Wall clock time and date at job start Tue Mar 31 2020 22:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99580 * 2 1 4 4 H 1.48503 * 109.46885 * 239.99604 * 3 2 1 5 5 H 1.48498 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47298 * 119.99893 * 3 2 1 7 7 C 1.38697 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00329 * 185.06090 * 9 7 2 11 11 C 1.38838 * 120.15763 * 354.39850 * 10 9 7 12 12 C 1.38018 * 120.06990 * 179.97438 * 11 10 9 13 13 C 1.38567 * 120.40588 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32168 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91974 * 359.97438 * 14 13 12 16 16 C 1.47538 * 120.19899 * 180.02562 * 15 14 13 17 17 O 1.21581 * 120.00164 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99614 * 359.97438 * 16 15 14 19 19 C 1.46508 * 119.99759 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46979 * 180.02562 * 19 18 16 21 21 N 1.31814 * 119.09055 * 90.00082 * 20 19 18 22 22 C 1.32343 * 120.76514 * 179.97438 * 21 20 19 23 23 C 1.38563 * 119.03575 * 359.97438 * 22 21 20 24 24 C 1.38414 * 118.58420 * 0.02562 * 23 22 21 25 25 N 1.31765 * 119.09352 * 269.72629 * 20 19 18 26 26 C 1.51170 * 109.70904 * 180.02562 * 24 23 22 27 27 C 1.54407 * 105.19602 * 342.93491 * 26 24 23 28 28 C 1.51057 * 131.53886 * 179.97438 * 23 22 21 29 29 H 0.97004 * 120.00647 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.96064 * 359.97438 * 11 10 9 31 31 H 1.08006 * 119.79858 * 180.27658 * 12 11 10 32 32 H 1.08006 * 119.84368 * 179.97438 * 13 12 11 33 33 H 1.08005 * 120.04179 * 180.02562 * 14 13 12 34 34 H 0.97000 * 120.00462 * 0.02562 * 18 16 15 35 35 H 1.08998 * 109.46951 * 300.00263 * 19 18 16 36 36 H 1.08996 * 109.46551 * 60.00267 * 19 18 16 37 37 H 1.08003 * 120.48545 * 180.02562 * 22 21 20 38 38 H 1.09006 * 110.29980 * 224.00966 * 26 24 23 39 39 H 1.09000 * 110.30257 * 101.86372 * 26 24 23 40 40 H 1.08995 * 110.81220 * 267.91136 * 27 26 24 41 41 H 1.09000 * 110.98256 * 144.45966 * 27 26 24 42 42 H 1.08997 * 110.30724 * 315.96074 * 28 23 22 43 43 H 1.08994 * 110.30387 * 78.02093 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0687 -3.5029 0.1076 11 6 3.4556 -3.4401 0.0941 12 6 4.2013 -4.5963 0.2037 13 6 3.5746 -5.8259 0.3274 14 6 2.1988 -5.9074 0.3416 15 6 1.4310 -4.7460 0.2315 16 6 -0.0422 -4.8260 0.2466 17 8 -0.7071 -3.8128 0.1501 18 7 -0.6507 -6.0226 0.3664 19 6 -2.1136 -6.1022 0.3808 20 6 -2.5369 -7.5414 0.5241 21 7 -2.7118 -8.0408 1.7314 22 6 -3.0837 -9.3002 1.8957 23 6 -3.2889 -10.0922 0.7774 24 6 -3.0957 -9.5336 -0.4742 25 7 -2.7274 -8.2643 -0.5609 26 6 -3.3733 -10.5669 -1.5421 27 6 -3.3331 -11.9260 -0.8104 28 6 -3.7072 -11.5368 0.6360 29 1 -0.4851 0.8400 -0.0004 30 1 3.9514 -2.4854 -0.0024 31 1 5.2799 -4.5419 0.1972 32 1 4.1670 -6.7250 0.4122 33 1 1.7151 -6.8682 0.4386 34 1 -0.1203 -6.8311 0.4431 35 1 -2.5006 -5.5246 1.2203 36 1 -2.5086 -5.6979 -0.5512 37 1 -3.2261 -9.7046 2.8870 38 1 -2.6039 -10.5299 -2.3134 39 1 -4.3576 -10.4026 -1.9806 40 1 -2.3326 -12.3567 -0.8482 41 1 -4.0662 -12.6161 -1.2282 42 1 -3.1650 -12.1590 1.3479 43 1 -4.7817 -11.6361 0.7895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909660684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:03 Heat of formation + Delta-G solvation = 19.730736 kcal Electronic energy + Delta-G solvation = -27762.002288 eV Core-core repulsion = 23773.257011 eV Total energy + Delta-G solvation = -3988.745277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69967 -39.54519 -38.14465 -37.31392 -36.30148 -34.35408 -33.70733 -32.30747 -31.12906 -30.13501 -28.90737 -28.75853 -26.54511 -25.30911 -24.28440 -22.96505 -21.85500 -21.40381 -21.17652 -19.91086 -18.14723 -18.04456 -17.75310 -16.54563 -16.26475 -15.99408 -15.37177 -14.82573 -14.63310 -14.50745 -14.45718 -14.17832 -14.02367 -13.66948 -13.53424 -13.47197 -13.33373 -13.30167 -12.65192 -12.48403 -12.34363 -12.16563 -11.74462 -11.70212 -11.68329 -11.27708 -11.10465 -11.02359 -10.85618 -10.77017 -10.76349 -10.45066 -9.58209 -9.42721 -9.37885 -8.84506 -8.81171 -8.57424 -8.24050 -7.27816 -6.40778 -4.00822 0.54368 0.84214 1.74790 2.35207 3.14282 3.16531 3.18917 3.21295 3.39357 3.72324 3.78920 3.94688 3.96671 4.05544 4.19130 4.37840 4.48593 4.67498 4.73932 4.89919 5.10026 5.16731 5.19895 5.21179 5.26599 5.35542 5.44214 5.48467 5.50732 5.56094 5.63394 5.72821 5.84361 5.87777 6.09748 6.14679 6.16641 6.59295 6.70959 6.76127 6.86657 6.94385 7.09098 7.26558 7.32000 7.72364 7.89595 7.94851 8.10332 8.98351 9.09939 9.70927 10.72928 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.002419 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.602452 B =11574.378059 C =12569.876855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.404 4.404 8 H 0.093 0.907 9 O -0.123 6.123 10 C 0.190 3.810 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.231 4.231 14 C -0.037 4.037 15 C -0.224 4.224 16 C 0.559 3.441 17 O -0.498 6.498 18 N -0.735 5.735 19 C 0.197 3.803 20 C 0.312 3.688 21 N -0.499 5.499 22 C 0.158 3.842 23 C -0.209 4.209 24 C 0.164 3.836 25 N -0.496 5.496 26 C -0.075 4.075 27 C -0.119 4.119 28 C -0.072 4.072 29 H 0.272 0.728 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.392 0.608 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.168 0.832 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.791 -23.765 0.647 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.480 4.480 8 H 0.111 0.889 9 O -0.021 6.021 10 C 0.130 3.870 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.056 4.056 15 C -0.229 4.229 16 C 0.349 3.651 17 O -0.371 6.371 18 N -0.392 5.392 19 C 0.071 3.929 20 C 0.044 3.956 21 N -0.213 5.213 22 C -0.008 4.008 23 C -0.213 4.213 24 C 0.017 3.983 25 N -0.210 5.210 26 C -0.113 4.113 27 C -0.157 4.157 28 C -0.111 4.111 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.226 0.774 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.185 0.815 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.512 -21.720 0.456 22.413 hybrid contribution 0.552 -0.566 0.226 0.822 sum -4.960 -22.286 0.682 22.841 Atomic orbital electron populations 1.70119 1.05961 1.27839 1.42424 1.25382 0.95799 0.98940 0.96189 0.85799 0.78781 0.79699 0.79235 1.19386 1.20173 1.19373 1.21449 0.91863 0.81132 1.53541 0.88918 1.84174 1.33510 1.10955 1.73438 1.19253 0.89852 0.87352 0.90514 1.21151 0.93349 0.99326 1.11839 1.20887 0.98623 0.92292 0.95093 1.20444 0.93995 0.97132 1.13439 1.20739 0.93882 0.95437 0.95532 1.18769 0.91606 0.92174 1.20379 1.18189 0.87856 0.82378 0.76717 1.90955 1.65653 1.33623 1.46879 1.45726 1.05041 1.09591 1.78869 1.19771 0.82437 0.86298 1.04346 1.23199 0.92431 0.96870 0.83118 1.68411 1.13107 1.13283 1.26449 1.22771 0.90804 0.88305 0.98871 1.22278 1.03442 0.99454 0.96144 1.22249 0.90287 0.90431 0.95330 1.67584 1.12970 1.06038 1.34393 1.21073 1.03764 0.90459 0.95963 1.22352 1.02972 0.96104 0.94248 1.20885 1.01867 0.90381 0.97918 0.91797 0.85030 0.87175 0.87336 0.87343 0.77416 0.88882 0.88992 0.81504 0.88944 0.88557 0.90371 0.89515 0.89918 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.39 13.67 55.48 0.76 -24.63 16 2 C 0.04 1.26 5.49 -17.52 -0.10 1.17 16 3 Si 0.94 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 7 C -0.40 -11.57 9.49 30.90 0.29 -11.28 16 8 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 9 O -0.12 -3.68 7.84 -21.05 -0.16 -3.84 16 10 C 0.19 4.82 6.66 -38.60 -0.26 4.57 16 11 C -0.24 -5.20 9.16 -39.44 -0.36 -5.56 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 13 C -0.23 -3.94 10.02 -39.61 -0.40 -4.33 16 14 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16 15 C -0.22 -5.05 5.89 -104.81 -0.62 -5.67 16 16 C 0.56 12.82 7.76 -12.47 -0.10 12.72 16 17 O -0.50 -13.91 15.17 -16.56 -0.25 -14.17 16 18 N -0.74 -13.19 5.50 -62.53 -0.34 -13.53 16 19 C 0.20 3.28 6.10 -5.19 -0.03 3.25 16 20 C 0.31 4.55 7.01 -157.20 -1.10 3.45 16 21 N -0.50 -6.76 10.34 -10.73 -0.11 -6.87 16 22 C 0.16 1.59 11.31 -17.21 -0.19 1.40 16 23 C -0.21 -1.87 6.20 -104.26 -0.65 -2.51 16 24 C 0.16 1.76 7.37 -82.03 -0.60 1.16 16 25 N -0.50 -6.91 10.34 -6.86 -0.07 -6.98 16 26 C -0.07 -0.51 6.77 -26.92 -0.18 -0.69 16 27 C -0.12 -0.52 7.08 -25.27 -0.18 -0.70 16 28 C -0.07 -0.37 6.76 -26.98 -0.18 -0.55 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.13 2.82 5.64 -52.48 -0.30 2.53 16 31 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.11 1.59 6.40 -52.48 -0.34 1.26 16 34 H 0.39 6.10 6.49 -40.82 -0.27 5.84 16 35 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 36 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -36.65 367.73 -10.05 -46.70 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.96 Total: 7.98 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -5.43 Total: -5.93 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.23 Total: -52.02 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.42 Total: -18.01 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.65 -10.05 -46.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909660684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.428 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds