Wall clock time and date at job start Tue Mar 31 2020 22:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99721 * 2 1 4 4 H 1.48507 * 109.46740 * 269.99485 * 3 2 1 5 5 H 1.48501 * 109.47284 * 29.99364 * 3 2 1 6 6 H 1.48494 * 109.47062 * 149.99978 * 3 2 1 7 7 C 1.37873 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99671 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99997 * 180.02562 * 7 2 1 10 10 N 1.46509 * 109.46947 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99967 * 274.99965 * 10 9 7 12 12 C 1.52993 * 109.47200 * 275.00238 * 11 10 9 13 13 C 1.53006 * 117.49641 * 243.74771 * 12 11 10 14 14 C 1.53003 * 117.49837 * 175.09086 * 12 11 10 15 15 S 1.65603 * 119.99760 * 94.99973 * 10 9 7 16 16 O 1.42095 * 106.40267 * 336.45875 * 15 10 9 17 17 O 1.42102 * 106.39962 * 203.53925 * 15 10 9 18 18 C 1.76197 * 107.21377 * 90.00004 * 15 10 9 19 19 C 1.34850 * 126.66047 * 329.97329 * 18 15 10 20 20 N 1.34296 * 108.07597 * 179.97438 * 19 18 15 21 21 C 1.30096 * 109.20906 * 359.95893 * 20 19 18 22 22 N 1.35424 * 108.62729 * 0.08309 * 21 20 19 23 23 C 1.46473 * 124.82195 * 179.84176 * 22 21 20 24 24 C 1.53257 * 108.79578 * 342.89492 * 23 22 21 25 25 C 1.53313 * 109.48575 * 50.41068 * 24 23 22 26 26 C 1.51039 * 127.38988 * 180.10499 * 21 20 19 27 27 H 0.97001 * 120.00220 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47044 * 60.00408 * 9 7 2 29 29 H 1.09002 * 109.47112 * 300.00316 * 9 7 2 30 30 H 1.09005 * 109.47103 * 35.00252 * 11 10 9 31 31 H 1.08997 * 109.46774 * 154.99699 * 11 10 9 32 32 H 1.09001 * 115.55297 * 29.41706 * 12 11 10 33 33 H 1.09000 * 117.50108 * 359.97438 * 13 12 11 34 34 H 1.09000 * 117.49331 * 145.02123 * 13 12 11 35 35 H 1.09010 * 117.49649 * 214.97893 * 14 12 11 36 36 H 1.09000 * 117.49922 * 359.97438 * 14 12 11 37 37 H 1.08003 * 125.96327 * 359.97438 * 19 18 15 38 38 H 1.09004 * 109.57965 * 102.69412 * 23 22 21 39 39 H 1.08997 * 109.57979 * 223.10022 * 23 22 21 40 40 H 1.09007 * 109.46446 * 170.38174 * 24 23 22 41 41 H 1.09001 * 109.47000 * 290.36876 * 24 23 22 42 42 H 1.09000 * 109.54846 * 170.58176 * 25 24 23 43 43 H 1.08992 * 109.54175 * 50.39293 * 25 24 23 44 44 H 1.09002 * 109.71592 * 283.72226 * 26 21 20 45 45 H 1.09001 * 109.71479 * 44.32127 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.1394 -3.3029 1.2648 12 6 5.4959 -2.9783 1.8932 13 6 6.4945 -4.1268 2.0508 14 6 5.7873 -3.5528 3.2810 15 16 4.3943 -3.3138 -1.4278 16 8 3.6694 -2.6349 -2.4439 17 8 4.2878 -4.7123 -1.1992 18 6 6.0992 -2.9875 -1.7302 19 6 6.7916 -1.8975 -1.3419 20 7 8.0577 -2.0343 -1.7682 21 6 8.1759 -3.1638 -2.4028 22 7 6.9743 -3.7882 -2.4021 23 6 6.7063 -5.0872 -3.0237 24 6 7.8364 -5.4058 -4.0087 25 6 9.1894 -5.2210 -3.3118 26 6 9.4199 -3.7275 -3.0478 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8912 29 1 3.8752 -0.6802 -0.8888 30 1 3.3425 -3.0041 1.9459 31 1 4.0733 -4.3744 1.0761 32 1 5.8966 -1.9911 1.6630 33 1 6.1848 -5.1137 1.7071 34 1 7.5521 -3.8950 1.9245 35 1 6.3799 -2.9437 3.9637 36 1 5.0122 -4.1618 3.7465 37 1 6.3968 -1.0604 -0.7851 38 1 6.6636 -5.8584 -2.2545 39 1 5.7567 -5.0478 -3.5573 40 1 7.7414 -6.4369 -4.3492 41 1 7.7729 -4.7334 -4.8642 42 1 9.9844 -5.6046 -3.9513 43 1 9.1892 -5.7621 -2.3657 44 1 9.6114 -3.2129 -3.9894 45 1 10.2711 -3.5995 -2.3791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906920238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:06 Heat of formation + Delta-G solvation = -11.426752 kcal Electronic energy + Delta-G solvation = -29044.238064 eV Core-core repulsion = 25189.585648 eV Total energy + Delta-G solvation = -3854.652416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.50104 -39.00128 -38.43312 -37.63915 -37.05511 -36.53973 -34.47570 -34.37212 -31.03982 -30.27582 -29.84372 -27.21423 -25.47991 -24.11741 -23.58225 -23.17493 -23.06352 -21.61472 -20.35612 -19.87714 -19.18243 -18.80911 -18.38723 -17.62471 -17.06957 -16.76270 -16.30508 -16.05472 -15.67555 -15.52920 -15.46088 -15.19688 -15.14614 -14.84035 -14.50794 -14.19238 -13.93994 -13.63591 -13.46126 -13.35124 -13.08750 -13.04618 -13.00228 -12.96127 -12.52407 -12.33958 -12.24502 -12.15309 -12.05194 -12.03770 -11.89642 -11.70552 -11.28417 -11.26183 -10.85349 -10.81504 -10.76198 -9.97393 -9.84976 -8.27656 -6.33342 -0.79543 0.35682 1.38480 1.42188 1.47667 1.50097 1.77207 1.91695 2.36449 2.57043 2.92253 3.06419 3.15279 3.40250 3.44327 3.62959 3.64714 3.79792 3.89287 4.01624 4.06077 4.18986 4.21607 4.26963 4.29225 4.36830 4.42606 4.73954 4.75565 4.79353 4.79732 4.81590 4.85992 4.95243 5.01025 5.03803 5.05903 5.23053 5.24941 5.27671 5.31879 5.36200 5.47112 5.67231 5.95476 6.29556 6.68727 6.69432 7.29328 8.89476 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.004526 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.248880 B = 6184.648776 C = 6747.224364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.013 3.987 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.225 1.225 7 C -0.540 4.540 8 H 0.034 0.966 9 C 0.230 3.770 10 N -0.969 5.969 11 C 0.149 3.851 12 C -0.188 4.188 13 C -0.179 4.179 14 C -0.155 4.155 15 S 2.721 3.279 16 O -0.983 6.983 17 O -0.978 6.978 18 C -0.602 4.602 19 C 0.086 3.914 20 N -0.519 5.519 21 C 0.249 3.751 22 N -0.407 5.407 23 C 0.069 3.931 24 C -0.130 4.130 25 C -0.120 4.120 26 C -0.040 4.040 27 H 0.268 0.732 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.185 0.815 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.079 0.921 42 H 0.121 0.879 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.507 -11.467 -2.323 26.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.755 3.245 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.148 1.148 7 C -0.580 4.580 8 H 0.052 0.948 9 C 0.106 3.894 10 N -0.807 5.807 11 C 0.024 3.976 12 C -0.208 4.208 13 C -0.216 4.216 14 C -0.192 4.192 15 S 2.809 3.191 16 O -0.972 6.972 17 O -0.968 6.968 18 C -0.799 4.799 19 C -0.069 4.069 20 N -0.238 5.238 21 C -0.016 4.016 22 N -0.087 5.087 23 C -0.051 4.051 24 C -0.167 4.167 25 C -0.158 4.158 26 C -0.079 4.079 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.202 0.798 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.143 0.857 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 23.381 -11.474 -2.819 26.196 hybrid contribution -0.987 0.833 0.013 1.291 sum 22.394 -10.642 -2.806 24.952 Atomic orbital electron populations 1.70049 1.08327 1.28283 1.51909 1.25816 0.95611 1.03234 0.93830 0.85940 0.80644 0.78539 0.79411 1.19721 1.20348 1.14754 1.21609 0.91667 0.93525 1.51158 0.94782 1.19386 0.93076 0.78293 0.98694 1.56906 1.77737 1.25291 1.20814 1.21024 0.96704 0.95770 0.84151 1.22804 0.96684 0.99319 1.02007 1.23064 0.97809 0.97509 1.03228 1.23016 1.03072 1.03123 0.89995 1.00916 0.72569 0.72730 0.72902 1.93588 1.69943 1.75715 1.57981 1.93465 1.86797 1.30872 1.85630 1.33382 1.21617 1.05018 1.19920 1.22516 0.89655 0.96274 0.98457 1.70141 1.18900 1.18038 1.16740 1.24808 0.89449 0.89321 0.98002 1.45169 1.07735 1.16918 1.38881 1.22710 1.02215 0.81558 0.98648 1.22056 0.92353 1.05592 0.96742 1.21779 0.97681 0.93755 1.02557 1.20679 0.89401 0.96378 1.01422 0.92320 0.91676 0.94774 0.89216 0.89592 0.87382 0.88946 0.88686 0.87270 0.87785 0.79783 0.87507 0.90254 0.85711 0.90233 0.86058 0.90749 0.87119 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.93 42.67 27.47 68.60 1.88 44.56 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.23 -8.87 6.54 99.48 0.65 -8.22 16 7 C -0.54 -31.10 9.94 25.60 0.25 -30.85 16 8 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16 9 C 0.23 10.51 4.17 85.63 0.36 10.87 16 10 N -0.97 -39.13 2.72 -519.84 -1.41 -40.54 16 11 C 0.15 5.03 5.96 86.38 0.51 5.55 16 12 C -0.19 -5.14 6.01 -10.79 -0.06 -5.20 16 13 C -0.18 -4.19 10.18 30.62 0.31 -3.88 16 14 C -0.15 -3.31 10.25 30.62 0.31 -3.00 16 15 S 2.72 111.31 5.64 -56.49 -0.32 110.99 16 16 O -0.98 -49.14 16.99 -128.00 -2.17 -51.31 16 17 O -0.98 -39.44 15.85 -128.00 -2.03 -41.47 16 18 C -0.60 -20.72 6.94 83.22 0.58 -20.14 16 19 C 0.09 2.88 11.77 83.54 0.98 3.86 16 20 N -0.52 -16.18 11.24 -187.51 -2.11 -18.29 16 21 C 0.25 6.37 7.65 138.23 1.06 7.43 16 22 N -0.41 -11.51 3.13 -510.77 -1.60 -13.11 16 23 C 0.07 1.50 6.13 86.47 0.53 2.03 16 24 C -0.13 -1.49 5.94 30.79 0.18 -1.30 16 25 C -0.12 -1.02 5.97 30.83 0.18 -0.84 16 26 C -0.04 -0.55 6.33 30.09 0.19 -0.36 16 27 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 28 H 0.07 2.67 7.17 -2.39 -0.02 2.65 16 29 H 0.03 1.56 7.04 -2.39 -0.02 1.55 16 30 H 0.09 3.15 8.11 -2.38 -0.02 3.13 16 31 H 0.09 2.82 6.65 -2.39 -0.02 2.81 16 32 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.09 2.18 8.03 -2.39 -0.02 2.16 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.19 5.69 8.06 -2.91 -0.02 5.66 16 38 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.08 0.93 8.12 -2.39 -0.02 0.91 16 42 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -80.90 379.53 -0.68 -81.58 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.93 Total: 21.45 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 5.85 Total: -34.60 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -4.82 Total: -131.20 kcal Atomic # 8 Polarization: -88.57 SS G_CDS: -4.20 Total: -92.78 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.56 kcal Atomic # 16 Polarization: 111.31 SS G_CDS: -0.32 Total: 110.99 kcal Total: -80.90 -0.68 -81.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906920238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.150 kcal (2) G-P(sol) polarization free energy of solvation -80.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds