Wall clock time and date at job start Tue Mar 31 2020 22:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86804 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46791 * 299.99941 * 3 2 1 6 6 H 1.48495 * 109.47242 * 59.99690 * 3 2 1 7 7 C 1.38657 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99779 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.35750 * 116.99912 * 185.06091 * 9 7 2 11 11 C 1.38903 * 120.07014 * 354.45840 * 10 9 7 12 12 C 1.38076 * 119.93099 * 180.02562 * 11 10 9 13 13 C 1.38321 * 120.06784 * 0.02562 * 12 11 10 14 14 C 1.38279 * 120.13969 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.96483 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46868 * 90.00424 * 15 14 13 17 17 O 1.21290 * 119.99646 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00478 * 179.97438 * 16 15 14 19 19 C 1.47210 * 121.29432 * 180.02562 * 18 16 15 20 20 C 1.52856 * 108.06336 * 115.91592 * 19 18 16 21 21 C 1.50404 * 110.74032 * 47.30443 * 20 19 18 22 22 N 1.32969 * 118.39748 * 160.48390 * 21 20 19 23 23 C 1.31572 * 121.10371 * 178.85085 * 22 21 20 24 24 N 1.31818 * 121.72865 * 0.05487 * 23 22 21 25 25 C 1.32206 * 120.58520 * 0.32047 * 24 23 22 26 26 C 1.37772 * 122.88849 * 339.85167 * 21 20 19 27 27 C 1.46794 * 121.28482 * 0.02562 * 18 16 15 28 28 C 1.38118 * 120.07192 * 0.28138 * 14 13 12 29 29 H 0.97002 * 120.00030 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.03268 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96584 * 179.97438 * 12 11 10 32 32 H 1.08005 * 119.93138 * 180.02562 * 13 12 11 33 33 H 1.09003 * 109.47388 * 330.00968 * 15 14 13 34 34 H 1.08998 * 109.47508 * 210.00042 * 15 14 13 35 35 H 1.09010 * 109.74273 * 235.55536 * 19 18 16 36 36 H 1.09004 * 109.74304 * 356.26835 * 19 18 16 37 37 H 1.08997 * 109.22480 * 167.65403 * 20 19 18 38 38 H 1.09005 * 109.22089 * 287.04431 * 20 19 18 39 39 H 1.07992 * 119.13714 * 180.08613 * 23 22 21 40 40 H 1.08006 * 120.38840 * 179.84030 * 25 24 23 41 41 H 1.09005 * 109.46475 * 104.29255 * 27 18 16 42 42 H 1.08995 * 109.47138 * 344.31065 * 27 18 16 43 43 H 1.07993 * 120.03982 * 179.69962 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0016 10 6 2.0699 -3.5045 0.1088 11 6 3.4574 -3.4395 0.0952 12 6 4.2025 -4.5968 0.2038 13 6 3.5686 -5.8202 0.3256 14 6 2.1876 -5.8883 0.3395 15 6 1.5011 -7.2234 0.4717 16 6 1.2797 -7.5320 1.9301 17 8 1.6431 -6.7450 2.7785 18 7 0.6769 -8.6819 2.2917 19 6 0.4459 -9.0118 3.7076 20 6 -1.0637 -9.0721 3.9400 21 6 -1.7353 -9.8875 2.8694 22 7 -2.9493 -10.3726 3.1120 23 6 -3.5949 -11.0738 2.2050 24 7 -3.0709 -11.3269 1.0222 25 6 -1.8647 -10.8835 0.7120 26 6 -1.1531 -10.1418 1.6469 27 6 0.2253 -9.6540 1.2887 28 6 1.4366 -4.7348 0.2258 29 1 -0.4850 0.8401 0.0004 30 1 3.9528 -2.4847 -0.0011 31 1 5.2813 -4.5469 0.1929 32 1 4.1536 -6.7241 0.4109 33 1 2.1252 -7.9986 0.0271 34 1 0.5406 -7.1907 -0.0426 35 1 0.8928 -9.9790 3.9381 36 1 0.8857 -8.2418 4.3416 37 1 -1.2594 -9.5246 4.9121 38 1 -1.4695 -8.0604 3.9270 39 1 -4.5800 -11.4514 2.4353 40 1 -1.4374 -11.0950 -0.2571 41 1 0.9147 -10.4981 1.2648 42 1 0.1991 -9.1788 0.3082 43 1 0.3580 -4.7891 0.2318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883037923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:15 Heat of formation + Delta-G solvation = -4.855431 kcal Electronic energy + Delta-G solvation = -27907.982963 eV Core-core repulsion = 23918.171550 eV Total energy + Delta-G solvation = -3989.811413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40068 -41.15073 -40.45257 -38.36898 -37.60182 -35.33512 -34.34793 -33.66476 -33.19458 -32.17985 -30.84985 -28.70069 -27.44795 -27.16852 -25.79267 -24.29513 -23.48606 -23.14325 -22.27396 -20.29868 -19.45499 -18.90091 -18.69057 -18.14662 -17.42959 -17.24974 -16.86383 -16.58857 -16.39555 -16.08547 -15.99431 -15.51047 -15.26804 -14.99218 -14.97738 -14.74490 -14.50056 -14.38398 -14.12030 -13.92560 -13.61421 -13.48287 -13.27763 -12.96724 -12.80413 -12.62556 -12.47292 -12.30574 -12.20726 -12.08219 -12.01985 -11.54789 -11.19987 -10.96415 -10.80007 -10.31574 -10.27496 -9.78279 -9.62158 -8.96253 -8.47611 -6.15886 -0.14848 0.02667 0.52807 0.77460 1.33275 1.42213 1.52132 1.60298 1.88040 2.17093 2.70289 2.83136 2.99562 3.14563 3.26715 3.40513 3.45031 3.54945 3.65555 3.85458 3.89876 4.07181 4.11787 4.15628 4.32768 4.37985 4.41992 4.46349 4.56368 4.60379 4.64198 4.64501 4.75187 4.75463 4.86362 4.90126 5.08094 5.13565 5.31715 5.37409 5.40249 5.66642 5.74185 5.76886 5.94761 6.03036 6.22347 6.33731 6.97363 7.06358 7.15189 7.79543 8.76326 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.002357 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.036272 B =11876.249064 C =12619.356163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 1.020 2.980 4 H -0.251 1.251 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.236 6.236 10 C 0.110 3.890 11 C -0.247 4.247 12 C -0.074 4.074 13 C -0.177 4.177 14 C -0.025 4.025 15 C -0.091 4.091 16 C 0.522 3.478 17 O -0.572 6.572 18 N -0.617 5.617 19 C 0.115 3.885 20 C -0.086 4.086 21 C 0.169 3.831 22 N -0.546 5.546 23 C 0.284 3.716 24 N -0.538 5.538 25 C 0.162 3.838 26 C -0.203 4.203 27 C 0.155 3.845 28 C -0.193 4.193 29 H 0.272 0.728 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.216 0.784 40 H 0.211 0.789 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -27.029 1.573 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.174 1.174 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.118 0.882 9 O -0.143 6.143 10 C 0.060 3.940 11 C -0.266 4.266 12 C -0.092 4.092 13 C -0.195 4.195 14 C -0.026 4.026 15 C -0.130 4.130 16 C 0.311 3.689 17 O -0.450 6.450 18 N -0.351 5.351 19 C -0.008 4.008 20 C -0.124 4.124 21 C 0.025 3.975 22 N -0.260 5.260 23 C -0.004 4.004 24 N -0.252 5.252 25 C -0.006 4.006 26 C -0.207 4.207 27 C 0.032 3.968 28 C -0.213 4.213 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.138 0.862 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.093 0.907 39 H 0.232 0.768 40 H 0.227 0.773 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.826 -26.776 2.233 26.882 hybrid contribution 0.330 1.631 0.147 1.671 sum 1.156 -25.145 2.381 25.284 Atomic orbital electron populations 1.70197 1.08051 1.28650 1.49275 1.26614 0.96887 1.02775 0.95968 0.84519 0.78232 0.74774 0.78593 1.17448 1.19057 1.19486 1.21859 0.92481 0.81504 1.52977 0.88219 1.83934 1.35979 1.12604 1.81808 1.19895 0.91713 0.87912 0.94435 1.21298 0.93097 1.00263 1.11953 1.21149 1.00240 0.91505 0.96293 1.20992 0.93409 0.98206 1.06910 1.19189 0.93789 0.92962 0.96665 1.20786 1.04160 0.95475 0.92583 1.20928 0.76323 0.79844 0.91768 1.90768 1.51911 1.48137 1.54220 1.48144 1.59415 1.19607 1.07913 1.21640 0.93684 1.03164 0.82335 1.20744 0.95032 0.99012 0.97634 1.21392 0.90143 0.91967 0.93964 1.68431 1.09097 1.12086 1.36427 1.25383 1.00240 0.90269 0.84497 1.68547 1.13293 1.22611 1.20714 1.23830 0.88535 0.88356 0.99859 1.21586 1.00470 1.02776 0.95916 1.20759 0.89841 0.93410 0.92767 1.20208 0.99107 0.90581 1.11389 0.91908 0.86632 0.83682 0.83080 0.82926 0.86246 0.87834 0.89495 0.86963 0.90729 0.76809 0.77273 0.85611 0.85412 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.47 13.67 21.61 0.30 -58.18 16 2 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 3 Si 1.02 44.33 29.55 68.60 2.03 46.36 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.41 -24.97 9.49 67.92 0.64 -24.32 16 8 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 9 O -0.24 -14.87 9.76 -22.76 -0.22 -15.09 16 10 C 0.11 5.78 6.65 22.58 0.15 5.93 16 11 C -0.25 -11.28 9.17 22.39 0.21 -11.07 16 12 C -0.07 -2.61 10.04 22.25 0.22 -2.39 16 13 C -0.18 -5.47 9.70 22.30 0.22 -5.26 16 14 C -0.03 -0.84 4.37 -19.88 -0.09 -0.93 16 15 C -0.09 -1.87 4.25 29.10 0.12 -1.75 16 16 C 0.52 12.94 7.71 87.66 0.68 13.62 16 17 O -0.57 -20.99 15.51 -3.06 -0.05 -21.04 16 18 N -0.62 -10.29 2.94 -824.12 -2.42 -12.71 16 19 C 0.11 1.85 6.43 86.20 0.55 2.40 16 20 C -0.09 -1.47 6.13 29.71 0.18 -1.29 16 21 C 0.17 3.02 6.65 42.18 0.28 3.30 16 22 N -0.55 -10.90 10.31 -188.73 -1.95 -12.85 16 23 C 0.28 4.78 12.28 180.94 2.22 7.00 16 24 N -0.54 -8.73 10.45 -200.00 -2.09 -10.82 16 25 C 0.16 1.82 10.94 84.81 0.93 2.74 16 26 C -0.20 -2.58 5.82 -19.85 -0.12 -2.70 16 27 C 0.16 1.25 6.13 85.53 0.52 1.78 16 28 C -0.19 -8.60 9.64 22.39 0.22 -8.38 16 29 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.12 5.37 5.64 -2.91 -0.02 5.36 16 31 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.15 1.59 8.06 -2.39 -0.02 1.57 16 34 H 0.12 2.05 7.52 -2.39 -0.02 2.03 16 35 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.09 1.81 7.07 -2.38 -0.02 1.79 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.22 2.36 8.06 -2.91 -0.02 2.33 16 40 H 0.21 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.13 0.24 8.14 -2.38 -0.02 0.23 16 42 H 0.13 0.50 6.20 -2.39 -0.01 0.49 16 43 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -90.02 365.27 4.06 -85.96 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 1.05 Total: 20.72 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 7.41 Total: -22.36 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -6.16 Total: -94.56 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.27 Total: -36.13 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -90.02 4.06 -85.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883037923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.108 kcal (2) G-P(sol) polarization free energy of solvation -90.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds