Wall clock time and date at job start Tue Mar 31 2020 22:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86804 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46791 * 299.99941 * 3 2 1 6 6 H 1.48495 * 109.47242 * 59.99690 * 3 2 1 7 7 C 1.38657 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99779 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.35750 * 116.99912 * 185.06091 * 9 7 2 11 11 C 1.38903 * 120.07014 * 354.45840 * 10 9 7 12 12 C 1.38076 * 119.93099 * 180.02562 * 11 10 9 13 13 C 1.38321 * 120.06784 * 0.02562 * 12 11 10 14 14 C 1.38279 * 120.13969 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.96483 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46868 * 90.00424 * 15 14 13 17 17 O 1.21290 * 119.99646 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00478 * 179.97438 * 16 15 14 19 19 C 1.47210 * 121.29432 * 180.02562 * 18 16 15 20 20 C 1.52856 * 108.06336 * 115.91592 * 19 18 16 21 21 C 1.50404 * 110.74032 * 47.30443 * 20 19 18 22 22 N 1.32969 * 118.39748 * 160.48390 * 21 20 19 23 23 C 1.31572 * 121.10371 * 178.85085 * 22 21 20 24 24 N 1.31818 * 121.72865 * 0.05487 * 23 22 21 25 25 C 1.32206 * 120.58520 * 0.32047 * 24 23 22 26 26 C 1.37772 * 122.88849 * 339.85167 * 21 20 19 27 27 C 1.46794 * 121.28482 * 0.02562 * 18 16 15 28 28 C 1.38118 * 120.07192 * 0.28138 * 14 13 12 29 29 H 0.97002 * 120.00030 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.03268 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96584 * 179.97438 * 12 11 10 32 32 H 1.08005 * 119.93138 * 180.02562 * 13 12 11 33 33 H 1.09003 * 109.47388 * 330.00968 * 15 14 13 34 34 H 1.08998 * 109.47508 * 210.00042 * 15 14 13 35 35 H 1.09010 * 109.74273 * 235.55536 * 19 18 16 36 36 H 1.09004 * 109.74304 * 356.26835 * 19 18 16 37 37 H 1.08997 * 109.22480 * 167.65403 * 20 19 18 38 38 H 1.09005 * 109.22089 * 287.04431 * 20 19 18 39 39 H 1.07992 * 119.13714 * 180.08613 * 23 22 21 40 40 H 1.08006 * 120.38840 * 179.84030 * 25 24 23 41 41 H 1.09005 * 109.46475 * 104.29255 * 27 18 16 42 42 H 1.08995 * 109.47138 * 344.31065 * 27 18 16 43 43 H 1.07993 * 120.03982 * 179.69962 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0016 10 6 2.0699 -3.5045 0.1088 11 6 3.4574 -3.4395 0.0952 12 6 4.2025 -4.5968 0.2038 13 6 3.5686 -5.8202 0.3256 14 6 2.1876 -5.8883 0.3395 15 6 1.5011 -7.2234 0.4717 16 6 1.2797 -7.5320 1.9301 17 8 1.6431 -6.7450 2.7785 18 7 0.6769 -8.6819 2.2917 19 6 0.4459 -9.0118 3.7076 20 6 -1.0637 -9.0721 3.9400 21 6 -1.7353 -9.8875 2.8694 22 7 -2.9493 -10.3726 3.1120 23 6 -3.5949 -11.0738 2.2050 24 7 -3.0709 -11.3269 1.0222 25 6 -1.8647 -10.8835 0.7120 26 6 -1.1531 -10.1418 1.6469 27 6 0.2253 -9.6540 1.2887 28 6 1.4366 -4.7348 0.2258 29 1 -0.4850 0.8401 0.0004 30 1 3.9528 -2.4847 -0.0011 31 1 5.2813 -4.5469 0.1929 32 1 4.1536 -6.7241 0.4109 33 1 2.1252 -7.9986 0.0271 34 1 0.5406 -7.1907 -0.0426 35 1 0.8928 -9.9790 3.9381 36 1 0.8857 -8.2418 4.3416 37 1 -1.2594 -9.5246 4.9121 38 1 -1.4695 -8.0604 3.9270 39 1 -4.5800 -11.4514 2.4353 40 1 -1.4374 -11.0950 -0.2571 41 1 0.9147 -10.4981 1.2648 42 1 0.1991 -9.1788 0.3082 43 1 0.3580 -4.7891 0.2318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883037923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:16 Heat of formation + Delta-G solvation = 19.381023 kcal Electronic energy + Delta-G solvation = -27906.931992 eV Core-core repulsion = 23918.171550 eV Total energy + Delta-G solvation = -3988.760442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74648 -40.03962 -38.86403 -37.06015 -36.30756 -34.66023 -32.65858 -32.44691 -32.16520 -31.26038 -29.18876 -27.47293 -26.60711 -25.34121 -24.94950 -23.66982 -22.44953 -21.60488 -20.83134 -19.36944 -18.08946 -17.65174 -17.44026 -16.98527 -16.62796 -16.39612 -15.86127 -15.42056 -15.03968 -14.73221 -14.41065 -14.35831 -14.23206 -14.03505 -13.84273 -13.58070 -13.48956 -13.29208 -12.85733 -12.56900 -12.52978 -12.41152 -11.91006 -11.82484 -11.53749 -11.35147 -11.26397 -10.85568 -10.83827 -10.74972 -10.60014 -10.40530 -9.86205 -9.67476 -9.61973 -9.30866 -8.98986 -8.81238 -8.05474 -7.19480 -6.41337 -4.00290 0.46680 0.64579 2.07486 2.40550 2.60970 2.72163 3.14481 3.16214 3.21577 3.33135 3.62946 3.80432 3.98270 3.99424 4.13398 4.28672 4.47151 4.64499 4.79609 4.83938 4.87301 4.93900 4.98010 5.05389 5.15466 5.17030 5.29119 5.40100 5.44415 5.54688 5.59943 5.65159 5.75545 5.94248 5.99036 6.11870 6.20070 6.35615 6.56677 6.67069 6.93259 7.09973 7.14877 7.27525 7.39191 7.46633 7.69025 7.84594 8.03772 8.12946 9.04599 9.75250 10.77036 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.002357 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.036272 B =11876.249064 C =12619.356163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.074 4.074 13 C -0.196 4.196 14 C -0.035 4.035 15 C -0.093 4.093 16 C 0.522 3.478 17 O -0.509 6.509 18 N -0.626 5.626 19 C 0.113 3.887 20 C -0.092 4.092 21 C 0.193 3.807 22 N -0.521 5.521 23 C 0.294 3.706 24 N -0.521 5.521 25 C 0.159 3.841 26 C -0.204 4.204 27 C 0.159 3.841 28 C -0.175 4.175 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.197 0.803 40 H 0.173 0.827 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 -23.615 2.671 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.035 4.035 15 C -0.133 4.133 16 C 0.311 3.689 17 O -0.382 6.382 18 N -0.362 5.362 19 C -0.010 4.010 20 C -0.130 4.130 21 C 0.048 3.952 22 N -0.235 5.235 23 C 0.006 3.994 24 N -0.235 5.235 25 C -0.009 4.009 26 C -0.209 4.209 27 C 0.035 3.965 28 C -0.194 4.194 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.213 0.787 40 H 0.190 0.810 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.615 -23.260 3.341 23.554 hybrid contribution 1.049 0.988 -0.220 1.457 sum -0.566 -22.272 3.121 22.496 Atomic orbital electron populations 1.70050 1.05944 1.27460 1.46476 1.25281 0.95837 0.98794 0.96659 0.85653 0.79144 0.80450 0.78208 1.19112 1.20187 1.20166 1.21366 0.91803 0.80823 1.52656 0.89053 1.83976 1.34273 1.11400 1.78705 1.19271 0.90257 0.87956 0.92374 1.21185 0.93829 0.98984 1.10913 1.20679 0.98388 0.92294 0.97909 1.20333 0.93222 0.97015 1.10945 1.18633 0.93244 0.91821 0.99829 1.20642 1.02487 0.97376 0.92765 1.20781 0.76580 0.79636 0.91900 1.90774 1.48741 1.45977 1.52703 1.48156 1.61088 1.20225 1.06721 1.21589 0.93834 1.02554 0.82985 1.20842 0.95111 1.00242 0.96829 1.21220 0.89816 0.91193 0.92929 1.68447 1.08403 1.11193 1.35489 1.24949 0.99455 0.90454 0.84505 1.68477 1.12262 1.22018 1.20733 1.23203 0.89312 0.89595 0.98746 1.21419 0.99786 1.03043 0.96659 1.20343 0.90174 0.92951 0.93052 1.19928 0.98999 0.89982 1.10480 0.92144 0.85600 0.87454 0.87921 0.88193 0.88277 0.90713 0.87395 0.87952 0.88319 0.78684 0.81020 0.89352 0.87728 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.78 13.67 55.48 0.76 -25.03 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.39 -11.13 9.49 30.89 0.29 -10.84 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.26 9.76 0.04 0.00 -5.25 16 10 C 0.15 3.85 6.65 -39.10 -0.26 3.59 16 11 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 12 C -0.07 -1.41 10.04 -39.61 -0.40 -1.81 16 13 C -0.20 -3.44 9.70 -39.54 -0.38 -3.83 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -1.16 4.25 -29.03 -0.12 -1.28 16 16 C 0.52 7.16 7.71 -10.99 -0.08 7.08 16 17 O -0.51 -9.46 15.51 5.55 0.09 -9.37 16 18 N -0.63 -6.20 2.94 -174.42 -0.51 -6.71 16 19 C 0.11 1.00 6.43 -3.73 -0.02 0.98 16 20 C -0.09 -0.80 6.13 -28.10 -0.17 -0.97 16 21 C 0.19 1.85 6.65 -82.41 -0.55 1.31 16 22 N -0.52 -5.38 10.31 -11.01 -0.11 -5.49 16 23 C 0.29 2.64 12.28 -92.32 -1.13 1.51 16 24 N -0.52 -4.81 10.45 -14.57 -0.15 -4.96 16 25 C 0.16 1.18 10.94 -17.13 -0.19 0.99 16 26 C -0.20 -1.63 5.82 -104.61 -0.61 -2.24 16 27 C 0.16 1.05 6.13 -5.11 -0.03 1.01 16 28 C -0.17 -3.78 9.64 -39.39 -0.38 -4.16 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.10 0.90 8.06 -51.93 -0.42 0.48 16 34 H 0.10 1.06 7.52 -51.93 -0.39 0.67 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.11 1.12 7.07 -51.93 -0.37 0.75 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 0.54 6.20 -51.93 -0.32 0.21 16 43 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -36.75 365.27 -9.42 -46.16 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.01 Total: 3.55 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -4.96 Total: -14.28 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.02 Total: -42.19 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.09 Total: -14.63 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.75 -9.42 -46.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883037923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.545 kcal (2) G-P(sol) polarization free energy of solvation -36.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds