Wall clock time and date at job start Tue Mar 31 2020 23:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99766 * 2 1 4 4 O 1.20823 * 119.99904 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99911 * 180.02562 * 3 2 1 6 6 F 1.39900 * 110.88813 * 313.88246 * 5 3 2 7 7 C 1.55153 * 111.00639 * 189.99786 * 5 3 2 8 8 C 1.54325 * 102.94556 * 206.38458 * 7 5 3 9 9 N 1.47019 * 107.26875 * 22.19778 * 8 7 5 10 10 C 1.34782 * 125.65028 * 181.02593 * 9 8 7 11 11 O 1.21597 * 120.00199 * 180.02562 * 10 9 8 12 12 C 1.47433 * 119.99511 * 0.02562 * 10 9 8 13 13 C 1.41288 * 126.41739 * 0.02562 * 12 10 9 14 14 N 1.30439 * 108.02422 * 179.97438 * 13 12 10 15 15 N 1.39933 * 108.89559 * 359.74597 * 14 13 12 16 16 C 1.46504 * 125.75489 * 180.27116 * 15 14 13 17 17 C 1.50698 * 109.47137 * 270.18197 * 16 15 14 18 18 H 1.07998 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00108 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00209 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99930 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46957 * 89.99873 * 21 19 17 23 23 H 1.48494 * 109.46911 * 209.99996 * 21 19 17 24 24 H 1.48494 * 109.46906 * 330.00105 * 21 19 17 25 25 C 1.34253 * 108.49336 * 0.42671 * 15 14 13 26 26 C 1.50703 * 126.29324 * 179.84703 * 25 15 14 27 27 C 1.47428 * 108.70452 * 1.28228 * 9 8 7 28 28 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46746 * 299.99720 * 1 2 3 30 30 H 1.08996 * 109.47508 * 60.00128 * 1 2 3 31 31 H 1.08997 * 110.71850 * 88.02015 * 7 5 3 32 32 H 1.09007 * 110.71861 * 324.75074 * 7 5 3 33 33 H 1.08994 * 109.88631 * 262.77488 * 8 7 5 34 34 H 1.09001 * 110.01150 * 141.68171 * 8 7 5 35 35 H 1.08007 * 125.98809 * 0.02562 * 13 12 10 36 36 H 1.08999 * 109.47008 * 30.17816 * 16 15 14 37 37 H 1.08998 * 109.47538 * 150.18089 * 16 15 14 38 38 H 0.96992 * 120.00274 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.47152 * 269.68719 * 26 25 15 40 40 H 1.09001 * 109.46980 * 149.68819 * 26 25 15 41 41 H 1.09004 * 109.47113 * 29.68800 * 26 25 15 42 42 H 1.08993 * 110.36665 * 94.48737 * 27 9 8 43 43 H 1.09002 * 110.36459 * 216.80834 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 9 4.1122 0.3961 0.9411 7 6 4.0471 2.7285 0.2510 8 6 5.4289 2.7592 -0.4356 9 7 5.4452 1.6784 -1.4321 10 6 6.4839 1.3617 -2.2305 11 8 6.3847 0.4439 -3.0220 12 6 7.7404 2.1281 -2.1441 13 6 8.0031 3.2134 -1.2786 14 7 9.2219 3.6214 -1.5012 15 7 9.7910 2.8247 -2.5010 16 6 11.1497 2.9585 -3.0324 17 6 11.1404 3.9096 -4.2013 18 1 10.2150 4.3682 -4.5171 19 6 12.3135 4.1943 -4.8677 20 7 12.3053 5.0239 -5.8881 21 14 13.9142 3.4017 -4.3211 22 1 14.1045 2.1197 -5.0459 23 1 15.0465 4.3138 -4.6229 24 1 13.8641 3.1415 -2.8600 25 6 8.8808 1.9192 -2.8935 26 6 9.0713 0.8644 -3.9528 27 6 4.1352 1.0023 -1.4179 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.1428 2.9236 1.3191 32 1 3.3695 3.4447 -0.2138 33 1 6.2135 2.5946 0.3028 34 1 5.5793 3.7199 -0.9282 35 1 7.3155 3.6315 -0.5581 36 1 11.8076 3.3455 -2.2543 37 1 11.5093 1.9832 -3.3604 38 1 13.1304 5.2240 -6.3571 39 1 8.7684 1.2629 -4.9210 40 1 8.4620 -0.0068 -3.7118 41 1 10.1212 0.5740 -3.9917 42 1 3.4812 1.4264 -2.1797 43 1 4.2594 -0.0689 -1.5768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896788630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:06 Heat of formation + Delta-G solvation = -73.136571 kcal Electronic energy + Delta-G solvation = -29503.378126 eV Core-core repulsion = 25079.836596 eV Total energy + Delta-G solvation = -4423.541530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.35853 -41.14524 -40.90933 -39.35806 -37.44379 -36.71671 -33.97648 -32.41216 -31.81395 -31.26490 -30.07209 -28.50186 -27.60662 -26.87328 -24.83860 -23.52970 -22.96296 -21.33234 -20.87645 -20.05252 -18.74035 -18.58474 -17.66711 -17.30558 -17.24156 -16.87653 -15.87840 -15.79641 -15.60052 -15.42441 -14.95858 -14.81296 -14.66538 -14.25723 -13.75405 -13.71480 -13.54368 -13.32695 -13.14461 -12.79977 -12.71266 -12.61853 -12.55203 -12.37593 -12.21103 -11.96207 -11.75181 -11.60561 -11.45383 -11.34914 -11.24090 -10.95003 -10.85615 -10.43269 -10.28754 -9.81757 -9.57844 -8.86939 -8.86577 -8.66188 -8.03176 -6.34568 -4.39464 1.39240 1.86236 2.03780 2.67763 2.81373 3.08325 3.14716 3.17216 3.27145 3.40021 3.62816 3.72976 3.88877 4.14184 4.27910 4.49041 4.62211 4.71309 4.74601 4.87342 4.98608 5.04865 5.07564 5.20177 5.24447 5.26399 5.37370 5.44232 5.56756 5.60027 5.70803 5.73475 5.97310 6.09685 6.25145 6.41242 6.45383 6.55830 6.96669 7.00604 7.16193 7.44091 7.51757 8.17682 8.21713 8.38513 8.68380 9.19151 10.77586 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.002315 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.335279 B =12092.313103 C =12309.904478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.345 6.345 3 C 0.462 3.538 4 O -0.481 6.481 5 C 0.116 3.884 6 F -0.168 7.168 7 C -0.139 4.139 8 C 0.095 3.905 9 N -0.620 5.620 10 C 0.625 3.375 11 O -0.546 6.546 12 C -0.327 4.327 13 C 0.049 3.951 14 N -0.291 5.291 15 N -0.312 5.312 16 C 0.224 3.776 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.081 3.919 20 N -0.882 5.882 21 Si 0.873 3.127 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 C 0.172 3.828 26 C -0.095 4.095 27 C 0.104 3.896 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.187 0.813 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.270 0.730 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.013 -9.235 12.989 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.260 6.260 3 C 0.301 3.699 4 O -0.367 6.367 5 C 0.096 3.904 6 F -0.148 7.148 7 C -0.177 4.177 8 C -0.028 4.028 9 N -0.356 5.356 10 C 0.419 3.581 11 O -0.424 6.424 12 C -0.342 4.342 13 C -0.138 4.138 14 N -0.111 5.111 15 N -0.088 5.088 16 C 0.105 3.895 17 C -0.583 4.583 18 H 0.100 0.900 19 C -0.124 4.124 20 N -0.519 5.519 21 Si 0.698 3.302 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.188 1.188 25 C 0.035 3.965 26 C -0.153 4.153 27 C -0.020 4.020 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.204 0.796 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.974 -8.485 12.664 24.339 hybrid contribution 0.023 -0.662 0.120 0.673 sum -18.951 -9.148 12.784 24.622 Atomic orbital electron populations 1.23415 0.75349 1.04377 1.02926 1.86577 1.24149 1.32223 1.83091 1.23449 0.90943 0.82259 0.73204 1.90719 1.66009 1.36154 1.43823 1.21833 0.85753 0.92032 0.90795 1.92987 1.86180 1.70142 1.65513 1.23344 0.97423 0.92572 1.04358 1.22442 0.96668 0.92140 0.91532 1.48024 1.12726 1.34692 1.40153 1.16941 0.80914 0.82028 0.78212 1.90719 1.82408 1.31284 1.38010 1.19473 0.96157 1.07993 1.10563 1.24379 0.94804 0.95265 0.99336 1.77172 1.09873 1.16616 1.07405 1.48936 1.12939 1.20971 1.25993 1.20172 0.74373 0.98945 0.95975 1.21077 0.97391 1.27275 1.12606 0.90026 1.24795 0.98702 0.94527 0.94350 1.69857 1.28368 1.33741 1.19895 0.86902 0.83503 0.79952 0.79813 1.19495 1.20353 1.18780 1.21448 0.88473 0.91883 0.94698 1.20614 1.03033 0.95849 0.95809 1.22554 0.85903 1.01360 0.92197 0.87504 0.91507 0.91367 0.87538 0.86779 0.89628 0.89206 0.79606 0.92655 0.93371 0.91953 0.89363 0.88650 0.90979 0.89167 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.24 16 2 O -0.34 -3.02 10.55 -39.26 -0.41 -3.43 16 3 C 0.46 4.38 7.04 36.00 0.25 4.63 16 4 O -0.48 -5.19 15.43 -18.75 -0.29 -5.48 16 5 C 0.12 1.08 1.59 -89.51 -0.14 0.94 16 6 F -0.17 -1.81 17.01 2.25 0.04 -1.77 16 7 C -0.14 -1.05 5.98 -24.90 -0.15 -1.20 16 8 C 0.10 0.88 4.99 -3.06 -0.02 0.86 16 9 N -0.62 -7.80 3.33 -171.64 -0.57 -8.37 16 10 C 0.63 10.29 7.85 -12.51 -0.10 10.19 16 11 O -0.55 -10.18 15.09 5.28 0.08 -10.10 16 12 C -0.33 -5.83 6.09 -105.07 -0.64 -6.47 16 13 C 0.05 0.82 10.44 -16.98 -0.18 0.64 16 14 N -0.29 -6.03 12.50 30.86 0.39 -5.64 16 15 N -0.31 -6.78 3.56 -57.77 -0.21 -6.99 16 16 C 0.22 5.14 5.04 -5.19 -0.03 5.12 16 17 C -0.55 -14.77 9.94 -34.44 -0.34 -15.11 16 18 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.88 -25.63 13.96 55.43 0.77 -24.86 16 21 Si 0.87 19.58 27.47 -169.99 -4.67 14.91 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 25 C 0.17 3.39 7.01 -81.60 -0.57 2.82 16 26 C -0.09 -1.65 9.57 36.01 0.34 -1.30 16 27 C 0.10 1.09 6.19 -2.41 -0.01 1.08 16 28 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.11 0.82 7.26 -51.93 -0.38 0.44 16 33 H 0.09 0.74 6.83 -51.93 -0.35 0.39 16 34 H 0.09 0.77 6.99 -51.93 -0.36 0.41 16 35 H 0.19 2.26 4.47 -52.48 -0.23 2.02 16 36 H 0.06 1.27 7.20 -51.93 -0.37 0.90 16 37 H 0.05 1.02 6.44 -51.93 -0.33 0.68 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.09 1.57 6.50 -51.93 -0.34 1.23 16 41 H 0.07 1.17 7.04 -51.93 -0.37 0.80 16 42 H 0.09 0.85 8.04 -51.93 -0.42 0.44 16 43 H 0.11 1.17 8.03 -51.93 -0.42 0.75 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -33.82 363.25 -5.29 -39.10 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.28 Total: 1.59 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -0.61 Total: 5.56 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.38 Total: -45.86 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.62 Total: -19.01 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.67 Total: 14.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.82 -5.29 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896788630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.032 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds