Wall clock time and date at job start Tue Mar 31 2020 23:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 F 1.39907 * 110.88464 * 54.01558 * 5 3 2 7 7 C 1.55157 * 111.00937 * 177.90205 * 5 3 2 8 8 C 1.54320 * 102.94311 * 153.57638 * 7 5 3 9 9 N 1.47024 * 107.27064 * 337.80540 * 8 7 5 10 10 C 1.34779 * 125.64465 * 178.97692 * 9 8 7 11 11 O 1.21608 * 119.99739 * 179.97438 * 10 9 8 12 12 C 1.47425 * 120.00142 * 359.97438 * 10 9 8 13 13 C 1.41289 * 126.41625 * 359.68020 * 12 10 9 14 14 N 1.30452 * 108.02390 * 179.85846 * 13 12 10 15 15 N 1.39931 * 108.89515 * 0.41213 * 14 13 12 16 16 C 1.46504 * 125.75502 * 179.73552 * 15 14 13 17 17 C 1.50701 * 109.46839 * 270.00122 * 16 15 14 18 18 H 1.08000 * 120.00321 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99490 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00497 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99942 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47270 * 59.99730 * 21 19 17 23 23 H 1.48500 * 109.47226 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47155 * 299.99967 * 21 19 17 25 25 C 1.34263 * 108.49238 * 359.73527 * 15 14 13 26 26 C 1.50698 * 126.28900 * 180.02562 * 25 15 14 27 27 C 1.47468 * 108.72564 * 358.97629 * 9 8 7 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 30 30 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 31 31 H 1.09008 * 110.71518 * 271.93760 * 7 5 3 32 32 H 1.09000 * 110.71975 * 35.03067 * 7 5 3 33 33 H 1.09001 * 109.88222 * 97.22560 * 8 7 5 34 34 H 1.09005 * 109.87739 * 218.23180 * 8 7 5 35 35 H 1.08005 * 125.98800 * 0.02562 * 13 12 10 36 36 H 1.09004 * 109.46485 * 29.99688 * 16 15 14 37 37 H 1.08997 * 109.47085 * 149.99708 * 16 15 14 38 38 H 0.97001 * 120.00133 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.47627 * 269.97342 * 26 25 15 40 40 H 1.08999 * 109.47325 * 29.97917 * 26 25 15 41 41 H 1.09001 * 109.46895 * 149.97578 * 26 25 15 42 42 H 1.08997 * 110.34791 * 265.25927 * 27 9 8 43 43 H 1.08992 * 110.40813 * 142.91442 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 9 4.1001 0.5365 -1.0678 7 6 4.0457 2.7497 -0.0581 8 6 5.4350 2.6853 0.6106 9 7 5.4614 1.4760 1.4464 10 6 6.5087 1.0518 2.1811 11 8 6.4174 0.0325 2.8380 12 6 7.7648 1.8235 2.1885 13 6 8.0208 3.0160 1.4753 14 7 9.2406 3.3928 1.7435 15 7 9.8180 2.4680 2.6206 16 6 11.1802 2.5313 3.1562 17 6 12.1176 1.7968 2.2328 18 1 11.7368 1.3292 1.3368 19 6 13.4614 1.7217 2.5318 20 7 13.9253 2.2915 3.6226 21 14 14.6234 0.8107 1.3876 22 1 14.5897 1.4409 0.0434 23 1 16.0042 0.8749 1.9305 24 1 14.2001 -0.6086 1.2796 25 6 8.9133 1.5129 2.8886 26 6 9.1144 0.3212 3.7888 27 6 4.1526 0.8038 1.3481 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 4.1297 3.0918 -1.0897 32 1 3.3722 3.3943 0.5069 33 1 6.2112 2.6256 -0.1524 34 1 5.5902 3.5696 1.2287 35 1 7.3271 3.5276 0.8244 36 1 11.4910 3.5730 3.2362 37 1 11.2046 2.0681 4.1426 38 1 14.8707 2.2383 3.8332 39 1 9.5030 -0.5135 3.2054 40 1 9.8241 0.5760 4.5758 41 1 8.1614 0.0391 4.2364 42 1 3.5055 1.1121 2.1693 43 1 4.2801 -0.2786 1.3502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896788631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:09 Heat of formation + Delta-G solvation = -99.410867 kcal Electronic energy + Delta-G solvation = -29497.010336 eV Core-core repulsion = 25072.329466 eV Total energy + Delta-G solvation = -4424.680869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.16757 -42.41194 -41.74051 -40.45223 -38.33401 -37.59606 -35.82036 -33.98741 -32.99126 -32.50184 -30.86184 -29.39590 -28.55696 -28.15102 -25.92075 -25.22691 -24.12580 -22.56107 -21.65223 -21.39805 -19.94349 -19.42985 -18.87091 -18.54472 -18.18201 -17.76567 -17.03474 -16.80166 -16.72793 -16.44924 -16.18872 -16.01427 -15.94628 -15.45507 -14.98531 -14.69545 -14.30116 -14.27827 -14.24151 -14.15969 -13.92252 -13.75447 -13.67318 -13.58224 -13.14644 -13.05593 -12.97844 -12.70791 -12.66330 -12.48777 -12.28962 -12.23090 -11.92290 -11.88030 -11.76990 -11.67346 -10.89999 -10.75389 -10.28711 -9.88299 -9.45507 -8.37470 -6.53672 0.62081 0.66804 1.19019 1.30519 1.38923 1.39405 1.47952 1.64029 1.96372 2.32849 2.43065 2.65561 2.92069 2.94814 3.22297 3.57566 3.69988 3.71735 3.82726 4.00584 4.08323 4.20420 4.23660 4.32083 4.37039 4.46020 4.49536 4.59067 4.63131 4.70691 4.74769 4.79828 4.89388 4.92528 5.05637 5.08203 5.13947 5.18723 5.49290 5.64731 5.75117 6.02919 6.30635 6.34574 6.54714 6.81200 7.14444 7.17413 8.70186 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.002335 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.891400 B =11987.179525 C =12027.836415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.468 3.532 4 O -0.494 6.494 5 C 0.117 3.883 6 F -0.179 7.179 7 C -0.126 4.126 8 C 0.084 3.916 9 N -0.616 5.616 10 C 0.624 3.376 11 O -0.576 6.576 12 C -0.328 4.328 13 C 0.068 3.932 14 N -0.334 5.334 15 N -0.336 5.336 16 C 0.267 3.733 17 C -0.556 4.556 18 H 0.051 0.949 19 C 0.024 3.976 20 N -0.916 5.916 21 Si 0.970 3.030 22 H -0.273 1.273 23 H -0.273 1.273 24 H -0.267 1.267 25 C 0.149 3.851 26 C -0.087 4.087 27 C 0.100 3.900 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.231 0.769 36 H 0.033 0.967 37 H 0.051 0.949 38 H 0.274 0.726 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.993 -1.646 -6.818 26.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.308 3.692 4 O -0.381 6.381 5 C 0.096 3.904 6 F -0.159 7.159 7 C -0.164 4.164 8 C -0.038 4.038 9 N -0.350 5.350 10 C 0.416 3.584 11 O -0.457 6.457 12 C -0.344 4.344 13 C -0.118 4.118 14 N -0.153 5.153 15 N -0.113 5.113 16 C 0.148 3.852 17 C -0.594 4.594 18 H 0.070 0.930 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.794 3.206 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.192 1.192 25 C 0.013 3.987 26 C -0.145 4.145 27 C -0.023 4.023 28 H 0.150 0.850 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.247 0.753 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.950 -0.963 -6.499 25.801 hybrid contribution 0.232 -0.944 -0.366 1.039 sum -24.718 -1.907 -6.865 25.725 Atomic orbital electron populations 1.23723 0.73517 1.06257 1.03288 1.86567 1.26018 1.31863 1.82670 1.23333 0.90775 0.82287 0.72842 1.90712 1.66313 1.36549 1.44526 1.21857 0.86037 0.95636 0.86850 1.92977 1.86739 1.78688 1.57489 1.23345 0.96007 0.90926 1.06094 1.22720 0.98062 0.88250 0.94759 1.47971 1.12160 1.27022 1.47864 1.16747 0.81205 0.82868 0.77538 1.90699 1.83381 1.26594 1.44991 1.19747 0.96127 1.04034 1.14461 1.25094 0.93808 0.94410 0.98485 1.77124 1.10795 1.16125 1.11264 1.49144 1.12490 1.16719 1.32959 1.19386 0.72893 0.98416 0.94461 1.21352 0.93259 1.36102 1.08664 0.93024 1.25714 0.99225 0.95858 0.96931 1.69984 1.15930 1.43786 1.25671 0.85421 0.77543 0.79049 0.78612 1.19814 1.19783 1.19221 1.21938 0.88698 0.92058 0.96020 1.20564 1.04237 0.92388 0.97287 1.22650 0.84989 1.00163 0.94498 0.85021 0.90928 0.91205 0.85591 0.85706 0.89097 0.87442 0.75274 0.94904 0.93075 0.91652 0.89866 0.90864 0.87960 0.87578 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.56 113.37 1.20 1.42 16 2 O -0.36 -5.65 10.57 -51.41 -0.54 -6.19 16 3 C 0.47 7.97 7.05 71.23 0.50 8.47 16 4 O -0.49 -9.48 15.45 21.94 0.34 -9.14 16 5 C 0.12 1.97 1.58 -10.15 -0.02 1.95 16 6 F -0.18 -3.72 17.01 44.97 0.76 -2.96 16 7 C -0.13 -1.53 5.91 31.78 0.19 -1.34 16 8 C 0.08 1.31 4.98 86.73 0.43 1.74 16 9 N -0.62 -14.44 3.33 -815.54 -2.71 -17.16 16 10 C 0.62 20.14 7.85 86.66 0.68 20.82 16 11 O -0.58 -21.51 15.10 -4.05 -0.06 -21.58 16 12 C -0.33 -11.68 6.09 -20.15 -0.12 -11.80 16 13 C 0.07 2.23 10.45 85.65 0.89 3.13 16 14 N -0.33 -14.11 12.50 -56.27 -0.70 -14.81 16 15 N -0.34 -15.38 3.56 -336.69 -1.20 -16.58 16 16 C 0.27 13.66 5.97 85.63 0.51 14.17 16 17 C -0.56 -30.44 9.39 25.60 0.24 -30.20 16 18 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 19 C 0.02 1.30 5.46 84.65 0.46 1.77 16 20 N -0.92 -50.98 13.29 21.45 0.28 -50.70 16 21 Si 0.97 42.52 29.54 68.60 2.03 44.54 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 C 0.15 6.08 7.01 42.14 0.30 6.38 16 26 C -0.09 -3.17 9.57 71.24 0.68 -2.48 16 27 C 0.10 1.95 6.18 86.85 0.54 2.49 16 28 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 30 H 0.07 0.59 8.13 -2.38 -0.02 0.57 16 31 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.12 1.27 7.35 -2.39 -0.02 1.25 16 33 H 0.09 1.38 6.81 -2.39 -0.02 1.37 16 34 H 0.11 1.34 7.01 -2.38 -0.02 1.33 16 35 H 0.23 4.96 4.47 -2.91 -0.01 4.95 16 36 H 0.03 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.05 2.62 7.02 -2.39 -0.02 2.60 16 38 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.07 2.63 7.05 -2.39 -0.02 2.61 16 41 H 0.10 3.51 6.50 -2.39 -0.02 3.50 16 42 H 0.11 1.72 8.03 -2.39 -0.02 1.70 16 43 H 0.09 2.08 8.04 -2.39 -0.02 2.06 16 Total: -1.00 -71.11 366.92 5.74 -65.38 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.06 Total: 12.68 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.48 Total: 16.51 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -4.33 Total: -99.24 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.27 Total: -36.91 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.76 Total: -2.96 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -71.11 5.74 -65.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896788631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.034 kcal (2) G-P(sol) polarization free energy of solvation -71.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds