Wall clock time and date at job start Tue Mar 31 2020 22:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99580 * 2 1 4 4 H 1.48503 * 109.46885 * 239.99604 * 3 2 1 5 5 H 1.48498 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47298 * 119.99893 * 3 2 1 7 7 C 1.38697 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00329 * 185.06090 * 9 7 2 11 11 C 1.38838 * 120.15763 * 354.39850 * 10 9 7 12 12 C 1.38018 * 120.06990 * 179.97438 * 11 10 9 13 13 C 1.38567 * 120.40588 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32168 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91974 * 359.97438 * 14 13 12 16 16 C 1.47538 * 120.19899 * 180.02562 * 15 14 13 17 17 O 1.21581 * 120.00164 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99614 * 359.97438 * 16 15 14 19 19 C 1.46508 * 119.99759 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46979 * 180.02562 * 19 18 16 21 21 N 1.31814 * 119.09055 * 90.00082 * 20 19 18 22 22 C 1.32343 * 120.76514 * 179.97438 * 21 20 19 23 23 C 1.38563 * 119.03575 * 359.97438 * 22 21 20 24 24 C 1.38414 * 118.58420 * 0.02562 * 23 22 21 25 25 N 1.31765 * 119.09352 * 269.72629 * 20 19 18 26 26 C 1.51170 * 109.70904 * 180.02562 * 24 23 22 27 27 C 1.54407 * 105.19602 * 342.93491 * 26 24 23 28 28 C 1.51057 * 131.53886 * 179.97438 * 23 22 21 29 29 H 0.97004 * 120.00647 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.96064 * 359.97438 * 11 10 9 31 31 H 1.08006 * 119.79858 * 180.27658 * 12 11 10 32 32 H 1.08006 * 119.84368 * 179.97438 * 13 12 11 33 33 H 1.08005 * 120.04179 * 180.02562 * 14 13 12 34 34 H 0.97000 * 120.00462 * 0.02562 * 18 16 15 35 35 H 1.08998 * 109.46951 * 300.00263 * 19 18 16 36 36 H 1.08996 * 109.46551 * 60.00267 * 19 18 16 37 37 H 1.08003 * 120.48545 * 180.02562 * 22 21 20 38 38 H 1.09006 * 110.29980 * 224.00966 * 26 24 23 39 39 H 1.09000 * 110.30257 * 101.86372 * 26 24 23 40 40 H 1.08995 * 110.81220 * 267.91136 * 27 26 24 41 41 H 1.09000 * 110.98256 * 144.45966 * 27 26 24 42 42 H 1.08997 * 110.30724 * 315.96074 * 28 23 22 43 43 H 1.08994 * 110.30387 * 78.02093 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0687 -3.5029 0.1076 11 6 3.4556 -3.4401 0.0941 12 6 4.2013 -4.5963 0.2037 13 6 3.5746 -5.8259 0.3274 14 6 2.1988 -5.9074 0.3416 15 6 1.4310 -4.7460 0.2315 16 6 -0.0422 -4.8260 0.2466 17 8 -0.7071 -3.8128 0.1501 18 7 -0.6507 -6.0226 0.3664 19 6 -2.1136 -6.1022 0.3808 20 6 -2.5369 -7.5414 0.5241 21 7 -2.7118 -8.0408 1.7314 22 6 -3.0837 -9.3002 1.8957 23 6 -3.2889 -10.0922 0.7774 24 6 -3.0957 -9.5336 -0.4742 25 7 -2.7274 -8.2643 -0.5609 26 6 -3.3733 -10.5669 -1.5421 27 6 -3.3331 -11.9260 -0.8104 28 6 -3.7072 -11.5368 0.6360 29 1 -0.4851 0.8400 -0.0004 30 1 3.9514 -2.4854 -0.0024 31 1 5.2799 -4.5419 0.1972 32 1 4.1670 -6.7250 0.4122 33 1 1.7151 -6.8682 0.4386 34 1 -0.1203 -6.8311 0.4431 35 1 -2.5006 -5.5246 1.2203 36 1 -2.5086 -5.6979 -0.5512 37 1 -3.2261 -9.7046 2.8870 38 1 -2.6039 -10.5299 -2.3134 39 1 -4.3576 -10.4026 -1.9806 40 1 -2.3326 -12.3567 -0.8482 41 1 -4.0662 -12.6161 -1.2282 42 1 -3.1650 -12.1590 1.3479 43 1 -4.7817 -11.6361 0.7895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909660684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:03 Heat of formation + Delta-G solvation = -5.935553 kcal Electronic energy + Delta-G solvation = -27763.115262 eV Core-core repulsion = 23773.257011 eV Total energy + Delta-G solvation = -3989.858251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.56410 -41.30213 -39.87037 -38.15075 -38.02629 -35.81343 -34.72726 -34.32393 -32.54785 -31.21800 -30.59656 -29.53936 -27.72222 -27.21998 -25.12456 -24.49149 -23.20676 -22.60582 -21.84720 -21.61383 -19.87484 -19.46771 -19.01175 -18.02709 -17.45969 -17.07606 -16.54901 -16.33286 -16.20568 -16.00255 -15.74791 -15.50438 -15.38800 -15.29880 -15.04365 -14.46366 -14.32069 -14.15329 -14.02721 -13.88282 -13.83761 -13.54845 -13.04009 -12.97807 -12.72481 -12.51027 -12.38231 -12.21800 -12.14916 -12.13498 -11.82271 -11.62539 -11.45797 -10.82392 -10.75872 -10.29377 -10.26127 -10.08031 -9.83794 -9.06108 -8.43971 -6.15364 -0.35652 0.01535 0.08513 0.70352 1.32805 1.46140 1.51097 1.99773 2.03438 2.16667 2.48044 2.73699 2.86322 2.91824 3.20668 3.42827 3.44081 3.53593 3.67500 3.86398 4.03045 4.05658 4.16221 4.24373 4.26565 4.27095 4.47264 4.50358 4.63196 4.72381 4.75933 4.79373 4.89664 4.94703 5.00473 5.05920 5.10724 5.16256 5.28201 5.30787 5.35569 5.45458 5.58135 5.66893 5.90749 5.95784 6.13935 6.51215 6.94659 6.96454 7.35151 7.79663 8.76364 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.002419 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.602452 B =11574.378059 C =12569.876855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.023 4.023 3 Si 1.023 2.977 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.429 4.429 8 H 0.109 0.891 9 O -0.187 6.187 10 C 0.151 3.849 11 C -0.255 4.255 12 C -0.037 4.037 13 C -0.200 4.200 14 C -0.031 4.031 15 C -0.244 4.244 16 C 0.554 3.446 17 O -0.561 6.561 18 N -0.711 5.711 19 C 0.201 3.799 20 C 0.293 3.707 21 N -0.521 5.521 22 C 0.147 3.853 23 C -0.189 4.189 24 C 0.140 3.860 25 N -0.522 5.522 26 C -0.076 4.076 27 C -0.109 4.109 28 C -0.069 4.069 29 H 0.271 0.729 30 H 0.127 0.873 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.148 0.852 34 H 0.406 0.594 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.203 0.797 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 -28.913 1.190 29.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.505 4.505 8 H 0.126 0.874 9 O -0.089 6.089 10 C 0.096 3.904 11 C -0.274 4.274 12 C -0.055 4.055 13 C -0.218 4.218 14 C -0.050 4.050 15 C -0.248 4.248 16 C 0.344 3.656 17 O -0.440 6.440 18 N -0.366 5.366 19 C 0.075 3.925 20 C 0.025 3.975 21 N -0.235 5.235 22 C -0.017 4.017 23 C -0.194 4.194 24 C -0.006 4.006 25 N -0.237 5.237 26 C -0.114 4.114 27 C -0.147 4.147 28 C -0.107 4.107 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.166 0.834 34 H 0.243 0.757 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.219 0.781 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.034 -27.007 1.006 27.196 hybrid contribution -0.111 0.445 0.085 0.467 sum -3.145 -26.562 1.092 26.770 Atomic orbital electron populations 1.70322 1.08421 1.28712 1.46641 1.26797 0.96748 1.03202 0.95459 0.84608 0.77327 0.73735 0.80185 1.17700 1.19852 1.17744 1.22030 0.92774 0.81729 1.53919 0.87399 1.84181 1.35196 1.12166 1.77389 1.20034 0.91733 0.87391 0.91238 1.21319 0.92125 1.01094 1.12841 1.21442 1.00828 0.91081 0.92135 1.21147 0.93619 0.98639 1.08416 1.21203 0.94687 0.95249 0.93857 1.19166 0.91759 0.93068 1.20847 1.18514 0.88425 0.82721 0.75912 1.90932 1.66982 1.36082 1.49986 1.45453 1.05890 1.08585 1.76711 1.19591 0.81317 0.88685 1.02863 1.22446 0.95099 0.95796 0.84129 1.68326 1.13999 1.15330 1.25881 1.23383 0.90173 0.87187 1.00966 1.22788 1.00466 1.01293 0.94814 1.23031 0.89994 0.89756 0.97844 1.67482 1.14010 1.07873 1.34347 1.21277 1.04118 0.90682 0.95327 1.22401 1.04232 0.94783 0.93283 1.21068 1.03189 0.87517 0.98936 0.91986 0.85503 0.82498 0.81883 0.83425 0.75720 0.90397 0.90637 0.78060 0.89099 0.87637 0.89813 0.86913 0.87726 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.29 13.67 21.62 0.30 -60.00 16 2 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 3 Si 1.02 44.88 29.55 68.60 2.03 46.91 16 4 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 7 C -0.43 -26.36 9.49 67.93 0.64 -25.71 16 8 H 0.11 5.90 5.21 -2.91 -0.02 5.89 16 9 O -0.19 -12.17 7.84 0.84 0.01 -12.17 16 10 C 0.15 8.06 6.66 22.91 0.15 8.21 16 11 C -0.25 -11.11 9.16 22.36 0.20 -10.90 16 12 C -0.04 -1.18 10.03 22.30 0.22 -0.95 16 13 C -0.20 -5.69 10.02 22.25 0.22 -5.47 16 14 C -0.03 -1.04 9.53 22.52 0.21 -0.83 16 15 C -0.24 -11.24 5.89 -19.99 -0.12 -11.36 16 16 C 0.55 27.14 7.76 86.70 0.67 27.81 16 17 O -0.56 -34.65 15.17 16.92 0.26 -34.39 16 18 N -0.71 -26.70 5.50 -470.00 -2.58 -29.28 16 19 C 0.20 7.30 6.10 85.63 0.52 7.82 16 20 C 0.29 8.88 7.01 138.75 0.97 9.85 16 21 N -0.52 -14.09 10.34 -187.87 -1.94 -16.03 16 22 C 0.15 2.67 11.31 84.69 0.96 3.63 16 23 C -0.19 -2.87 6.20 -19.63 -0.12 -2.99 16 24 C 0.14 2.81 7.37 42.66 0.31 3.13 16 25 N -0.52 -14.77 10.34 -175.63 -1.82 -16.59 16 26 C -0.08 -0.86 6.77 30.47 0.21 -0.65 16 27 C -0.11 -0.49 7.08 31.54 0.22 -0.27 16 28 C -0.07 -0.39 6.76 30.43 0.21 -0.18 16 29 H 0.27 16.55 8.31 -92.71 -0.77 15.78 16 30 H 0.13 5.54 5.64 -2.91 -0.02 5.52 16 31 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 32 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 33 H 0.15 3.70 6.40 -2.91 -0.02 3.68 16 34 H 0.41 12.52 6.49 -92.71 -0.60 11.92 16 35 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -93.84 367.73 2.68 -91.16 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.47 Total: 30.16 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.97 Total: 0.23 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -6.05 Total: -121.90 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: 0.26 Total: -46.56 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -93.84 2.68 -91.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909660684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.227 kcal (2) G-P(sol) polarization free energy of solvation -93.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds