1.92 16 3 Si 1.01 47.83 25.22 68.60 1.73 49.56 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.33 -16.17 7.11 99.48 0.71 -15.47 16 6 H -0.24 -10.69 4.91 99.48 0.49 -10.20 16 7 C -0.55 -31.23 8.82 25.60 0.23 -31.00 16 8 H 0.03 2.22 7.82 -2.91 -0.02 2.20 16 9 C 0.22 10.31 0.68 -10.27 -0.01 10.30 16 10 O -0.56 -23.72 8.35 -148.98 -1.24 -24.96 16 11 C -0.12 -5.09 5.93 32.07 0.19 -4.90 16 12 C 0.12 4.44 5.83 86.85 0.51 4.95 16 13 N -0.60 -24.29 3.33 -815.00 -2.71 -27.00 16 14 C 0.56 22.79 7.81 86.84 0.68 23.47 16 15 O -0.56 -25.28 13.87 -3.83 -0.05 -25.34 16 16 C 0.08 2.55 6.73 42.12 0.28 2.83 16 17 N -0.47 -12.39 6.69 -184.19 -1.23 -13.62 16 18 C 0.10 1.51 11.17 84.86 0.95 2.46 16 19 C -0.12 -1.36 10.10 22.40 0.23 -1.14 16 20 C -0.06 -1.02 9.92 22.67 0.22 -0.79 16 21 C -0.05 -1.40 5.52 -19.73 -0.11 -1.51 16 22 C 0.17 4.86 4.14 41.94 0.17 5.04 16 23 C -0.17 -3.82 9.82 22.59 0.22 -3.60 16 24 C -0.07 -1.44 10.17 22.44 0.23 -1.21 16 25 C -0.17 -3.59 10.11 22.41 0.23 -3.36 16 26 C 0.08 2.30 11.17 84.73 0.95 3.25 16 27 N -0.50 -16.51 9.13 -184.89 -1.69 -18.20 16 28 C 0.10 4.61 6.20 86.73 0.54 5.15 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.38 14.31 8.93 -74.06 -0.66 13.64 16 31 H 0.07 3.06 8.04 -2.38 -0.02 3.04 16 32 H 0.09 3.50 6.52 -2.39 -0.02 3.48 16 33 H 0.11 3.40 6.09 -2.39 -0.01 3.38 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 37 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 41 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 42 H 0.06 2.63 7.97 -2.39 -0.02 2.61 16 43 H 0.04 2.22 7.65 -2.39 -0.02 2.20 16 Total: -1.00 -83.18 355.14 1.24 -81.94 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.18 Total: 23.81 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 5.96 Total: 11.86 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -5.33 Total: -116.87 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -1.30 Total: -50.30 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.73 Total: 49.56 kcal Total: -83.18 1.24 -81.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880412673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.112 kcal (2) G-P(sol) polarization free energy of solvation -83.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds