Wall clock time and date at job start Tue Mar 31 2020 23:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 F 1.39907 * 110.88464 * 54.01558 * 5 3 2 7 7 C 1.55157 * 111.00937 * 177.90205 * 5 3 2 8 8 C 1.54320 * 102.94311 * 153.57638 * 7 5 3 9 9 N 1.47024 * 107.27064 * 337.80540 * 8 7 5 10 10 C 1.34779 * 125.64465 * 178.97692 * 9 8 7 11 11 O 1.21608 * 119.99739 * 179.97438 * 10 9 8 12 12 C 1.47425 * 120.00142 * 359.97438 * 10 9 8 13 13 C 1.41289 * 126.41625 * 359.68020 * 12 10 9 14 14 N 1.30452 * 108.02390 * 179.85846 * 13 12 10 15 15 N 1.39931 * 108.89515 * 0.41213 * 14 13 12 16 16 C 1.46504 * 125.75502 * 179.73552 * 15 14 13 17 17 C 1.50701 * 109.46839 * 270.00122 * 16 15 14 18 18 H 1.08000 * 120.00321 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99490 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00497 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99942 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47270 * 59.99730 * 21 19 17 23 23 H 1.48500 * 109.47226 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47155 * 299.99967 * 21 19 17 25 25 C 1.34263 * 108.49238 * 359.73527 * 15 14 13 26 26 C 1.50698 * 126.28900 * 180.02562 * 25 15 14 27 27 C 1.47468 * 108.72564 * 358.97629 * 9 8 7 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 31 31 H 1.09008 * 110.71518 * 271.93760 * 7 5 3 32 32 H 1.09000 * 110.71975 * 35.03067 * 7 5 3 33 33 H 1.09001 * 109.88222 * 97.22560 * 8 7 5 34 34 H 1.09005 * 109.87739 * 218.23180 * 8 7 5 35 35 H 1.08005 * 125.98800 * 0.02562 * 13 12 10 36 36 H 1.09004 * 109.46485 * 29.99688 * 16 15 14 37 37 H 1.08997 * 109.47085 * 149.99708 * 16 15 14 38 38 H 0.97001 * 120.00133 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.47627 * 269.97342 * 26 25 15 40 40 H 1.08999 * 109.47325 * 29.97917 * 26 25 15 41 41 H 1.09001 * 109.46895 * 149.97578 * 26 25 15 42 42 H 1.08997 * 110.34791 * 265.25927 * 27 9 8 43 43 H 1.08992 * 110.40813 * 142.91442 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 9 4.1001 0.5365 -1.0678 7 6 4.0457 2.7497 -0.0581 8 6 5.4350 2.6853 0.6106 9 7 5.4614 1.4760 1.4464 10 6 6.5087 1.0518 2.1811 11 8 6.4174 0.0325 2.8380 12 6 7.7648 1.8235 2.1885 13 6 8.0208 3.0160 1.4753 14 7 9.2406 3.3928 1.7435 15 7 9.8180 2.4680 2.6206 16 6 11.1802 2.5313 3.1562 17 6 12.1176 1.7968 2.2328 18 1 11.7368 1.3292 1.3368 19 6 13.4614 1.7217 2.5318 20 7 13.9253 2.2915 3.6226 21 14 14.6234 0.8107 1.3876 22 1 14.5897 1.4409 0.0434 23 1 16.0042 0.8749 1.9305 24 1 14.2001 -0.6086 1.2796 25 6 8.9133 1.5129 2.8886 26 6 9.1144 0.3212 3.7888 27 6 4.1526 0.8038 1.3481 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 4.1297 3.0918 -1.0897 32 1 3.3722 3.3943 0.5069 33 1 6.2112 2.6256 -0.1524 34 1 5.5902 3.5696 1.2287 35 1 7.3271 3.5276 0.8244 36 1 11.4910 3.5730 3.2362 37 1 11.2046 2.0681 4.1426 38 1 14.8707 2.2383 3.8332 39 1 9.5030 -0.5135 3.2054 40 1 9.8241 0.5760 4.5758 41 1 8.1614 0.0391 4.2364 42 1 3.5055 1.1121 2.1693 43 1 4.2801 -0.2786 1.3502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896788631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:10 Heat of formation + Delta-G solvation = -79.031084 kcal Electronic energy + Delta-G solvation = -29496.126602 eV Core-core repulsion = 25072.329466 eV Total energy + Delta-G solvation = -4423.797136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.35043 -41.11140 -40.84627 -39.30758 -37.40897 -36.72173 -33.94635 -32.37381 -31.75596 -31.09310 -30.03354 -28.35451 -27.25799 -26.73080 -24.80465 -23.61150 -23.17393 -21.26141 -20.88246 -20.06982 -18.70452 -18.53636 -17.64274 -17.34630 -16.91183 -16.69801 -15.86550 -15.75159 -15.55066 -15.40346 -14.90264 -14.77121 -14.59683 -14.37820 -13.71246 -13.64256 -13.53418 -13.32152 -13.02605 -12.82110 -12.64074 -12.53507 -12.43107 -12.18420 -12.04546 -11.88324 -11.61175 -11.50719 -11.42302 -11.34584 -11.14493 -10.94837 -10.87401 -10.38220 -10.23011 -9.96925 -9.52262 -8.83283 -8.71454 -8.59530 -7.96881 -6.34400 -4.42405 1.39507 1.87189 2.10644 2.75311 2.85351 3.19909 3.23893 3.25934 3.36989 3.40641 3.65468 3.77828 3.92405 4.23712 4.28643 4.51772 4.62307 4.71411 4.76103 4.95558 5.02810 5.05185 5.14540 5.24237 5.26707 5.31621 5.39541 5.50636 5.58446 5.69977 5.70637 5.81577 6.07303 6.14622 6.44083 6.50270 6.77228 6.88948 7.00335 7.12279 7.48029 7.54324 7.75048 7.76504 8.31969 8.43610 8.62695 9.24565 10.73746 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.002335 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.891400 B =11987.179525 C =12027.836415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.345 6.345 3 C 0.462 3.538 4 O -0.481 6.481 5 C 0.117 3.883 6 F -0.167 7.167 7 C -0.138 4.138 8 C 0.095 3.905 9 N -0.621 5.621 10 C 0.625 3.375 11 O -0.547 6.547 12 C -0.330 4.330 13 C 0.046 3.954 14 N -0.295 5.295 15 N -0.313 5.313 16 C 0.251 3.749 17 C -0.541 4.541 18 H 0.065 0.935 19 C 0.068 3.932 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.169 3.831 26 C -0.094 4.094 27 C 0.103 3.897 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.185 0.815 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.270 0.730 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.236 -1.663 -5.461 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.260 6.260 3 C 0.302 3.698 4 O -0.367 6.367 5 C 0.096 3.904 6 F -0.147 7.147 7 C -0.176 4.176 8 C -0.027 4.027 9 N -0.357 5.357 10 C 0.419 3.581 11 O -0.425 6.425 12 C -0.345 4.345 13 C -0.141 4.141 14 N -0.114 5.114 15 N -0.089 5.089 16 C 0.134 3.866 17 C -0.579 4.579 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.031 3.969 26 C -0.152 4.152 27 C -0.021 4.021 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.202 0.798 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.144 -0.989 -5.121 23.725 hybrid contribution -0.106 -0.924 -0.753 1.197 sum -23.251 -1.913 -5.874 24.058 Atomic orbital electron populations 1.23415 0.75350 1.04394 1.02900 1.86577 1.24158 1.32227 1.83056 1.23458 0.90945 0.82232 0.73175 1.90716 1.66091 1.36174 1.43736 1.21798 0.85871 0.94725 0.88006 1.92998 1.86538 1.78204 1.56990 1.23321 0.97238 0.92140 1.04886 1.22431 0.96574 0.89070 0.94669 1.48046 1.12475 1.26155 1.48975 1.16979 0.80842 0.83293 0.77003 1.90718 1.82805 1.25506 1.43521 1.19478 0.95984 1.03777 1.15286 1.24351 0.94718 0.95307 0.99725 1.77168 1.08931 1.15197 1.10140 1.49409 1.12845 1.15294 1.31362 1.19868 0.71490 1.00398 0.94848 1.21199 0.92316 1.35667 1.08716 0.91701 1.24920 0.97872 0.95274 0.95567 1.69901 1.15369 1.43008 1.24413 0.86376 0.79261 0.80177 0.80686 1.19886 1.20870 1.19834 1.21457 0.88253 0.91873 0.95320 1.20583 1.03849 0.93102 0.97625 1.22524 0.85785 1.00787 0.92985 0.87488 0.91394 0.91500 0.87516 0.86983 0.89594 0.89300 0.79818 0.92462 0.92530 0.92039 0.89714 0.90757 0.88840 0.89318 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.34 -3.05 10.57 -39.26 -0.41 -3.46 16 3 C 0.46 4.43 7.05 36.00 0.25 4.69 16 4 O -0.48 -5.19 15.45 -18.76 -0.29 -5.48 16 5 C 0.12 1.12 1.58 -89.62 -0.14 0.97 16 6 F -0.17 -1.89 17.01 2.25 0.04 -1.86 16 7 C -0.14 -1.07 5.91 -24.90 -0.15 -1.22 16 8 C 0.10 0.90 4.98 -3.06 -0.02 0.89 16 9 N -0.62 -7.93 3.33 -171.75 -0.57 -8.50 16 10 C 0.63 10.45 7.85 -12.52 -0.10 10.35 16 11 O -0.55 -10.35 15.10 5.27 0.08 -10.27 16 12 C -0.33 -6.00 6.09 -105.07 -0.64 -6.64 16 13 C 0.05 0.78 10.45 -16.98 -0.18 0.60 16 14 N -0.29 -6.24 12.50 30.86 0.39 -5.86 16 15 N -0.31 -6.99 3.56 -57.77 -0.21 -7.19 16 16 C 0.25 6.18 5.97 -5.19 -0.03 6.15 16 17 C -0.54 -14.47 9.39 -34.44 -0.32 -14.79 16 18 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 19 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 21 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.17 3.40 7.01 -81.60 -0.57 2.83 16 26 C -0.09 -1.67 9.57 36.00 0.34 -1.33 16 27 C 0.10 1.10 6.18 -2.50 -0.02 1.08 16 28 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.07 0.35 8.13 -51.93 -0.42 -0.08 16 31 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.11 0.78 7.35 -51.93 -0.38 0.40 16 33 H 0.09 0.81 6.81 -51.93 -0.35 0.46 16 34 H 0.09 0.74 7.01 -51.93 -0.36 0.37 16 35 H 0.19 2.30 4.47 -52.48 -0.23 2.07 16 36 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.06 1.38 7.02 -51.93 -0.36 1.02 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.07 1.29 7.05 -51.93 -0.37 0.92 16 41 H 0.09 1.59 6.50 -51.93 -0.34 1.25 16 42 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 43 H 0.11 1.21 8.04 -51.93 -0.42 0.79 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -32.55 366.92 -5.64 -38.20 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.32 Total: 0.33 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.59 Total: 6.55 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.34 Total: -45.26 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.62 Total: -19.21 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.55 -5.64 -38.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896788631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.836 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds