Wall clock time and date at job start Tue Mar 31 2020 22:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86799 * 119.99852 * 2 1 4 4 H 1.48495 * 109.47481 * 270.00051 * 3 2 1 5 5 H 1.48498 * 109.47293 * 30.00216 * 3 2 1 6 6 H 1.48506 * 109.47254 * 149.99649 * 3 2 1 7 7 C 1.38653 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00486 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99293 * 359.97438 * 7 2 1 10 10 C 1.35765 * 116.99839 * 185.05717 * 9 7 2 11 11 C 1.39010 * 119.99228 * 174.48447 * 10 9 7 12 12 C 1.38211 * 120.24974 * 179.97438 * 11 10 9 13 13 C 1.38028 * 120.22678 * 359.73981 * 12 11 10 14 14 C 1.39712 * 119.97737 * 0.51599 * 13 12 11 15 15 C 1.47493 * 120.12160 * 179.76528 * 14 13 12 16 16 N 1.29756 * 120.00160 * 359.71765 * 15 14 13 17 17 N 1.40098 * 120.00225 * 179.97438 * 16 15 14 18 18 C 1.34781 * 119.99857 * 180.02562 * 17 16 15 19 19 O 1.21303 * 119.99847 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99693 * 180.02562 * 18 17 16 21 21 N 1.46496 * 109.46947 * 179.97438 * 20 18 17 22 22 C 1.39682 * 120.00055 * 179.97438 * 21 20 18 23 23 C 1.38906 * 120.07461 * 359.72832 * 22 21 20 24 24 C 1.38103 * 119.92532 * 179.76347 * 23 22 21 25 25 C 1.38285 * 120.07202 * 0.51224 * 24 23 22 26 26 C 1.38286 * 120.15447 * 359.73827 * 25 24 23 27 27 C 1.38108 * 120.07144 * 0.02562 * 26 25 24 28 28 C 1.38569 * 119.98808 * 354.45995 * 10 9 7 29 29 H 0.96998 * 120.00302 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.88003 * 359.95831 * 11 10 9 31 31 H 1.08002 * 119.88858 * 180.02562 * 12 11 10 32 32 H 1.07998 * 120.00990 * 180.27691 * 13 12 11 33 33 H 1.08000 * 120.00577 * 179.72328 * 15 14 13 34 34 H 0.96993 * 119.99784 * 0.02562 * 17 16 15 35 35 H 1.08998 * 109.47788 * 59.99817 * 20 18 17 36 36 H 1.09006 * 109.46985 * 299.99944 * 20 18 17 37 37 H 0.97005 * 120.00494 * 0.27488 * 21 20 18 38 38 H 1.08006 * 120.03595 * 359.97438 * 23 22 21 39 39 H 1.08003 * 119.96549 * 180.25178 * 24 23 22 40 40 H 1.07998 * 119.92130 * 179.71827 * 25 24 23 41 41 H 1.07991 * 119.96562 * 180.02562 * 26 25 24 42 42 H 1.07996 * 120.04079 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.11728 * 0.05111 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0701 -3.5046 0.1087 11 6 1.4345 -4.7347 0.2317 12 6 2.1779 -5.8948 0.3405 13 6 3.5570 -5.8405 0.3225 14 6 4.2057 -4.6088 0.2047 15 6 5.6793 -4.5466 0.1904 16 7 6.3756 -5.6367 0.2927 17 7 7.7753 -5.5778 0.2786 18 6 8.4986 -6.7101 0.3844 19 8 7.9376 -7.7803 0.4914 20 6 10.0041 -6.6467 0.3697 21 7 10.5512 -7.9995 0.4985 22 6 11.9341 -8.1956 0.5093 23 6 12.7921 -7.1094 0.3923 24 6 14.1589 -7.3063 0.4082 25 6 14.6736 -8.5840 0.5298 26 6 13.8223 -9.6681 0.6413 27 6 12.4545 -9.4778 0.6309 28 6 3.4541 -3.4377 0.0949 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -4.7842 0.2424 31 1 1.6780 -6.8474 0.4354 32 1 4.1344 -6.7496 0.4033 33 1 6.1788 -3.5939 0.0948 34 1 8.2238 -4.7221 0.1926 35 1 10.3502 -6.0344 1.2024 36 1 10.3401 -6.2063 -0.5692 37 1 9.9530 -8.7597 0.5719 38 1 12.3907 -6.1117 0.2924 39 1 14.8266 -6.4618 0.3214 40 1 15.7428 -8.7356 0.5374 41 1 14.2276 -10.6646 0.7365 42 1 11.7901 -10.3249 0.7176 43 1 3.9496 -2.4827 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915937262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:38 Heat of formation + Delta-G solvation = 40.734631 kcal Electronic energy + Delta-G solvation = -25976.384989 eV Core-core repulsion = 21988.550510 eV Total energy + Delta-G solvation = -3987.834480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.27430 -39.38793 -39.10661 -37.19011 -36.11905 -35.48159 -32.95986 -32.26506 -31.26661 -30.54592 -29.69513 -28.78149 -26.89425 -25.42054 -23.72509 -22.95634 -21.92972 -21.69728 -20.84833 -20.31377 -18.50729 -18.19438 -17.29183 -16.91847 -16.68625 -16.21489 -16.12682 -15.82155 -15.14095 -14.67927 -14.58672 -14.32406 -14.22337 -14.15379 -13.80084 -13.71995 -13.71209 -13.47015 -13.01826 -12.90901 -12.52776 -12.48614 -11.77841 -11.76587 -11.40080 -11.27686 -10.98962 -10.95588 -10.90617 -10.55582 -10.53152 -10.42452 -10.16310 -9.51628 -9.47919 -9.23860 -8.88879 -7.99115 -7.80225 -7.33606 -6.51539 -4.11891 1.07389 1.12747 1.30274 2.08002 2.16826 2.27463 2.89221 3.07016 3.08476 3.09937 3.12498 3.59751 3.89368 4.05037 4.51276 4.55225 4.65157 4.67673 4.72578 4.76638 4.91348 4.94590 5.02006 5.15777 5.19668 5.23267 5.39015 5.57745 5.67932 5.70616 5.86221 5.95651 6.06650 6.17254 6.21998 6.33485 6.47888 6.53175 6.67751 6.75340 6.93941 6.97491 7.06850 7.16028 7.28981 7.33503 7.37846 7.64380 7.91246 8.15169 8.93485 9.62045 10.66265 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.001618 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.780351 B =17304.028833 C =18787.092103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.146 3.854 11 C -0.167 4.167 12 C -0.086 4.086 13 C -0.162 4.162 14 C -0.028 4.028 15 C 0.141 3.859 16 N -0.245 5.245 17 N -0.584 5.584 18 C 0.526 3.474 19 O -0.502 6.502 20 C 0.113 3.887 21 N -0.736 5.736 22 C 0.219 3.781 23 C -0.202 4.202 24 C -0.072 4.072 25 C -0.182 4.182 26 C -0.072 4.072 27 C -0.193 4.193 28 C -0.199 4.199 29 H 0.271 0.729 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.384 0.616 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.413 0.587 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.664 -10.939 0.612 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.471 4.471 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.093 3.907 11 C -0.187 4.187 12 C -0.105 4.105 13 C -0.183 4.183 14 C -0.031 4.031 15 C -0.069 4.069 16 N -0.049 5.049 17 N -0.326 5.326 18 C 0.312 3.688 19 O -0.374 6.374 20 C -0.017 4.017 21 N -0.370 5.370 22 C 0.116 3.884 23 C -0.225 4.225 24 C -0.091 4.091 25 C -0.202 4.202 26 C -0.091 4.091 27 C -0.215 4.215 28 C -0.221 4.221 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.222 0.778 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.251 0.749 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 23.921 -12.310 0.754 26.913 hybrid contribution 0.693 2.047 -0.126 2.165 sum 24.615 -10.263 0.629 26.676 Atomic orbital electron populations 1.70026 1.05957 1.27750 1.45773 1.25273 0.95830 0.98803 0.96489 0.85730 0.78903 0.80179 0.78704 1.19878 1.20229 1.19241 1.21277 0.91701 0.80810 1.53325 0.89109 1.84017 1.33976 1.11305 1.78728 1.19168 0.89825 0.88347 0.93388 1.20447 0.99964 0.90319 1.08017 1.20662 0.93529 0.97037 0.99226 1.20888 0.94226 0.96571 1.06617 1.17975 0.87862 0.94032 1.03208 1.24715 0.94705 0.93955 0.93527 1.75127 0.88380 1.26292 1.15094 1.46842 1.03085 1.09543 1.73097 1.20312 0.88687 0.83420 0.76390 1.90729 1.72085 1.28285 1.46295 1.20947 0.89622 0.87283 1.03826 1.44341 1.03571 1.07245 1.81843 1.17783 0.82932 0.93918 0.93761 1.20659 0.93467 0.97507 1.10820 1.20902 0.94400 0.97088 0.96710 1.20923 0.99530 0.92783 1.06924 1.20892 0.92601 0.98803 0.96765 1.20624 0.95825 0.95108 1.09952 1.21191 0.93778 0.97616 1.09498 0.91944 0.86138 0.86443 0.86195 0.86566 0.77784 0.88792 0.88818 0.74890 0.86220 0.86202 0.86503 0.86140 0.86098 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.35 13.67 55.48 0.76 -23.59 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.49 29.55 -169.99 -5.02 14.47 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 7 C -0.39 -10.42 9.48 30.89 0.29 -10.12 16 8 H 0.09 2.16 5.20 -52.49 -0.27 1.89 16 9 O -0.18 -4.78 9.76 -0.01 0.00 -4.78 16 10 C 0.15 3.31 6.64 -39.17 -0.26 3.05 16 11 C -0.17 -3.33 9.98 -39.31 -0.39 -3.72 16 12 C -0.09 -1.49 10.02 -39.67 -0.40 -1.89 16 13 C -0.16 -2.84 9.58 -39.11 -0.37 -3.21 16 14 C -0.03 -0.49 5.87 -105.07 -0.62 -1.11 16 15 C 0.14 2.00 10.75 -14.66 -0.16 1.85 16 16 N -0.25 -3.64 10.15 32.16 0.33 -3.31 16 17 N -0.58 -6.41 6.26 31.22 0.20 -6.22 16 18 C 0.53 5.98 8.02 -10.99 -0.09 5.89 16 19 O -0.50 -7.89 16.00 5.54 0.09 -7.80 16 20 C 0.11 0.83 5.39 -5.20 -0.03 0.80 16 21 N -0.74 -6.56 5.70 -59.81 -0.34 -6.90 16 22 C 0.22 1.93 6.65 -83.78 -0.56 1.38 16 23 C -0.20 -1.58 9.31 -39.38 -0.37 -1.94 16 24 C -0.07 -0.52 10.04 -39.61 -0.40 -0.92 16 25 C -0.18 -1.32 10.04 -39.55 -0.40 -1.72 16 26 C -0.07 -0.54 10.04 -39.61 -0.40 -0.94 16 27 C -0.19 -1.63 9.90 -39.38 -0.39 -2.02 16 28 C -0.20 -3.94 8.91 -38.96 -0.35 -4.28 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 31 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.12 2.04 7.55 -52.49 -0.40 1.65 16 33 H 0.12 1.27 8.02 -52.49 -0.42 0.85 16 34 H 0.38 2.66 8.65 -182.61 -1.58 1.08 16 35 H 0.09 0.50 7.96 -51.93 -0.41 0.09 16 36 H 0.09 0.50 7.94 -51.93 -0.41 0.09 16 37 H 0.41 4.09 7.45 -40.82 -0.30 3.79 16 38 H 0.12 0.72 6.73 -52.48 -0.35 0.36 16 39 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 40 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.13 2.52 5.63 -52.48 -0.30 2.23 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -33.30 380.33 -9.36 -42.66 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.12 Total: 7.68 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -4.97 Total: -17.95 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.94 Total: -40.01 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.30 -9.36 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915937262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.390 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds