Wall clock time and date at job start Tue Mar 31 2020 22:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86799 * 119.99852 * 2 1 4 4 H 1.48495 * 109.47481 * 270.00051 * 3 2 1 5 5 H 1.48498 * 109.47293 * 30.00216 * 3 2 1 6 6 H 1.48506 * 109.47254 * 149.99649 * 3 2 1 7 7 C 1.38653 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00486 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99293 * 359.97438 * 7 2 1 10 10 C 1.35765 * 116.99839 * 185.05717 * 9 7 2 11 11 C 1.39010 * 119.99228 * 174.48447 * 10 9 7 12 12 C 1.38211 * 120.24974 * 179.97438 * 11 10 9 13 13 C 1.38028 * 120.22678 * 359.73981 * 12 11 10 14 14 C 1.39712 * 119.97737 * 0.51599 * 13 12 11 15 15 C 1.47493 * 120.12160 * 179.76528 * 14 13 12 16 16 N 1.29756 * 120.00160 * 359.71765 * 15 14 13 17 17 N 1.40098 * 120.00225 * 179.97438 * 16 15 14 18 18 C 1.34781 * 119.99857 * 180.02562 * 17 16 15 19 19 O 1.21303 * 119.99847 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99693 * 180.02562 * 18 17 16 21 21 N 1.46496 * 109.46947 * 179.97438 * 20 18 17 22 22 C 1.39682 * 120.00055 * 179.97438 * 21 20 18 23 23 C 1.38906 * 120.07461 * 359.72832 * 22 21 20 24 24 C 1.38103 * 119.92532 * 179.76347 * 23 22 21 25 25 C 1.38285 * 120.07202 * 0.51224 * 24 23 22 26 26 C 1.38286 * 120.15447 * 359.73827 * 25 24 23 27 27 C 1.38108 * 120.07144 * 0.02562 * 26 25 24 28 28 C 1.38569 * 119.98808 * 354.45995 * 10 9 7 29 29 H 0.96998 * 120.00302 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.88003 * 359.95831 * 11 10 9 31 31 H 1.08002 * 119.88858 * 180.02562 * 12 11 10 32 32 H 1.07998 * 120.00990 * 180.27691 * 13 12 11 33 33 H 1.08000 * 120.00577 * 179.72328 * 15 14 13 34 34 H 0.96993 * 119.99784 * 0.02562 * 17 16 15 35 35 H 1.08998 * 109.47788 * 59.99817 * 20 18 17 36 36 H 1.09006 * 109.46985 * 299.99944 * 20 18 17 37 37 H 0.97005 * 120.00494 * 0.27488 * 21 20 18 38 38 H 1.08006 * 120.03595 * 359.97438 * 23 22 21 39 39 H 1.08003 * 119.96549 * 180.25178 * 24 23 22 40 40 H 1.07998 * 119.92130 * 179.71827 * 25 24 23 41 41 H 1.07991 * 119.96562 * 180.02562 * 26 25 24 42 42 H 1.07996 * 120.04079 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.11728 * 0.05111 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0701 -3.5046 0.1087 11 6 1.4345 -4.7347 0.2317 12 6 2.1779 -5.8948 0.3405 13 6 3.5570 -5.8405 0.3225 14 6 4.2057 -4.6088 0.2047 15 6 5.6793 -4.5466 0.1904 16 7 6.3756 -5.6367 0.2927 17 7 7.7753 -5.5778 0.2786 18 6 8.4986 -6.7101 0.3844 19 8 7.9376 -7.7803 0.4914 20 6 10.0041 -6.6467 0.3697 21 7 10.5512 -7.9995 0.4985 22 6 11.9341 -8.1956 0.5093 23 6 12.7921 -7.1094 0.3923 24 6 14.1589 -7.3063 0.4082 25 6 14.6736 -8.5840 0.5298 26 6 13.8223 -9.6681 0.6413 27 6 12.4545 -9.4778 0.6309 28 6 3.4541 -3.4377 0.0949 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -4.7842 0.2424 31 1 1.6780 -6.8474 0.4354 32 1 4.1344 -6.7496 0.4033 33 1 6.1788 -3.5939 0.0948 34 1 8.2238 -4.7221 0.1926 35 1 10.3502 -6.0344 1.2024 36 1 10.3401 -6.2063 -0.5692 37 1 9.9530 -8.7597 0.5719 38 1 12.3907 -6.1117 0.2924 39 1 14.8266 -6.4618 0.3214 40 1 15.7428 -8.7356 0.5374 41 1 14.2276 -10.6646 0.7365 42 1 11.7901 -10.3249 0.7176 43 1 3.9496 -2.4827 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915937262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:37 Heat of formation + Delta-G solvation = 19.154733 kcal Electronic energy + Delta-G solvation = -25977.320764 eV Core-core repulsion = 21988.550510 eV Total energy + Delta-G solvation = -3988.770254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.12479 -40.75614 -40.00526 -38.60259 -37.39123 -36.17024 -34.37960 -33.86843 -31.88169 -31.55952 -30.73911 -30.18431 -27.68512 -27.20564 -24.91975 -23.58774 -23.29464 -22.55648 -21.75109 -21.56872 -19.91855 -19.22206 -18.59980 -18.11100 -17.56167 -16.97705 -16.90863 -16.74663 -16.49675 -16.18068 -15.96277 -15.53448 -15.31198 -15.21366 -14.93874 -14.72633 -14.39870 -14.29715 -14.16097 -14.07459 -13.94190 -13.50964 -13.36939 -12.91446 -12.52281 -12.46887 -12.39886 -12.28024 -12.08942 -11.78770 -11.44837 -11.38303 -11.11373 -11.11181 -10.84821 -10.55439 -9.78410 -9.37310 -8.96376 -8.42472 -8.38348 -6.11150 -0.21812 0.58027 0.69865 0.74295 1.13050 1.21022 1.39860 1.48535 1.56823 1.75131 2.20987 2.45962 2.89486 3.04537 3.21016 3.24889 3.50873 3.64482 3.95304 4.03819 4.15506 4.23685 4.26353 4.27729 4.33409 4.35938 4.43835 4.59358 4.66451 4.69211 4.76800 4.86667 5.05116 5.12780 5.19232 5.19825 5.40408 5.59015 5.64256 5.64654 5.65438 5.79902 5.89975 5.99980 6.04417 6.12236 6.30734 6.42088 6.67409 7.02181 7.24665 7.81587 8.80513 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.001618 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.780351 B =17304.028833 C =18787.092103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.247 1.247 7 C -0.412 4.412 8 H 0.109 0.891 9 O -0.230 6.230 10 C 0.112 3.888 11 C -0.181 4.181 12 C -0.076 4.076 13 C -0.156 4.156 14 C -0.023 4.023 15 C 0.138 3.862 16 N -0.269 5.269 17 N -0.571 5.571 18 C 0.525 3.475 19 O -0.551 6.551 20 C 0.122 3.878 21 N -0.746 5.746 22 C 0.204 3.796 23 C -0.209 4.209 24 C -0.079 4.079 25 C -0.190 4.190 26 C -0.081 4.081 27 C -0.212 4.212 28 C -0.199 4.199 29 H 0.271 0.729 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.409 0.591 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.404 0.596 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.120 0.880 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.654 -10.790 0.651 30.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.836 3.164 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.170 1.170 7 C -0.488 4.488 8 H 0.127 0.873 9 O -0.137 6.137 10 C 0.061 3.939 11 C -0.202 4.202 12 C -0.094 4.094 13 C -0.177 4.177 14 C -0.026 4.026 15 C -0.072 4.072 16 N -0.073 5.073 17 N -0.316 5.316 18 C 0.313 3.687 19 O -0.426 6.426 20 C -0.007 4.007 21 N -0.379 5.379 22 C 0.102 3.898 23 C -0.231 4.231 24 C -0.098 4.098 25 C -0.210 4.210 26 C -0.100 4.100 27 C -0.235 4.235 28 C -0.220 4.220 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.170 0.830 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.250 0.750 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.241 0.759 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.138 0.862 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 27.972 -12.179 0.791 30.519 hybrid contribution -0.333 1.625 -0.118 1.663 sum 27.639 -10.554 0.673 29.593 Atomic orbital electron populations 1.70186 1.08128 1.28704 1.48938 1.26570 0.96771 1.02773 0.95955 0.84607 0.78018 0.74612 0.79144 1.18969 1.20253 1.17041 1.21862 0.92741 0.81192 1.53001 0.87333 1.83989 1.35718 1.12495 1.81473 1.19693 0.91294 0.88066 0.94825 1.20660 1.00383 0.90503 1.08626 1.21011 0.93595 0.97459 0.97292 1.21193 0.94426 0.97113 1.04953 1.18195 0.90022 0.93016 1.01356 1.24552 0.92951 0.95493 0.94155 1.74948 0.90908 1.27440 1.14008 1.46701 1.01539 1.10913 1.72403 1.21127 0.90205 0.82573 0.74769 1.90715 1.73282 1.30113 1.48448 1.21099 0.86159 0.87128 1.06290 1.44421 1.03577 1.07564 1.82349 1.17960 0.82965 0.94427 0.94483 1.20940 0.93656 0.98081 1.10438 1.21239 0.94686 0.97806 0.96024 1.21236 1.00487 0.92871 1.06414 1.21154 0.92399 0.99891 0.96538 1.20816 0.96466 0.95417 1.10776 1.21243 0.92784 0.98785 1.09217 0.91994 0.86256 0.83000 0.85129 0.82982 0.74957 0.86068 0.86070 0.75869 0.84244 0.84094 0.84859 0.84689 0.86170 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 13.67 21.61 0.30 -54.42 16 2 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 3 Si 1.02 40.23 29.55 68.60 2.03 42.26 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 7 C -0.41 -22.40 9.48 67.92 0.64 -21.76 16 8 H 0.11 5.20 5.20 -2.91 -0.02 5.19 16 9 O -0.23 -13.09 9.76 -22.95 -0.22 -13.32 16 10 C 0.11 5.19 6.64 22.53 0.15 5.34 16 11 C -0.18 -7.34 9.98 22.45 0.22 -7.12 16 12 C -0.08 -2.51 10.02 22.21 0.22 -2.29 16 13 C -0.16 -5.17 9.58 22.58 0.22 -4.95 16 14 C -0.02 -0.78 5.87 -20.16 -0.12 -0.89 16 15 C 0.14 3.53 10.75 87.44 0.94 4.47 16 16 N -0.27 -7.23 10.15 -52.16 -0.53 -7.76 16 17 N -0.57 -10.67 6.26 -173.51 -1.09 -11.76 16 18 C 0.53 10.65 8.02 87.65 0.70 11.35 16 19 O -0.55 -16.70 16.00 -3.10 -0.05 -16.75 16 20 C 0.12 1.39 5.39 85.63 0.46 1.85 16 21 N -0.75 -12.03 5.70 -343.13 -1.96 -13.99 16 22 C 0.20 3.27 6.65 38.21 0.25 3.52 16 23 C -0.21 -2.68 9.31 22.40 0.21 -2.47 16 24 C -0.08 -0.94 10.04 22.25 0.22 -0.71 16 25 C -0.19 -2.38 10.04 22.29 0.22 -2.16 16 26 C -0.08 -1.12 10.04 22.25 0.22 -0.90 16 27 C -0.21 -3.44 9.90 22.40 0.22 -3.22 16 28 C -0.20 -7.79 8.91 22.67 0.20 -7.59 16 29 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.13 4.13 7.55 -2.91 -0.02 4.11 16 33 H 0.15 2.70 8.02 -2.91 -0.02 2.67 16 34 H 0.41 3.89 8.65 -213.33 -1.85 2.05 16 35 H 0.12 0.78 7.96 -2.39 -0.02 0.76 16 36 H 0.12 0.77 7.94 -2.38 -0.02 0.75 16 37 H 0.40 7.84 7.45 -92.70 -0.69 7.15 16 38 H 0.14 1.11 6.73 -2.91 -0.02 1.09 16 39 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.13 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.14 1.33 8.06 -2.92 -0.02 1.30 16 42 H 0.12 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.14 5.14 5.63 -2.91 -0.02 5.13 16 Total: -1.00 -77.26 380.33 2.48 -74.78 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -1.46 Total: 29.28 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 5.47 Total: -28.32 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -3.28 Total: -87.92 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.27 Total: -30.07 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -77.26 2.48 -74.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915937262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.930 kcal (2) G-P(sol) polarization free energy of solvation -77.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds