Wall clock time and date at job start Tue Mar 31 2020 22:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86801 * 120.00094 * 2 1 4 4 H 1.48500 * 109.46759 * 85.01238 * 3 2 1 5 5 H 1.48500 * 109.47058 * 205.00920 * 3 2 1 6 6 H 1.48498 * 109.47274 * 325.01193 * 3 2 1 7 7 C 1.40028 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99879 * 187.23252 * 7 2 1 9 9 C 1.41337 * 120.00079 * 7.23580 * 7 2 1 10 10 C 1.40614 * 119.78424 * 187.19810 * 9 7 2 11 11 C 1.38314 * 119.12950 * 179.97438 * 10 9 7 12 12 C 1.38684 * 118.67394 * 0.02562 * 11 10 9 13 13 C 1.39659 * 119.49162 * 359.97438 * 12 11 10 14 14 N 1.39184 * 119.57565 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99671 * 18.97096 * 14 13 12 16 16 O 1.21584 * 120.00181 * 5.60153 * 15 14 13 17 17 C 1.47483 * 119.99933 * 185.60428 * 15 14 13 18 18 C 1.39766 * 120.76870 * 359.72059 * 17 15 14 19 19 C 1.38881 * 118.87338 * 179.82295 * 18 17 15 20 20 C 1.37862 * 119.43687 * 0.27444 * 19 18 17 21 21 N 1.32751 * 120.42539 * 359.97438 * 20 19 18 22 22 C 1.31857 * 122.58876 * 359.90700 * 21 20 19 23 23 O 1.35421 * 119.89232 * 179.88988 * 22 21 20 24 24 C 1.50793 * 122.25458 * 180.24625 * 20 19 18 25 25 C 1.52690 * 110.59755 * 342.04391 * 24 20 19 26 26 C 1.53324 * 108.42894 * 51.39742 * 25 24 20 27 27 C 1.50548 * 117.76184 * 179.86789 * 19 18 17 28 28 N 1.31942 * 120.84807 * 359.74392 * 13 12 11 29 29 H 0.97005 * 119.99812 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.43721 * 359.95004 * 10 9 7 31 31 H 1.08004 * 120.66157 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.25329 * 179.97438 * 12 11 10 33 33 H 0.96994 * 119.99887 * 198.96702 * 14 13 12 34 34 H 1.08000 * 120.56228 * 0.05980 * 18 17 15 35 35 H 0.96706 * 113.99491 * 270.01845 * 23 22 21 36 36 H 1.09003 * 109.25004 * 102.33241 * 24 20 19 37 37 H 1.09003 * 109.25078 * 221.79248 * 24 20 19 38 38 H 1.09003 * 109.67776 * 171.13670 * 25 24 20 39 39 H 1.09003 * 109.67506 * 291.66048 * 25 24 20 40 40 H 1.08997 * 109.68637 * 49.75564 * 26 25 24 41 41 H 1.08994 * 109.69415 * 170.33147 * 26 25 24 42 42 H 1.08996 * 109.25422 * 42.57839 * 27 19 18 43 43 H 1.08999 * 109.25094 * 283.14577 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3835 2.1072 1.3948 5 1 3.5878 1.4120 -0.5919 6 1 1.4957 2.6200 -0.8028 7 6 2.0075 -1.2127 -0.0005 8 1 3.0812 -1.2165 0.1172 9 6 1.3093 -2.4318 -0.1553 10 6 1.9919 -3.6518 -0.0040 11 6 1.2952 -4.8367 -0.1579 12 6 -0.0577 -4.7791 -0.4576 13 6 -0.6791 -3.5359 -0.5953 14 7 -2.0368 -3.4761 -0.8955 15 6 -2.8224 -4.5498 -0.6804 16 8 -2.3687 -5.5348 -0.1306 17 6 -4.2326 -4.5301 -1.1120 18 6 -4.7723 -3.4044 -1.7403 19 6 -6.1040 -3.4299 -2.1338 20 6 -6.8605 -4.5568 -1.8920 21 7 -6.3234 -5.6103 -1.2887 22 6 -5.0647 -5.6393 -0.8972 23 8 -4.5737 -6.7427 -0.2844 24 6 -8.3097 -4.6553 -2.2968 25 6 -8.8887 -3.2677 -2.5628 26 6 -7.9599 -2.5336 -3.5371 27 6 -6.6604 -2.2028 -2.8055 28 7 0.0032 -2.4175 -0.4389 29 1 -0.4850 0.8401 0.0004 30 1 3.0464 -3.6635 0.2287 31 1 1.7947 -5.7878 -0.0467 32 1 -0.6263 -5.6886 -0.5836 33 1 -2.4175 -2.6616 -1.2595 34 1 -4.1632 -2.5309 -1.9202 35 1 -4.6679 -6.7327 0.6780 36 1 -8.3899 -5.2577 -3.2017 37 1 -8.8749 -5.1325 -1.4962 38 1 -9.8814 -3.3624 -3.0030 39 1 -8.9531 -2.7114 -1.6276 40 1 -7.7466 -3.1732 -4.3935 41 1 -8.4356 -1.6130 -3.8751 42 1 -5.9314 -1.8232 -3.5214 43 1 -6.8560 -1.4388 -2.0531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:53 Heat of formation + Delta-G solvation = -26.522597 kcal Electronic energy + Delta-G solvation = -28385.547557 eV Core-core repulsion = 24394.796585 eV Total energy + Delta-G solvation = -3990.750972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.31867 -41.12684 -39.58705 -38.81700 -36.65279 -36.06707 -35.27069 -34.47498 -32.38120 -31.80048 -30.67368 -30.48377 -27.50810 -25.88760 -24.91330 -23.90009 -23.60360 -23.30449 -21.89759 -20.82296 -19.74113 -19.34899 -19.03859 -18.14716 -17.57371 -17.17798 -16.67489 -16.53815 -16.21302 -16.05338 -15.73555 -15.37481 -15.21747 -14.80269 -14.74832 -14.55361 -14.29585 -14.21972 -13.92497 -13.77232 -13.58486 -12.96593 -12.91729 -12.81298 -12.68958 -12.57633 -12.54147 -11.89430 -11.81354 -11.69275 -11.65967 -11.58706 -11.08773 -10.92842 -10.85605 -10.44739 -10.04406 -9.75869 -9.67243 -9.03113 -8.38434 -6.51799 -0.63574 -0.06988 0.76256 1.06919 1.43257 1.51844 1.57822 1.74888 1.84961 2.24160 2.34006 2.59409 2.85377 3.24615 3.46247 3.52287 3.70429 3.87240 3.90636 4.05792 4.07291 4.29549 4.34129 4.42358 4.54748 4.59972 4.63557 4.68185 4.79559 4.85048 4.88482 4.92387 4.98826 5.05699 5.16019 5.22434 5.25210 5.28846 5.47985 5.49445 5.57979 5.60015 5.90034 6.02179 6.21459 6.39819 6.48334 6.72191 6.74381 6.88394 7.07343 8.03611 8.42712 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.003031 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.042073 B = 9235.352800 C =11147.774630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.029 3.971 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.093 0.907 9 C 0.247 3.753 10 C -0.305 4.305 11 C -0.047 4.047 12 C -0.327 4.327 13 C 0.349 3.651 14 N -0.637 5.637 15 C 0.562 3.438 16 O -0.528 6.528 17 C -0.217 4.217 18 C -0.026 4.026 19 C -0.138 4.138 20 C 0.178 3.822 21 N -0.528 5.528 22 C 0.362 3.638 23 O -0.476 6.476 24 C -0.071 4.071 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.078 4.078 28 N -0.533 5.533 29 H 0.282 0.718 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.413 0.587 34 H 0.159 0.841 35 H 0.417 0.583 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.417 0.553 -6.318 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.193 4.193 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.111 0.889 9 C 0.120 3.880 10 C -0.328 4.328 11 C -0.072 4.072 12 C -0.352 4.352 13 C 0.114 3.886 14 N -0.283 5.283 15 C 0.351 3.649 16 O -0.406 6.406 17 C -0.224 4.224 18 C -0.051 4.051 19 C -0.140 4.140 20 C 0.042 3.958 21 N -0.247 5.247 22 C 0.180 3.820 23 O -0.286 6.286 24 C -0.109 4.109 25 C -0.153 4.153 26 C -0.158 4.158 27 C -0.115 4.115 28 N -0.253 5.253 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.251 0.749 34 H 0.176 0.824 35 H 0.278 0.722 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.054 -0.183 -6.385 21.047 hybrid contribution 1.582 0.533 0.644 1.789 sum -18.472 0.350 -5.741 19.347 Atomic orbital electron populations 1.70128 1.08905 1.29377 1.29324 1.26944 0.95740 1.04421 0.92179 0.85101 0.79112 0.75673 0.79221 1.18910 1.18086 1.19018 1.19937 0.95458 0.90286 1.43991 0.88941 1.18689 0.87144 0.93489 0.88632 1.21918 1.00645 0.93344 1.16844 1.21174 0.93457 0.97796 0.94754 1.21793 0.96301 0.97435 1.19628 1.18734 0.84667 0.90919 0.94308 1.43009 1.06415 1.16430 1.62419 1.18209 0.85727 0.82312 0.78669 1.90691 1.74450 1.33663 1.41750 1.20822 0.94077 0.97489 1.10052 1.22068 0.95646 0.96233 0.91203 1.20773 0.92931 0.98762 1.01532 1.21762 0.97671 0.86658 0.89689 1.67208 1.12532 1.29902 1.15100 1.19042 0.86698 0.84335 0.91920 1.84665 1.80141 1.37365 1.26418 1.20628 0.86892 1.00298 1.03068 1.21609 0.99809 0.93434 1.00442 1.21617 0.94240 1.01944 0.97952 1.20577 0.98625 0.92577 0.99753 1.68001 1.09155 1.25868 1.22256 0.90779 0.86665 0.85118 0.85115 0.74890 0.82397 0.72171 0.88413 0.88969 0.88426 0.91135 0.91418 0.88851 0.89253 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -38.92 11.56 21.84 0.25 -38.67 16 2 C 0.03 1.45 5.47 85.29 0.47 1.92 16 3 Si 0.99 36.81 29.57 68.60 2.03 38.83 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 7 C -0.47 -24.97 9.13 23.47 0.21 -24.76 16 8 H 0.09 4.63 7.86 -2.91 -0.02 4.61 16 9 C 0.25 13.88 6.52 40.21 0.26 14.14 16 10 C -0.30 -15.61 9.83 22.87 0.22 -15.39 16 11 C -0.05 -2.29 10.15 22.39 0.23 -2.06 16 12 C -0.33 -16.56 8.83 22.72 0.20 -16.36 16 13 C 0.35 17.87 7.51 133.27 1.00 18.88 16 14 N -0.64 -26.75 5.36 -311.31 -1.67 -28.42 16 15 C 0.56 22.29 7.61 86.68 0.66 22.94 16 16 O -0.53 -23.87 12.02 16.71 0.20 -23.67 16 17 C -0.22 -6.87 5.90 -19.97 -0.12 -6.98 16 18 C -0.03 -0.63 9.21 22.79 0.21 -0.42 16 19 C -0.14 -2.73 5.74 -19.85 -0.11 -2.85 16 20 C 0.18 3.79 6.63 42.36 0.28 4.08 16 21 N -0.53 -14.56 10.18 -296.22 -3.02 -17.57 16 22 C 0.36 11.30 7.78 85.19 0.66 11.96 16 23 O -0.48 -15.17 11.69 -66.47 -0.78 -15.95 16 24 C -0.07 -0.96 5.90 29.77 0.18 -0.78 16 25 C -0.12 -0.96 5.97 30.60 0.18 -0.78 16 26 C -0.12 -1.03 5.98 30.62 0.18 -0.85 16 27 C -0.08 -0.97 5.67 29.72 0.17 -0.80 16 28 N -0.53 -29.75 7.99 -186.40 -1.49 -31.24 16 29 H 0.28 12.90 8.29 -92.70 -0.77 12.13 16 30 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 31 H 0.13 5.32 8.06 -2.91 -0.02 5.29 16 32 H 0.13 6.62 5.34 -3.14 -0.02 6.60 16 33 H 0.41 15.22 6.95 -92.71 -0.64 14.58 16 34 H 0.16 3.33 6.52 -2.91 -0.02 3.32 16 35 H 0.42 9.95 9.06 -74.05 -0.67 9.28 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.07 0.61 8.10 -2.39 -0.02 0.59 16 40 H 0.07 0.62 8.10 -2.39 -0.02 0.60 16 41 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.09 1.01 8.13 -2.39 -0.02 0.99 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -73.51 358.69 0.19 -73.32 By element: Atomic # 1 Polarization: 41.68 SS G_CDS: -0.22 Total: 41.46 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 4.89 Total: 1.90 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -5.92 Total: -115.90 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -0.58 Total: -39.62 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.83 kcal Total: -73.51 0.19 -73.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.798 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds