Wall clock time and date at job start Tue Mar 31 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48508 * 109.47031 * 274.98526 * 3 2 1 5 5 H 1.48499 * 109.47234 * 34.98370 * 3 2 1 6 6 H 1.48499 * 109.47490 * 154.98983 * 3 2 1 7 7 C 1.37877 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00260 * 189.57736 * 7 2 1 9 9 C 1.50697 * 119.99819 * 9.57985 * 7 2 1 10 10 C 1.53033 * 109.46045 * 185.44656 * 9 7 2 11 11 C 1.53201 * 109.31164 * 178.62876 * 10 9 7 12 12 N 1.46929 * 108.77339 * 54.64129 * 11 10 9 13 13 S 1.65600 * 120.62873 * 126.36975 * 12 11 10 14 14 O 1.42100 * 106.40335 * 336.45419 * 13 12 11 15 15 O 1.42105 * 106.39581 * 203.53705 * 13 12 11 16 16 C 1.76200 * 107.21914 * 89.99720 * 13 12 11 17 17 C 1.34850 * 126.65558 * 269.95548 * 16 13 12 18 18 N 1.34294 * 108.07291 * 180.02562 * 17 16 13 19 19 C 1.30086 * 109.21011 * 359.97438 * 18 17 16 20 20 N 1.35424 * 108.63176 * 0.04339 * 19 18 17 21 21 C 1.46476 * 124.82579 * 179.97438 * 20 19 18 22 22 C 1.53258 * 108.79741 * 342.90108 * 21 20 19 23 23 C 1.53129 * 109.50985 * 50.34520 * 22 21 20 24 24 C 1.51038 * 127.39000 * 180.08394 * 19 18 17 25 25 C 1.46918 * 118.73721 * 306.63755 * 12 11 10 26 26 C 1.52763 * 109.00697 * 53.31335 * 25 12 11 27 27 H 0.97001 * 120.00000 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46233 * 305.42775 * 9 7 2 29 29 H 1.09004 * 109.49749 * 58.68394 * 10 9 7 30 30 H 1.09003 * 109.52950 * 298.59751 * 10 9 7 31 31 H 1.08991 * 109.58868 * 294.84923 * 11 10 9 32 32 H 1.09004 * 109.70082 * 174.49641 * 11 10 9 33 33 H 1.08008 * 125.96185 * 359.97438 * 17 16 13 34 34 H 1.09001 * 109.57894 * 102.69974 * 21 20 19 35 35 H 1.08998 * 109.58207 * 223.10796 * 21 20 19 36 36 H 1.09000 * 109.46364 * 170.35866 * 22 21 20 37 37 H 1.08999 * 109.46849 * 290.33944 * 22 21 20 38 38 H 1.09006 * 109.51254 * 170.59073 * 23 22 21 39 39 H 1.08997 * 109.54274 * 50.48353 * 23 22 21 40 40 H 1.09001 * 109.71949 * 283.64824 * 24 19 18 41 41 H 1.09011 * 109.71693 * 44.24360 * 24 19 18 42 42 H 1.09000 * 109.58768 * 173.14689 * 25 12 11 43 43 H 1.09001 * 109.59253 * 293.57614 * 25 12 11 44 44 H 1.09004 * 109.56681 * 185.55507 * 26 25 12 45 45 H 1.09000 * 109.38703 * 65.51714 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1073 -1.3949 5 1 1.5032 2.6200 0.8027 6 1 3.5954 1.4122 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1561 9 6 1.2670 -2.4901 -0.2161 10 6 2.2330 -3.6630 -0.0345 11 6 1.4722 -4.9796 -0.2216 12 7 0.7940 -4.9527 -1.5248 13 16 1.0203 -6.1748 -2.6190 14 8 2.2685 -6.7739 -2.2991 15 8 0.7253 -5.6285 -3.8973 16 6 -0.2122 -7.3935 -2.3022 17 6 -0.1072 -8.4465 -1.4664 18 7 -1.2618 -9.1309 -1.5114 19 6 -2.0752 -8.5440 -2.3397 20 7 -1.4567 -7.4551 -2.8551 21 6 -2.0532 -6.5363 -3.8275 22 6 -3.2652 -7.2179 -4.4719 23 6 -4.1776 -7.7796 -3.3780 24 6 -3.4805 -8.9656 -2.6987 25 6 -0.0840 -3.8179 -1.8408 26 6 0.6897 -2.5172 -1.6333 27 1 -0.4850 0.8401 -0.0004 28 1 0.4562 -2.5719 0.5078 29 1 2.6614 -3.6298 0.9673 30 1 3.0310 -3.5957 -0.7739 31 1 0.7339 -5.0910 0.5724 32 1 2.1711 -5.8155 -0.1906 33 1 0.7553 -8.6963 -0.8662 34 1 -2.3725 -5.6254 -3.3212 35 1 -1.3201 -6.2916 -4.5962 36 1 -3.8171 -6.4903 -5.0671 37 1 -2.9260 -8.0303 -5.1145 38 1 -5.1151 -8.1144 -3.8221 39 1 -4.3812 -7.0044 -2.6393 40 1 -3.4467 -9.8143 -3.3818 41 1 -4.0236 -9.2425 -1.7950 42 1 -0.4099 -3.8860 -2.8787 43 1 -0.9519 -3.8326 -1.1815 44 1 0.0198 -1.6682 -1.7695 45 1 1.5018 -2.4598 -2.3581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907107818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:55 Heat of formation + Delta-G solvation = -27.854842 kcal Electronic energy + Delta-G solvation = -28709.979938 eV Core-core repulsion = 24854.615146 eV Total energy + Delta-G solvation = -3855.364791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.54911 -37.82167 -37.36871 -36.79362 -35.77671 -33.57570 -33.43798 -30.92480 -30.25632 -30.20168 -28.94069 -25.78819 -24.74677 -22.79867 -22.62485 -22.38049 -22.04325 -19.74687 -19.48514 -18.62783 -17.65873 -17.31814 -16.37916 -16.15701 -15.76274 -15.61325 -14.87195 -14.76505 -14.55017 -14.54188 -14.18651 -13.96215 -13.60391 -13.17923 -13.13228 -12.91580 -12.84796 -12.33208 -12.16722 -12.11795 -12.00943 -11.94409 -11.56568 -11.53087 -11.47281 -11.15257 -10.99594 -10.92070 -10.67702 -10.40775 -10.27866 -10.18472 -9.88118 -9.65231 -9.17026 -9.06360 -8.93298 -8.42802 -8.35093 -6.06434 -4.07434 0.42511 1.34705 2.44422 2.74820 3.18175 3.28707 3.36407 3.39762 3.80881 3.90555 4.14568 4.21807 4.31952 4.40664 4.41839 4.81657 4.91662 5.01729 5.10217 5.15333 5.20585 5.25662 5.29091 5.36656 5.40511 5.51748 5.68394 5.70504 5.82490 5.90697 5.96825 6.05222 6.20633 6.35255 6.37472 6.39050 6.64904 6.82365 6.86688 7.02294 7.11197 7.30843 7.65686 7.68593 7.89463 7.95834 8.39759 8.96430 9.56407 11.02397 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.003390 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.047055 B = 8257.979790 C = 8921.992256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.120 4.120 11 C 0.118 3.882 12 N -0.983 5.983 13 S 2.713 3.287 14 O -0.948 6.948 15 O -0.960 6.960 16 C -0.595 4.595 17 C 0.095 3.905 18 N -0.497 5.497 19 C 0.245 3.755 20 N -0.400 5.400 21 C 0.076 3.924 22 C -0.134 4.134 23 C -0.129 4.129 24 C -0.038 4.038 25 C 0.118 3.882 26 C -0.114 4.114 27 H 0.260 0.740 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.185 0.815 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.078 -15.697 -7.227 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.824 5.824 13 S 2.799 3.201 14 O -0.937 6.937 15 O -0.950 6.950 16 C -0.790 4.790 17 C -0.061 4.061 18 N -0.216 5.216 19 C -0.020 4.020 20 N -0.080 5.080 21 C -0.045 4.045 22 C -0.172 4.172 23 C -0.167 4.167 24 C -0.077 4.077 25 C -0.006 4.006 26 C -0.154 4.154 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.202 0.798 34 H 0.113 0.887 35 H 0.137 0.863 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.876 -16.217 -7.562 19.974 hybrid contribution 0.107 1.387 0.002 1.392 sum -8.769 -14.830 -7.559 18.814 Atomic orbital electron populations 1.69950 1.05902 1.26510 1.50440 1.24948 0.94772 0.99028 0.95007 0.86670 0.80110 0.83789 0.77985 1.20733 1.21386 1.19894 1.21187 0.94188 0.90926 1.48963 0.92591 1.18624 0.94178 0.91719 0.92553 1.21966 0.98964 0.93963 1.00994 1.21636 0.95742 1.00461 0.82824 1.57557 1.59912 1.33687 1.31247 1.01503 0.73156 0.72123 0.73338 1.93581 1.37584 1.77926 1.84644 1.93512 1.85493 1.77722 1.38320 1.33982 1.05199 1.23675 1.16164 1.22431 0.96680 0.90438 0.96520 1.70152 1.02302 1.29425 1.19681 1.23847 0.97180 0.86779 0.94203 1.45002 1.09749 1.21450 1.31758 1.22561 0.97528 0.92222 0.92239 1.21921 0.95128 1.01695 0.98454 1.21737 0.98918 0.97817 0.98245 1.20344 0.86273 0.98728 1.02376 1.21633 0.92624 0.86849 0.99516 1.21829 0.99287 0.93875 1.00375 0.93058 0.94673 0.91763 0.92689 0.91843 0.90147 0.79763 0.88656 0.86325 0.88550 0.90434 0.89544 0.90663 0.88737 0.88160 0.90867 0.92149 0.89572 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 12.16 55.43 0.67 -23.73 16 2 C 0.06 1.71 5.19 -17.82 -0.09 1.62 16 3 Si 0.89 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.56 8.48 -34.44 -0.29 -13.85 16 8 H 0.06 1.47 7.77 -52.49 -0.41 1.07 16 9 C 0.05 1.11 1.93 -91.73 -0.18 0.94 16 10 C -0.12 -2.35 5.30 -26.61 -0.14 -2.49 16 11 C 0.12 1.96 6.48 -3.70 -0.02 1.93 16 12 N -0.98 -16.41 3.30 -113.76 -0.37 -16.79 16 13 S 2.71 43.59 5.84 -107.50 -0.63 42.97 16 14 O -0.95 -16.92 16.46 -57.17 -0.94 -17.86 16 15 O -0.96 -16.50 14.41 -57.17 -0.82 -17.32 16 16 C -0.59 -8.74 7.04 -16.76 -0.12 -8.86 16 17 C 0.10 1.39 11.65 -17.68 -0.21 1.18 16 18 N -0.50 -7.31 11.24 -10.62 -0.12 -7.43 16 19 C 0.24 3.07 7.65 -155.24 -1.19 1.88 16 20 N -0.40 -5.19 3.13 -112.80 -0.35 -5.55 16 21 C 0.08 0.78 6.39 -3.92 -0.03 0.76 16 22 C -0.13 -0.91 5.94 -26.53 -0.16 -1.07 16 23 C -0.13 -0.79 5.96 -26.45 -0.16 -0.95 16 24 C -0.04 -0.30 6.33 -27.50 -0.17 -0.48 16 25 C 0.12 2.07 6.45 -3.94 -0.03 2.04 16 26 C -0.11 -2.47 5.19 -26.83 -0.14 -2.61 16 27 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.20 6.92 -51.93 -0.36 0.84 16 33 H 0.19 2.29 8.06 -52.48 -0.42 1.86 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.12 1.33 6.52 -51.93 -0.34 0.99 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.07 1.16 6.91 -51.93 -0.36 0.80 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.09 2.05 6.87 -51.93 -0.36 1.69 16 45 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -32.53 364.47 -11.88 -44.41 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.87 Total: 0.01 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -2.92 Total: -19.94 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.17 Total: -53.50 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -1.76 Total: -35.18 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 43.59 SS G_CDS: -0.63 Total: 42.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.53 -11.88 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907107818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.553 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds