Wall clock time and date at job start Tue Mar 31 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48508 * 109.47031 * 274.98526 * 3 2 1 5 5 H 1.48499 * 109.47234 * 34.98370 * 3 2 1 6 6 H 1.48499 * 109.47490 * 154.98983 * 3 2 1 7 7 C 1.37877 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00260 * 189.57736 * 7 2 1 9 9 C 1.50697 * 119.99819 * 9.57985 * 7 2 1 10 10 C 1.53033 * 109.46045 * 185.44656 * 9 7 2 11 11 C 1.53201 * 109.31164 * 178.62876 * 10 9 7 12 12 N 1.46929 * 108.77339 * 54.64129 * 11 10 9 13 13 S 1.65600 * 120.62873 * 126.36975 * 12 11 10 14 14 O 1.42100 * 106.40335 * 336.45419 * 13 12 11 15 15 O 1.42105 * 106.39581 * 203.53705 * 13 12 11 16 16 C 1.76200 * 107.21914 * 89.99720 * 13 12 11 17 17 C 1.34850 * 126.65558 * 269.95548 * 16 13 12 18 18 N 1.34294 * 108.07291 * 180.02562 * 17 16 13 19 19 C 1.30086 * 109.21011 * 359.97438 * 18 17 16 20 20 N 1.35424 * 108.63176 * 0.04339 * 19 18 17 21 21 C 1.46476 * 124.82579 * 179.97438 * 20 19 18 22 22 C 1.53258 * 108.79741 * 342.90108 * 21 20 19 23 23 C 1.53129 * 109.50985 * 50.34520 * 22 21 20 24 24 C 1.51038 * 127.39000 * 180.08394 * 19 18 17 25 25 C 1.46918 * 118.73721 * 306.63755 * 12 11 10 26 26 C 1.52763 * 109.00697 * 53.31335 * 25 12 11 27 27 H 0.97001 * 120.00000 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46233 * 305.42775 * 9 7 2 29 29 H 1.09004 * 109.49749 * 58.68394 * 10 9 7 30 30 H 1.09003 * 109.52950 * 298.59751 * 10 9 7 31 31 H 1.08991 * 109.58868 * 294.84923 * 11 10 9 32 32 H 1.09004 * 109.70082 * 174.49641 * 11 10 9 33 33 H 1.08008 * 125.96185 * 359.97438 * 17 16 13 34 34 H 1.09001 * 109.57894 * 102.69974 * 21 20 19 35 35 H 1.08998 * 109.58207 * 223.10796 * 21 20 19 36 36 H 1.09000 * 109.46364 * 170.35866 * 22 21 20 37 37 H 1.08999 * 109.46849 * 290.33944 * 22 21 20 38 38 H 1.09006 * 109.51254 * 170.59073 * 23 22 21 39 39 H 1.08997 * 109.54274 * 50.48353 * 23 22 21 40 40 H 1.09001 * 109.71949 * 283.64824 * 24 19 18 41 41 H 1.09011 * 109.71693 * 44.24360 * 24 19 18 42 42 H 1.09000 * 109.58768 * 173.14689 * 25 12 11 43 43 H 1.09001 * 109.59253 * 293.57614 * 25 12 11 44 44 H 1.09004 * 109.56681 * 185.55507 * 26 25 12 45 45 H 1.09000 * 109.38703 * 65.51714 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1073 -1.3949 5 1 1.5032 2.6200 0.8027 6 1 3.5954 1.4122 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1561 9 6 1.2670 -2.4901 -0.2161 10 6 2.2330 -3.6630 -0.0345 11 6 1.4722 -4.9796 -0.2216 12 7 0.7940 -4.9527 -1.5248 13 16 1.0203 -6.1748 -2.6190 14 8 2.2685 -6.7739 -2.2991 15 8 0.7253 -5.6285 -3.8973 16 6 -0.2122 -7.3935 -2.3022 17 6 -0.1072 -8.4465 -1.4664 18 7 -1.2618 -9.1309 -1.5114 19 6 -2.0752 -8.5440 -2.3397 20 7 -1.4567 -7.4551 -2.8551 21 6 -2.0532 -6.5363 -3.8275 22 6 -3.2652 -7.2179 -4.4719 23 6 -4.1776 -7.7796 -3.3780 24 6 -3.4805 -8.9656 -2.6987 25 6 -0.0840 -3.8179 -1.8408 26 6 0.6897 -2.5172 -1.6333 27 1 -0.4850 0.8401 -0.0004 28 1 0.4562 -2.5719 0.5078 29 1 2.6614 -3.6298 0.9673 30 1 3.0310 -3.5957 -0.7739 31 1 0.7339 -5.0910 0.5724 32 1 2.1711 -5.8155 -0.1906 33 1 0.7553 -8.6963 -0.8662 34 1 -2.3725 -5.6254 -3.3212 35 1 -1.3201 -6.2916 -4.5962 36 1 -3.8171 -6.4903 -5.0671 37 1 -2.9260 -8.0303 -5.1145 38 1 -5.1151 -8.1144 -3.8221 39 1 -4.3812 -7.0044 -2.6393 40 1 -3.4467 -9.8143 -3.3818 41 1 -4.0236 -9.2425 -1.7950 42 1 -0.4099 -3.8860 -2.8787 43 1 -0.9519 -3.8326 -1.1815 44 1 0.0198 -1.6682 -1.7695 45 1 1.5018 -2.4598 -2.3581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907107818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:55 Heat of formation + Delta-G solvation = -48.249899 kcal Electronic energy + Delta-G solvation = -28710.864334 eV Core-core repulsion = 24854.615146 eV Total energy + Delta-G solvation = -3856.249187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.51493 -39.37473 -38.63225 -37.56456 -37.12538 -35.28586 -34.40830 -32.69856 -31.81506 -31.02501 -29.82339 -27.64382 -25.46857 -24.26916 -24.03485 -23.57409 -23.01541 -21.21848 -20.45447 -19.76200 -19.03428 -18.57071 -18.21083 -17.17572 -17.00665 -16.74087 -16.48465 -15.66821 -15.55366 -15.40518 -15.17703 -15.12235 -14.89814 -14.78574 -14.49426 -14.46403 -13.94929 -13.74975 -13.61085 -13.36102 -13.09089 -13.03660 -12.97731 -12.79169 -12.65915 -12.47546 -12.13168 -12.09905 -12.05749 -11.94220 -11.86102 -11.47187 -11.29537 -10.92149 -10.84768 -10.83372 -10.38748 -10.04290 -9.85127 -8.10878 -6.17698 -0.85706 0.29640 1.40935 1.43971 1.52420 1.53792 1.71219 1.93877 2.45249 2.55524 3.10538 3.17883 3.19407 3.49683 3.63935 3.72694 3.74353 4.06511 4.19945 4.21921 4.28163 4.35563 4.40645 4.42003 4.45386 4.63284 4.70278 4.75902 4.76469 4.79547 4.88388 4.89374 5.03754 5.05298 5.06778 5.23802 5.26254 5.29138 5.35435 5.52428 5.56736 5.70308 5.93482 6.01541 6.05579 6.41227 6.67957 6.93085 7.48598 8.96884 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.003390 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.047055 B = 8257.979790 C = 8921.992256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.117 4.117 11 C 0.120 3.880 12 N -0.987 5.987 13 S 2.732 3.268 14 O -0.967 6.967 15 O -0.974 6.974 16 C -0.610 4.610 17 C 0.088 3.912 18 N -0.525 5.525 19 C 0.248 3.752 20 N -0.404 5.404 21 C 0.062 3.938 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.041 4.041 25 C 0.128 3.872 26 C -0.109 4.109 27 H 0.261 0.739 28 H 0.011 0.989 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.198 0.802 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 -16.880 -7.949 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.769 3.231 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.026 3.974 10 C -0.156 4.156 11 C -0.004 4.004 12 N -0.827 5.827 13 S 2.821 3.179 14 O -0.957 6.957 15 O -0.965 6.965 16 C -0.808 4.808 17 C -0.069 4.069 18 N -0.244 5.244 19 C -0.017 4.017 20 N -0.084 5.084 21 C -0.058 4.058 22 C -0.167 4.167 23 C -0.161 4.161 24 C -0.079 4.079 25 C 0.004 3.996 26 C -0.148 4.148 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.214 0.786 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.255 -17.372 -8.295 21.811 hybrid contribution 0.518 1.706 0.227 1.797 sum -9.736 -15.666 -8.068 20.132 Atomic orbital electron populations 1.70043 1.06929 1.27137 1.51124 1.25607 0.95540 1.01877 0.94897 0.85779 0.79020 0.80302 0.77957 1.20431 1.21030 1.19583 1.21565 0.94149 0.92669 1.48908 0.93287 1.18589 0.93963 0.92105 0.92729 1.21867 0.98263 0.94335 1.01116 1.21635 0.96260 0.99229 0.83288 1.57509 1.59901 1.33991 1.31302 1.00663 0.72832 0.71793 0.72599 1.93551 1.39079 1.78204 1.84831 1.93490 1.85729 1.78203 1.39037 1.33520 1.06117 1.23518 1.17599 1.22786 0.97292 0.90348 0.96443 1.70180 1.02752 1.30350 1.21109 1.24776 0.98422 0.85831 0.92682 1.45243 1.09168 1.21973 1.31977 1.22861 0.98637 0.92654 0.91675 1.21985 0.93834 1.02219 0.98671 1.21758 0.99692 0.96871 0.97794 1.20659 0.83660 1.00097 1.03495 1.21433 0.92173 0.85127 1.00885 1.21638 0.98760 0.95397 0.99050 0.93036 0.97128 0.91240 0.93448 0.90434 0.88110 0.78555 0.88236 0.87554 0.86200 0.90032 0.86422 0.91206 0.86897 0.87111 0.89063 0.91356 0.92159 0.94774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.96 12.16 21.45 0.26 -50.70 16 2 C 0.02 1.08 5.19 84.65 0.44 1.52 16 3 Si 0.94 42.99 29.55 68.60 2.03 45.02 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.53 -28.76 8.48 25.60 0.22 -28.54 16 8 H 0.05 2.63 7.77 -2.91 -0.02 2.61 16 9 C 0.04 2.13 1.93 -11.51 -0.02 2.11 16 10 C -0.12 -4.60 5.30 30.67 0.16 -4.44 16 11 C 0.12 3.89 6.48 86.36 0.56 4.45 16 12 N -0.99 -32.34 3.30 -513.84 -1.69 -34.03 16 13 S 2.73 86.05 5.84 -56.49 -0.33 85.72 16 14 O -0.97 -33.90 16.46 -128.00 -2.11 -36.00 16 15 O -0.97 -32.97 14.41 -128.00 -1.84 -34.82 16 16 C -0.61 -17.34 7.04 83.22 0.59 -16.76 16 17 C 0.09 2.48 11.65 83.54 0.97 3.46 16 18 N -0.52 -14.77 11.24 -187.51 -2.11 -16.88 16 19 C 0.25 5.76 7.65 138.23 1.06 6.82 16 20 N -0.40 -9.91 3.13 -510.78 -1.60 -11.51 16 21 C 0.06 1.18 6.39 86.47 0.55 1.74 16 22 C -0.13 -1.37 5.94 30.72 0.18 -1.18 16 23 C -0.12 -1.06 5.96 30.78 0.18 -0.88 16 24 C -0.04 -0.51 6.33 30.10 0.19 -0.32 16 25 C 0.13 4.47 6.45 86.22 0.56 5.02 16 26 C -0.11 -4.81 5.19 30.53 0.16 -4.65 16 27 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 28 H 0.01 0.55 8.09 -2.39 -0.02 0.53 16 29 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.10 2.87 6.92 -2.38 -0.02 2.86 16 33 H 0.20 4.72 8.06 -2.91 -0.02 4.70 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 35 H 0.11 2.28 6.52 -2.39 -0.02 2.26 16 36 H 0.12 0.72 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 38 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 39 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.09 2.83 6.91 -2.39 -0.02 2.82 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 2.96 6.87 -2.38 -0.02 2.94 16 45 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -70.62 364.47 -0.61 -71.24 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.99 Total: 13.63 kcal Atomic # 6 Polarization: -37.45 SS G_CDS: 5.80 Total: -31.66 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -5.14 Total: -113.12 kcal Atomic # 8 Polarization: -66.87 SS G_CDS: -3.95 Total: -70.82 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 86.05 SS G_CDS: -0.33 Total: 85.72 kcal Total: -70.62 -0.61 -71.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907107818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.986 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds