Wall clock time and date at job start Tue Mar 31 2020 22:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99914 * 2 1 4 4 H 1.48497 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47096 * 300.00154 * 3 2 1 6 6 H 1.48499 * 109.47139 * 59.99875 * 3 2 1 7 7 C 1.37870 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00604 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47293 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.46998 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54218 * 68.37528 * 11 10 9 13 13 O 1.42096 * 110.54503 * 291.62425 * 11 10 9 14 14 N 1.65603 * 104.44806 * 179.97438 * 11 10 9 15 15 C 1.46920 * 120.62963 * 90.00165 * 14 11 10 16 16 C 1.53197 * 108.77733 * 233.58627 * 15 14 11 17 17 C 1.53046 * 109.31100 * 305.36321 * 16 15 14 18 18 N 1.46489 * 109.46110 * 181.38327 * 17 16 15 19 19 C 1.39001 * 120.00245 * 154.97660 * 18 17 16 20 20 C 1.39146 * 119.70404 * 359.97438 * 19 18 17 21 21 C 1.38295 * 119.09401 * 179.97438 * 20 19 18 22 22 C 1.38884 * 118.51011 * 0.02562 * 21 20 19 23 23 C 1.38022 * 119.32992 * 0.27628 * 22 21 20 24 24 N 1.31980 * 120.85123 * 359.44533 * 23 22 21 25 25 C 1.53049 * 109.52379 * 61.36964 * 17 16 15 26 26 C 1.46925 * 120.63242 * 269.97739 * 14 11 10 27 27 H 0.97002 * 120.00104 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46690 * 60.00107 * 9 7 2 29 29 H 1.08995 * 109.46880 * 300.00649 * 9 7 2 30 30 H 1.08992 * 109.47298 * 60.00236 * 10 9 7 31 31 H 1.09002 * 109.47093 * 299.99969 * 10 9 7 32 32 H 1.09001 * 109.58819 * 113.80018 * 15 14 11 33 33 H 1.09005 * 109.70777 * 353.44343 * 15 14 11 34 34 H 1.08993 * 109.49975 * 185.41718 * 16 15 14 35 35 H 1.08991 * 109.49580 * 65.31320 * 16 15 14 36 36 H 1.08992 * 109.46131 * 301.36253 * 17 16 15 37 37 H 0.97003 * 119.99877 * 334.97134 * 18 17 16 38 38 H 1.08000 * 120.44826 * 0.02676 * 20 19 18 39 39 H 1.08001 * 120.74270 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.33299 * 179.97438 * 22 21 20 41 41 H 1.07989 * 119.57332 * 179.70393 * 23 22 21 42 42 H 1.08995 * 109.49592 * 58.57602 * 25 17 16 43 43 H 1.09000 * 109.49282 * 178.67762 * 25 17 16 44 44 H 1.09000 * 109.58767 * 246.20759 * 26 14 11 45 45 H 1.09007 * 109.58485 * 6.48476 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 8 0.6648 -5.4193 -1.2386 13 8 0.6640 -5.4201 1.2354 14 7 2.5206 -6.3926 -0.0020 15 6 3.0550 -6.9175 1.2620 16 6 4.5807 -6.7789 1.2477 17 6 5.1392 -7.4621 -0.0028 18 7 6.6006 -7.3602 -0.0030 19 6 7.3624 -8.2952 -0.6941 20 6 6.7305 -9.3257 -1.3832 21 6 7.5006 -10.2487 -2.0670 22 6 8.8823 -10.1103 -2.0384 23 6 9.4427 -9.0672 -1.3292 24 7 8.6827 -8.1978 -0.6901 25 6 4.5802 -6.7777 -1.2524 26 6 3.0547 -6.9166 -1.2665 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6042 -0.8905 32 1 2.7846 -7.9684 1.3647 33 1 2.6445 -6.3511 2.0980 34 1 4.9973 -7.2515 2.1371 35 1 4.8499 -5.7228 1.2362 36 1 4.8483 -8.5124 -0.0033 37 1 7.0366 -6.6402 0.4791 38 1 5.6533 -9.4032 -1.3847 39 1 7.0381 -11.0594 -2.6103 40 1 9.5119 -10.8146 -2.5617 41 1 10.5167 -8.9587 -1.3004 42 1 4.8494 -5.7216 -1.2400 43 1 4.9965 -7.2494 -2.1425 44 1 2.7840 -7.9674 -1.3700 45 1 2.6417 -6.3491 -2.1006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920624360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:38 Heat of formation + Delta-G solvation = -37.753392 kcal Electronic energy + Delta-G solvation = -27283.834171 eV Core-core repulsion = 23428.040147 eV Total energy + Delta-G solvation = -3855.794025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52992 -38.90516 -36.72417 -35.71197 -35.43227 -33.92037 -32.71982 -31.62703 -31.26224 -31.18320 -29.04912 -25.64908 -24.63401 -23.94333 -23.33111 -22.33874 -21.68212 -20.48428 -18.73357 -17.90005 -17.75153 -16.96947 -16.53164 -16.01667 -15.90857 -15.53437 -15.18668 -14.77658 -14.70943 -14.61614 -14.55272 -14.37669 -13.86560 -13.46356 -13.36478 -13.25773 -12.66638 -12.64943 -12.50077 -12.02360 -11.79224 -11.70440 -11.63050 -11.58890 -11.43157 -11.22297 -11.11750 -10.99270 -10.79233 -10.42601 -10.42244 -10.39494 -9.97401 -9.81078 -9.66683 -9.38091 -8.87553 -8.53340 -7.96186 -6.15184 -4.20813 0.69389 1.05092 1.23015 2.82051 2.94145 3.23352 3.30875 3.34104 3.70471 4.24981 4.28631 4.36001 4.42571 4.43660 4.58656 4.60345 4.71971 4.85032 4.88986 4.93129 5.00038 5.08008 5.10923 5.20143 5.35936 5.41984 5.47067 5.50387 5.52497 5.58225 5.69461 5.70448 5.77644 5.81221 5.97576 6.05008 6.08371 6.33198 6.45496 6.57267 6.77793 7.26822 7.32597 7.33005 7.77938 7.95700 8.14589 8.82846 9.44268 10.95828 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.002675 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.824325 B =10465.089442 C =11709.002219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.588 4.588 11 S 2.590 3.410 12 O -0.963 6.963 13 O -0.963 6.963 14 N -1.008 6.008 15 C 0.127 3.873 16 C -0.144 4.144 17 C 0.158 3.842 18 N -0.720 5.720 19 C 0.407 3.593 20 C -0.242 4.242 21 C -0.034 4.034 22 C -0.241 4.241 23 C 0.148 3.852 24 N -0.548 5.548 25 C -0.154 4.154 26 C 0.125 3.875 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.405 0.595 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.153 0.847 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.159 -21.195 -1.639 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.689 3.311 12 O -0.953 6.953 13 O -0.954 6.954 14 N -0.844 5.844 15 C 0.001 3.999 16 C -0.184 4.184 17 C 0.053 3.947 18 N -0.351 5.351 19 C 0.171 3.829 20 C -0.267 4.267 21 C -0.060 4.060 22 C -0.264 4.264 23 C -0.010 4.010 24 N -0.266 5.266 25 C -0.194 4.194 26 C -0.001 4.001 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.241 0.759 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.170 0.830 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.223 -20.664 -1.185 25.113 hybrid contribution 0.948 0.864 -0.354 1.331 sum 15.171 -19.800 -1.539 24.991 Atomic orbital electron populations 1.69962 1.06110 1.27114 1.49635 1.25069 0.94974 0.99562 0.94901 0.86422 0.79936 0.83190 0.77793 1.19650 1.20780 1.20774 1.21030 0.93058 0.89748 1.52047 0.92042 1.18966 0.92698 0.90626 0.98834 1.30491 1.13622 1.18123 1.09933 1.05752 0.74859 0.76372 0.74100 1.93537 1.71275 1.85209 1.45326 1.93536 1.71233 1.85215 1.45379 1.58059 1.58862 1.56400 1.11042 1.21290 0.92001 1.00694 0.85917 1.22242 0.96453 1.02323 0.97381 1.20941 0.78161 1.00301 0.95328 1.44671 1.04833 1.30220 1.55335 1.18402 0.87990 0.87742 0.88783 1.21469 1.01149 0.98519 1.05542 1.21327 0.93695 0.96579 0.94403 1.21797 0.95691 1.02496 1.06425 1.22381 0.99237 0.88933 0.90416 1.67179 1.04389 1.30199 1.24827 1.22494 0.95849 1.02647 0.98421 1.21326 0.92534 1.00503 0.85726 0.92562 0.94885 0.94885 0.86344 0.86353 0.91010 0.88329 0.89957 0.90286 0.89834 0.75935 0.85016 0.85188 0.85368 0.83017 0.90481 0.90432 0.91169 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.59 -10.85 6.12 37.15 0.23 -10.62 16 11 S 2.59 44.37 5.41 -107.50 -0.58 43.78 16 12 O -0.96 -19.17 16.72 -57.54 -0.96 -20.14 16 13 O -0.96 -19.05 16.73 -57.54 -0.96 -20.02 16 14 N -1.01 -12.22 3.22 -113.52 -0.37 -12.58 16 15 C 0.13 1.25 6.31 -3.71 -0.02 1.22 16 16 C -0.14 -1.15 5.55 -26.61 -0.15 -1.29 16 17 C 0.16 1.26 2.10 -67.89 -0.14 1.12 16 18 N -0.72 -6.40 5.24 -53.89 -0.28 -6.69 16 19 C 0.41 4.14 7.63 -155.02 -1.18 2.96 16 20 C -0.24 -2.11 8.83 -39.22 -0.35 -2.45 16 21 C -0.03 -0.26 10.17 -39.32 -0.40 -0.66 16 22 C -0.24 -1.81 10.10 -39.42 -0.40 -2.21 16 23 C 0.15 1.29 11.17 -17.57 -0.20 1.10 16 24 N -0.55 -6.03 10.39 -12.44 -0.13 -6.16 16 25 C -0.15 -1.35 5.57 -26.61 -0.15 -1.50 16 26 C 0.13 1.27 6.32 -3.71 -0.02 1.25 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.12 1.95 8.14 -51.93 -0.42 1.52 16 31 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.03 7.11 -51.93 -0.37 0.66 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.61 6.45 -51.93 -0.33 0.28 16 37 H 0.40 3.55 8.73 -40.82 -0.36 3.19 16 38 H 0.13 0.97 6.10 -52.49 -0.32 0.65 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.64 7.68 -51.93 -0.40 0.24 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 1.06 7.09 -51.92 -0.37 0.70 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -35.35 377.93 -11.97 -47.32 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.76 Total: 1.80 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -3.33 Total: -23.53 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.04 Total: -51.00 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.92 Total: -40.15 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 44.37 SS G_CDS: -0.58 Total: 43.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.35 -11.97 -47.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920624360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.568 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds