Wall clock time and date at job start Tue Mar 31 2020 22:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86801 * 120.00094 * 2 1 4 4 H 1.48500 * 109.46759 * 85.01238 * 3 2 1 5 5 H 1.48500 * 109.47058 * 205.00920 * 3 2 1 6 6 H 1.48498 * 109.47274 * 325.01193 * 3 2 1 7 7 C 1.40028 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99879 * 187.23252 * 7 2 1 9 9 C 1.41337 * 120.00079 * 7.23580 * 7 2 1 10 10 C 1.40614 * 119.78424 * 187.19810 * 9 7 2 11 11 C 1.38314 * 119.12950 * 179.97438 * 10 9 7 12 12 C 1.38684 * 118.67394 * 0.02562 * 11 10 9 13 13 C 1.39659 * 119.49162 * 359.97438 * 12 11 10 14 14 N 1.39184 * 119.57565 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99671 * 18.97096 * 14 13 12 16 16 O 1.21584 * 120.00181 * 5.60153 * 15 14 13 17 17 C 1.47483 * 119.99933 * 185.60428 * 15 14 13 18 18 C 1.39766 * 120.76870 * 359.72059 * 17 15 14 19 19 C 1.38881 * 118.87338 * 179.82295 * 18 17 15 20 20 C 1.37862 * 119.43687 * 0.27444 * 19 18 17 21 21 N 1.32751 * 120.42539 * 359.97438 * 20 19 18 22 22 C 1.31857 * 122.58876 * 359.90700 * 21 20 19 23 23 O 1.35421 * 119.89232 * 179.88988 * 22 21 20 24 24 C 1.50793 * 122.25458 * 180.24625 * 20 19 18 25 25 C 1.52690 * 110.59755 * 342.04391 * 24 20 19 26 26 C 1.53324 * 108.42894 * 51.39742 * 25 24 20 27 27 C 1.50548 * 117.76184 * 179.86789 * 19 18 17 28 28 N 1.31942 * 120.84807 * 359.74392 * 13 12 11 29 29 H 0.97005 * 119.99812 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.43721 * 359.95004 * 10 9 7 31 31 H 1.08004 * 120.66157 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.25329 * 179.97438 * 12 11 10 33 33 H 0.96994 * 119.99887 * 198.96702 * 14 13 12 34 34 H 1.08000 * 120.56228 * 0.05980 * 18 17 15 35 35 H 0.96706 * 113.99491 * 270.01845 * 23 22 21 36 36 H 1.09003 * 109.25004 * 102.33241 * 24 20 19 37 37 H 1.09003 * 109.25078 * 221.79248 * 24 20 19 38 38 H 1.09003 * 109.67776 * 171.13670 * 25 24 20 39 39 H 1.09003 * 109.67506 * 291.66048 * 25 24 20 40 40 H 1.08997 * 109.68637 * 49.75564 * 26 25 24 41 41 H 1.08994 * 109.69415 * 170.33147 * 26 25 24 42 42 H 1.08996 * 109.25422 * 42.57839 * 27 19 18 43 43 H 1.08999 * 109.25094 * 283.14577 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3835 2.1072 1.3948 5 1 3.5878 1.4120 -0.5919 6 1 1.4957 2.6200 -0.8028 7 6 2.0075 -1.2127 -0.0005 8 1 3.0812 -1.2165 0.1172 9 6 1.3093 -2.4318 -0.1553 10 6 1.9919 -3.6518 -0.0040 11 6 1.2952 -4.8367 -0.1579 12 6 -0.0577 -4.7791 -0.4576 13 6 -0.6791 -3.5359 -0.5953 14 7 -2.0368 -3.4761 -0.8955 15 6 -2.8224 -4.5498 -0.6804 16 8 -2.3687 -5.5348 -0.1306 17 6 -4.2326 -4.5301 -1.1120 18 6 -4.7723 -3.4044 -1.7403 19 6 -6.1040 -3.4299 -2.1338 20 6 -6.8605 -4.5568 -1.8920 21 7 -6.3234 -5.6103 -1.2887 22 6 -5.0647 -5.6393 -0.8972 23 8 -4.5737 -6.7427 -0.2844 24 6 -8.3097 -4.6553 -2.2968 25 6 -8.8887 -3.2677 -2.5628 26 6 -7.9599 -2.5336 -3.5371 27 6 -6.6604 -2.2028 -2.8055 28 7 0.0032 -2.4175 -0.4389 29 1 -0.4850 0.8401 0.0004 30 1 3.0464 -3.6635 0.2287 31 1 1.7947 -5.7878 -0.0467 32 1 -0.6263 -5.6886 -0.5836 33 1 -2.4175 -2.6616 -1.2595 34 1 -4.1632 -2.5309 -1.9202 35 1 -4.6679 -6.7327 0.6780 36 1 -8.3899 -5.2577 -3.2017 37 1 -8.8749 -5.1325 -1.4962 38 1 -9.8814 -3.3624 -3.0030 39 1 -8.9531 -2.7114 -1.6276 40 1 -7.7466 -3.1732 -4.3935 41 1 -8.4356 -1.6130 -3.8751 42 1 -5.9314 -1.8232 -3.5214 43 1 -6.8560 -1.4388 -2.0531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:54 Heat of formation + Delta-G solvation = -4.578033 kcal Electronic energy + Delta-G solvation = -28384.595969 eV Core-core repulsion = 24394.796585 eV Total energy + Delta-G solvation = -3989.799384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18973 -39.62907 -38.15421 -37.45245 -35.78721 -34.38544 -33.74431 -33.14651 -30.68513 -30.42968 -29.76309 -28.97610 -25.65491 -24.81244 -23.88551 -22.93167 -22.12882 -21.63164 -20.60684 -19.63693 -18.56322 -17.67818 -17.58158 -16.93560 -16.13301 -15.98687 -15.24235 -14.93471 -14.85085 -14.55489 -14.39703 -14.34071 -14.20395 -13.69722 -13.64994 -13.29744 -13.16874 -12.89541 -12.77057 -12.38858 -11.97906 -11.82068 -11.71924 -11.32064 -11.27275 -11.20034 -11.07693 -11.04578 -10.86702 -10.68757 -10.20311 -9.91374 -9.86963 -9.70817 -9.24337 -8.98147 -8.77517 -8.10359 -7.72274 -7.14599 -6.51678 -4.53386 0.47656 0.93582 2.52935 2.85952 3.05953 3.09655 3.12695 3.21346 3.29484 3.53742 3.76647 3.91675 4.22594 4.28345 4.51328 4.53416 4.56378 4.73353 4.79060 4.89770 5.11583 5.19124 5.26685 5.35560 5.36175 5.52571 5.59081 5.64751 5.71113 5.80011 5.86617 5.95202 6.01515 6.13736 6.28072 6.35417 6.72503 6.75934 6.81054 7.09633 7.41826 7.44568 7.50119 7.73545 7.81119 7.85534 8.07457 8.24369 8.56762 8.67077 8.91564 9.97975 10.26246 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.003031 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.042073 B = 9235.352800 C =11147.774630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.437 4.437 8 H 0.086 0.914 9 C 0.281 3.719 10 C -0.286 4.286 11 C -0.049 4.049 12 C -0.310 4.310 13 C 0.357 3.643 14 N -0.640 5.640 15 C 0.560 3.440 16 O -0.498 6.498 17 C -0.196 4.196 18 C -0.029 4.029 19 C -0.146 4.146 20 C 0.178 3.822 21 N -0.514 5.514 22 C 0.373 3.627 23 O -0.459 6.459 24 C -0.071 4.071 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.076 4.076 28 N -0.509 5.509 29 H 0.272 0.728 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.404 0.596 34 H 0.146 0.854 35 H 0.405 0.595 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.662 -1.312 -5.277 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.151 4.151 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.185 1.185 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.104 0.896 9 C 0.155 3.845 10 C -0.309 4.309 11 C -0.074 4.074 12 C -0.335 4.335 13 C 0.122 3.878 14 N -0.285 5.285 15 C 0.346 3.654 16 O -0.373 6.373 17 C -0.203 4.203 18 C -0.055 4.055 19 C -0.148 4.148 20 C 0.042 3.958 21 N -0.233 5.233 22 C 0.191 3.809 23 O -0.266 6.266 24 C -0.109 4.109 25 C -0.158 4.158 26 C -0.159 4.159 27 C -0.114 4.114 28 N -0.228 5.228 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.149 0.851 33 H 0.240 0.760 34 H 0.163 0.837 35 H 0.264 0.736 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.266 -2.034 -5.341 19.140 hybrid contribution 1.193 1.164 0.341 1.701 sum -17.073 -0.870 -5.000 17.811 Atomic orbital electron populations 1.70063 1.07331 1.27707 1.29700 1.26017 0.94835 1.01034 0.93173 0.86327 0.80685 0.80883 0.78987 1.19573 1.18457 1.20114 1.19550 0.94853 0.89403 1.43044 0.89615 1.18163 0.86395 0.92124 0.87865 1.21736 0.99801 0.93454 1.15923 1.20825 0.93658 0.96748 0.96120 1.21609 0.95678 0.97380 1.18818 1.18402 0.83088 0.91165 0.95098 1.43038 1.07774 1.15418 1.62244 1.17671 0.84561 0.83386 0.79806 1.90733 1.73434 1.32762 1.40351 1.21127 0.96230 0.95719 1.07247 1.21853 0.94605 0.96930 0.92072 1.20394 0.93923 0.97759 1.02720 1.20998 0.96047 0.87318 0.91474 1.67104 1.13304 1.28678 1.14218 1.18938 0.86109 0.84432 0.91429 1.84722 1.79767 1.36952 1.25191 1.20454 0.89313 0.98421 1.02663 1.21589 0.98922 0.95090 1.00193 1.21587 0.95153 1.00942 0.98262 1.20431 0.97543 0.94073 0.99328 1.67967 1.08844 1.25003 1.20980 0.91748 0.88128 0.88200 0.85055 0.76017 0.83683 0.73566 0.89412 0.89372 0.90682 0.91233 0.91345 0.90881 0.90070 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.59 11.56 55.55 0.64 -17.95 16 2 C 0.07 1.84 5.47 -17.34 -0.09 1.74 16 3 Si 0.91 18.18 29.57 -169.99 -5.03 13.15 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.44 -11.54 9.13 -37.73 -0.34 -11.88 16 8 H 0.09 2.12 7.86 -52.48 -0.41 1.71 16 9 C 0.28 7.70 6.52 -85.00 -0.55 7.14 16 10 C -0.29 -7.19 9.83 -38.66 -0.38 -7.57 16 11 C -0.05 -1.16 10.15 -39.39 -0.40 -1.56 16 12 C -0.31 -7.64 8.83 -38.89 -0.34 -7.98 16 13 C 0.36 8.85 7.51 -155.03 -1.16 7.69 16 14 N -0.64 -13.03 5.36 -12.37 -0.07 -13.09 16 15 C 0.56 10.71 7.61 -12.49 -0.10 10.62 16 16 O -0.50 -10.79 12.02 -16.35 -0.20 -10.98 16 17 C -0.20 -3.04 5.90 -104.78 -0.62 -3.66 16 18 C -0.03 -0.36 9.21 -38.77 -0.36 -0.71 16 19 C -0.15 -1.57 5.74 -104.60 -0.60 -2.17 16 20 C 0.18 2.03 6.63 -82.29 -0.55 1.49 16 21 N -0.51 -7.19 10.18 -9.20 -0.09 -7.29 16 22 C 0.37 5.71 7.78 -16.76 -0.13 5.58 16 23 O -0.46 -7.02 11.69 -39.59 -0.46 -7.48 16 24 C -0.07 -0.57 5.90 -28.00 -0.17 -0.73 16 25 C -0.12 -0.72 5.97 -26.72 -0.16 -0.88 16 26 C -0.12 -0.75 5.98 -26.69 -0.16 -0.91 16 27 C -0.08 -0.58 5.67 -28.08 -0.16 -0.74 16 28 N -0.51 -13.80 7.99 -10.27 -0.08 -13.88 16 29 H 0.27 6.26 8.29 -40.82 -0.34 5.92 16 30 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 31 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 32 H 0.13 3.21 5.34 -52.50 -0.28 2.93 16 33 H 0.40 7.25 6.95 -40.82 -0.28 6.96 16 34 H 0.15 1.58 6.52 -52.49 -0.34 1.24 16 35 H 0.40 4.52 9.06 45.56 0.41 4.93 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 40 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -33.10 358.69 -10.41 -43.51 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -4.26 Total: 13.14 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -6.27 Total: -4.53 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.40 Total: -52.21 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.66 Total: -18.46 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.10 -10.41 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.935 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds