Wall clock time and date at job start Tue Mar 31 2020 23:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99766 * 2 1 4 4 O 1.20823 * 119.99904 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99911 * 180.02562 * 3 2 1 6 6 F 1.39900 * 110.88813 * 313.88246 * 5 3 2 7 7 C 1.55153 * 111.00639 * 189.99786 * 5 3 2 8 8 C 1.54325 * 102.94556 * 206.38458 * 7 5 3 9 9 N 1.47019 * 107.26875 * 22.19778 * 8 7 5 10 10 C 1.34782 * 125.65028 * 181.02593 * 9 8 7 11 11 O 1.21597 * 120.00199 * 180.02562 * 10 9 8 12 12 C 1.47433 * 119.99511 * 0.02562 * 10 9 8 13 13 C 1.41288 * 126.41739 * 0.02562 * 12 10 9 14 14 N 1.30439 * 108.02422 * 179.97438 * 13 12 10 15 15 N 1.39933 * 108.89559 * 359.74597 * 14 13 12 16 16 C 1.46504 * 125.75489 * 180.27116 * 15 14 13 17 17 C 1.50698 * 109.47137 * 270.18197 * 16 15 14 18 18 H 1.07998 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00108 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00209 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99930 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46957 * 89.99873 * 21 19 17 23 23 H 1.48494 * 109.46911 * 209.99996 * 21 19 17 24 24 H 1.48494 * 109.46906 * 330.00105 * 21 19 17 25 25 C 1.34253 * 108.49336 * 0.42671 * 15 14 13 26 26 C 1.50703 * 126.29324 * 179.84703 * 25 15 14 27 27 C 1.47428 * 108.70452 * 1.28228 * 9 8 7 28 28 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46746 * 299.99720 * 1 2 3 30 30 H 1.08996 * 109.47508 * 60.00128 * 1 2 3 31 31 H 1.08997 * 110.71850 * 88.02015 * 7 5 3 32 32 H 1.09007 * 110.71861 * 324.75074 * 7 5 3 33 33 H 1.08994 * 109.88631 * 262.77488 * 8 7 5 34 34 H 1.09001 * 110.01150 * 141.68171 * 8 7 5 35 35 H 1.08007 * 125.98809 * 0.02562 * 13 12 10 36 36 H 1.08999 * 109.47008 * 30.17816 * 16 15 14 37 37 H 1.08998 * 109.47538 * 150.18089 * 16 15 14 38 38 H 0.96992 * 120.00274 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.47152 * 269.68719 * 26 25 15 40 40 H 1.09001 * 109.46980 * 149.68819 * 26 25 15 41 41 H 1.09004 * 109.47113 * 29.68800 * 26 25 15 42 42 H 1.08993 * 110.36665 * 94.48737 * 27 9 8 43 43 H 1.09002 * 110.36459 * 216.80834 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 9 4.1122 0.3961 0.9411 7 6 4.0471 2.7285 0.2510 8 6 5.4289 2.7592 -0.4356 9 7 5.4452 1.6784 -1.4321 10 6 6.4839 1.3617 -2.2305 11 8 6.3847 0.4439 -3.0220 12 6 7.7404 2.1281 -2.1441 13 6 8.0031 3.2134 -1.2786 14 7 9.2219 3.6214 -1.5012 15 7 9.7910 2.8247 -2.5010 16 6 11.1497 2.9585 -3.0324 17 6 11.1404 3.9096 -4.2013 18 1 10.2150 4.3682 -4.5171 19 6 12.3135 4.1943 -4.8677 20 7 12.3053 5.0239 -5.8881 21 14 13.9142 3.4017 -4.3211 22 1 14.1045 2.1197 -5.0459 23 1 15.0465 4.3138 -4.6229 24 1 13.8641 3.1415 -2.8600 25 6 8.8808 1.9192 -2.8935 26 6 9.0713 0.8644 -3.9528 27 6 4.1352 1.0023 -1.4179 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.1428 2.9236 1.3191 32 1 3.3695 3.4447 -0.2138 33 1 6.2135 2.5946 0.3028 34 1 5.5793 3.7199 -0.9282 35 1 7.3155 3.6315 -0.5581 36 1 11.8076 3.3455 -2.2543 37 1 11.5093 1.9832 -3.3604 38 1 13.1304 5.2240 -6.3571 39 1 8.7684 1.2629 -4.9210 40 1 8.4620 -0.0068 -3.7118 41 1 10.1212 0.5740 -3.9917 42 1 3.4812 1.4264 -2.1797 43 1 4.2594 -0.0689 -1.5768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896788630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:05 Heat of formation + Delta-G solvation = -95.824561 kcal Electronic energy + Delta-G solvation = -29504.361951 eV Core-core repulsion = 25079.836596 eV Total energy + Delta-G solvation = -4424.525355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.14663 -42.45264 -41.74872 -40.47717 -38.36365 -37.58009 -35.78468 -34.10747 -33.01371 -32.63430 -30.90977 -29.71967 -28.70697 -28.17397 -25.88834 -24.93709 -24.10597 -22.59974 -21.63290 -21.36721 -19.96015 -19.45958 -19.28297 -18.60096 -18.15126 -17.79384 -17.04111 -16.80795 -16.75975 -16.40581 -16.24078 -16.06259 -15.82152 -15.40337 -15.14511 -14.64255 -14.52389 -14.32233 -14.28399 -14.20189 -13.95352 -13.85957 -13.71410 -13.69378 -13.18195 -13.06147 -13.01990 -12.71303 -12.56126 -12.48795 -12.22990 -12.15273 -11.92703 -11.84898 -11.78685 -11.67196 -10.93209 -10.90788 -10.29871 -9.89767 -9.46999 -8.42588 -6.54619 0.58233 0.66709 1.18885 1.27322 1.34785 1.35795 1.45831 1.60551 1.94836 2.25071 2.41026 2.65570 2.89700 2.90644 3.19061 3.58212 3.65749 3.68475 3.80679 3.97050 4.07214 4.15419 4.23560 4.31739 4.32963 4.41127 4.45840 4.47728 4.59777 4.68437 4.69658 4.71068 4.76238 4.91788 5.03840 5.07707 5.08851 5.16004 5.18213 5.58941 5.81805 6.19609 6.30060 6.33654 6.48263 6.74933 7.09027 7.12470 8.73737 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.002315 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.335279 B =12092.313103 C =12309.904478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.466 3.534 4 O -0.495 6.495 5 C 0.119 3.881 6 F -0.176 7.176 7 C -0.128 4.128 8 C 0.084 3.916 9 N -0.616 5.616 10 C 0.623 3.377 11 O -0.575 6.575 12 C -0.328 4.328 13 C 0.070 3.930 14 N -0.330 5.330 15 N -0.336 5.336 16 C 0.233 3.767 17 C -0.552 4.552 18 H 0.026 0.974 19 C 0.023 3.977 20 N -0.935 5.935 21 Si 0.949 3.051 22 H -0.253 1.253 23 H -0.278 1.278 24 H -0.242 1.242 25 C 0.152 3.848 26 C -0.090 4.090 27 C 0.100 3.900 28 H 0.132 0.868 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.232 0.768 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.274 0.726 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.603 -10.263 15.118 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.307 3.693 4 O -0.383 6.383 5 C 0.099 3.901 6 F -0.157 7.157 7 C -0.165 4.165 8 C -0.038 4.038 9 N -0.350 5.350 10 C 0.416 3.584 11 O -0.456 6.456 12 C -0.343 4.343 13 C -0.117 4.117 14 N -0.149 5.149 15 N -0.113 5.113 16 C 0.113 3.887 17 C -0.590 4.590 18 H 0.045 0.955 19 C -0.178 4.178 20 N -0.573 5.573 21 Si 0.770 3.230 22 H -0.177 1.177 23 H -0.203 1.203 24 H -0.165 1.165 25 C 0.016 3.984 26 C -0.148 4.148 27 C -0.023 4.023 28 H 0.150 0.850 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.248 0.752 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.622 -9.520 14.833 26.375 hybrid contribution -0.058 -0.331 -0.526 0.624 sum -19.680 -9.851 14.307 26.249 Atomic orbital electron populations 1.23721 0.73550 1.06267 1.03254 1.86567 1.25978 1.31840 1.82698 1.23364 0.90851 0.82293 0.72820 1.90715 1.66289 1.36584 1.44673 1.21836 0.85803 0.92840 0.89670 1.92973 1.86318 1.70635 1.65730 1.23366 0.96134 0.91355 1.05673 1.22728 0.98340 0.91524 0.91212 1.47962 1.12409 1.35150 1.39487 1.16752 0.81311 0.81675 0.78666 1.90698 1.83018 1.32429 1.39455 1.19760 0.96320 1.08159 1.10074 1.25102 0.93949 0.93890 0.98751 1.77118 1.11699 1.17803 1.08320 1.48799 1.12961 1.22242 1.27265 1.19921 0.75786 0.98752 0.94247 1.21170 0.95509 1.28028 1.14319 0.95521 1.25819 1.03016 0.94890 0.94030 1.70019 1.29785 1.35792 1.21654 0.85704 0.77473 0.79233 0.80618 1.17678 1.20334 1.16518 1.21952 0.88947 0.92095 0.95403 1.20615 1.03855 0.95531 0.94782 1.22668 0.85097 1.00882 0.93666 0.84959 0.91129 0.91109 0.85260 0.85991 0.88462 0.88028 0.75239 0.92420 0.91072 0.91666 0.90272 0.87841 0.89930 0.87993 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.56 113.37 1.20 1.42 16 2 O -0.36 -5.63 10.55 -51.41 -0.54 -6.17 16 3 C 0.47 7.97 7.04 71.24 0.50 8.47 16 4 O -0.50 -9.69 15.43 21.97 0.34 -9.35 16 5 C 0.12 1.96 1.59 -10.07 -0.02 1.95 16 6 F -0.18 -3.44 17.01 44.97 0.76 -2.67 16 7 C -0.13 -1.54 5.98 31.78 0.19 -1.35 16 8 C 0.08 1.30 4.99 86.73 0.43 1.73 16 9 N -0.62 -14.41 3.33 -815.21 -2.71 -17.12 16 10 C 0.62 19.96 7.85 86.66 0.68 20.64 16 11 O -0.58 -21.33 15.09 -4.02 -0.06 -21.39 16 12 C -0.33 -11.46 6.09 -20.15 -0.12 -11.58 16 13 C 0.07 2.23 10.44 85.65 0.89 3.12 16 14 N -0.33 -13.53 12.50 -56.28 -0.70 -14.24 16 15 N -0.34 -14.65 3.56 -336.70 -1.20 -15.85 16 16 C 0.23 10.64 5.04 85.63 0.43 11.07 16 17 C -0.55 -30.84 9.94 25.60 0.25 -30.59 16 18 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 19 C 0.02 1.25 5.47 84.66 0.46 1.71 16 20 N -0.93 -56.01 13.96 21.45 0.30 -55.71 16 21 Si 0.95 39.93 27.47 68.60 1.88 41.81 16 22 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 23 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 25 C 0.15 5.99 7.01 42.14 0.30 6.29 16 26 C -0.09 -3.13 9.57 71.24 0.68 -2.45 16 27 C 0.10 1.96 6.19 86.93 0.54 2.50 16 28 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 30 H 0.07 0.61 8.13 -2.39 -0.02 0.59 16 31 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 1.36 7.26 -2.38 -0.02 1.34 16 33 H 0.10 1.34 6.83 -2.39 -0.02 1.32 16 34 H 0.10 1.40 6.99 -2.39 -0.02 1.38 16 35 H 0.23 4.86 4.47 -2.91 -0.01 4.85 16 36 H 0.06 2.60 7.20 -2.39 -0.02 2.58 16 37 H 0.07 2.90 6.44 -2.39 -0.02 2.89 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.10 3.40 6.50 -2.39 -0.02 3.39 16 41 H 0.08 2.63 7.04 -2.38 -0.02 2.62 16 42 H 0.10 1.77 8.04 -2.39 -0.02 1.76 16 43 H 0.10 2.08 8.03 -2.39 -0.02 2.06 16 Total: -1.00 -76.30 363.25 5.50 -70.80 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 1.01 Total: 16.96 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 6.42 Total: 12.93 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -4.31 Total: -102.91 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.26 Total: -36.92 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.76 Total: -2.67 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 1.88 Total: 41.81 kcal Total: -76.30 5.50 -70.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896788630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.023 kcal (2) G-P(sol) polarization free energy of solvation -76.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds