Wall clock time and date at job start Tue Mar 31 2020 22:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99914 * 2 1 4 4 H 1.48497 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47096 * 300.00154 * 3 2 1 6 6 H 1.48499 * 109.47139 * 59.99875 * 3 2 1 7 7 C 1.37870 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00604 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47293 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.46998 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54218 * 68.37528 * 11 10 9 13 13 O 1.42096 * 110.54503 * 291.62425 * 11 10 9 14 14 N 1.65603 * 104.44806 * 179.97438 * 11 10 9 15 15 C 1.46920 * 120.62963 * 90.00165 * 14 11 10 16 16 C 1.53197 * 108.77733 * 233.58627 * 15 14 11 17 17 C 1.53046 * 109.31100 * 305.36321 * 16 15 14 18 18 N 1.46489 * 109.46110 * 181.38327 * 17 16 15 19 19 C 1.39001 * 120.00245 * 154.97660 * 18 17 16 20 20 C 1.39146 * 119.70404 * 359.97438 * 19 18 17 21 21 C 1.38295 * 119.09401 * 179.97438 * 20 19 18 22 22 C 1.38884 * 118.51011 * 0.02562 * 21 20 19 23 23 C 1.38022 * 119.32992 * 0.27628 * 22 21 20 24 24 N 1.31980 * 120.85123 * 359.44533 * 23 22 21 25 25 C 1.53049 * 109.52379 * 61.36964 * 17 16 15 26 26 C 1.46925 * 120.63242 * 269.97739 * 14 11 10 27 27 H 0.97002 * 120.00104 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46690 * 60.00107 * 9 7 2 29 29 H 1.08995 * 109.46880 * 300.00649 * 9 7 2 30 30 H 1.08992 * 109.47298 * 60.00236 * 10 9 7 31 31 H 1.09002 * 109.47093 * 299.99969 * 10 9 7 32 32 H 1.09001 * 109.58819 * 113.80018 * 15 14 11 33 33 H 1.09005 * 109.70777 * 353.44343 * 15 14 11 34 34 H 1.08993 * 109.49975 * 185.41718 * 16 15 14 35 35 H 1.08991 * 109.49580 * 65.31320 * 16 15 14 36 36 H 1.08992 * 109.46131 * 301.36253 * 17 16 15 37 37 H 0.97003 * 119.99877 * 334.97134 * 18 17 16 38 38 H 1.08000 * 120.44826 * 0.02676 * 20 19 18 39 39 H 1.08001 * 120.74270 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.33299 * 179.97438 * 22 21 20 41 41 H 1.07989 * 119.57332 * 179.70393 * 23 22 21 42 42 H 1.08995 * 109.49592 * 58.57602 * 25 17 16 43 43 H 1.09000 * 109.49282 * 178.67762 * 25 17 16 44 44 H 1.09000 * 109.58767 * 246.20759 * 26 14 11 45 45 H 1.09007 * 109.58485 * 6.48476 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 8 0.6648 -5.4193 -1.2386 13 8 0.6640 -5.4201 1.2354 14 7 2.5206 -6.3926 -0.0020 15 6 3.0550 -6.9175 1.2620 16 6 4.5807 -6.7789 1.2477 17 6 5.1392 -7.4621 -0.0028 18 7 6.6006 -7.3602 -0.0030 19 6 7.3624 -8.2952 -0.6941 20 6 6.7305 -9.3257 -1.3832 21 6 7.5006 -10.2487 -2.0670 22 6 8.8823 -10.1103 -2.0384 23 6 9.4427 -9.0672 -1.3292 24 7 8.6827 -8.1978 -0.6901 25 6 4.5802 -6.7777 -1.2524 26 6 3.0547 -6.9166 -1.2665 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6042 -0.8905 32 1 2.7846 -7.9684 1.3647 33 1 2.6445 -6.3511 2.0980 34 1 4.9973 -7.2515 2.1371 35 1 4.8499 -5.7228 1.2362 36 1 4.8483 -8.5124 -0.0033 37 1 7.0366 -6.6402 0.4791 38 1 5.6533 -9.4032 -1.3847 39 1 7.0381 -11.0594 -2.6103 40 1 9.5119 -10.8146 -2.5617 41 1 10.5167 -8.9587 -1.3004 42 1 4.8494 -5.7216 -1.2400 43 1 4.9965 -7.2494 -2.1425 44 1 2.7840 -7.9674 -1.3700 45 1 2.6417 -6.3491 -2.1006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920624360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:38 Heat of formation + Delta-G solvation = -62.496082 kcal Electronic energy + Delta-G solvation = -27284.907095 eV Core-core repulsion = 23428.040147 eV Total energy + Delta-G solvation = -3856.866948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15334 -39.64949 -38.22450 -37.02708 -36.37096 -35.90168 -33.33983 -33.12966 -32.34825 -32.01787 -29.70571 -27.60853 -25.39086 -24.64349 -24.05845 -23.58615 -22.87894 -21.33588 -19.89884 -19.17149 -18.52199 -18.39789 -17.57158 -17.24516 -17.04547 -16.57751 -16.48704 -15.84774 -15.74312 -15.45293 -15.38864 -15.15869 -15.07960 -14.57483 -14.48840 -14.19187 -13.79412 -13.74261 -13.57237 -13.49686 -13.18637 -12.96870 -12.89887 -12.80419 -12.79248 -12.37192 -12.27142 -12.18188 -12.12033 -12.06628 -11.75470 -11.53448 -11.14132 -11.01949 -10.67219 -10.59996 -10.29999 -9.97782 -8.58382 -8.27825 -6.41687 -0.70459 0.45144 0.63438 1.39242 1.39517 1.52799 1.73787 2.19906 2.36156 2.86586 3.05549 3.08519 3.17507 3.58587 3.77493 3.86722 3.92090 4.04468 4.05335 4.12392 4.18570 4.23348 4.29605 4.39745 4.47069 4.49734 4.68637 4.74245 4.75707 4.80023 4.81392 4.94680 4.95713 5.14411 5.19234 5.23204 5.26493 5.26681 5.31486 5.50994 5.66971 5.67104 5.77814 6.05089 6.16976 6.68047 6.72171 7.28593 7.33050 8.84531 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.002675 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.824325 B =10465.089442 C =11709.002219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.021 3.979 10 C -0.589 4.589 11 S 2.616 3.384 12 O -0.993 6.993 13 O -0.992 6.992 14 N -0.995 5.995 15 C 0.119 3.881 16 C -0.138 4.138 17 C 0.163 3.837 18 N -0.720 5.720 19 C 0.387 3.613 20 C -0.250 4.250 21 C -0.039 4.039 22 C -0.240 4.240 23 C 0.130 3.870 24 N -0.580 5.580 25 C -0.147 4.147 26 C 0.119 3.881 27 H 0.267 0.733 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.403 0.597 38 H 0.145 0.855 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.454 -22.781 -1.898 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.092 0.908 9 C -0.018 4.018 10 C -0.721 4.721 11 S 2.714 3.286 12 O -0.983 6.983 13 O -0.982 6.982 14 N -0.834 5.834 15 C -0.006 4.006 16 C -0.178 4.178 17 C 0.058 3.942 18 N -0.351 5.351 19 C 0.151 3.849 20 C -0.275 4.275 21 C -0.065 4.065 22 C -0.263 4.263 23 C -0.027 4.027 24 N -0.298 5.298 25 C -0.188 4.188 26 C -0.006 4.006 27 H 0.076 0.924 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.238 0.762 38 H 0.163 0.837 39 H 0.173 0.827 40 H 0.170 0.830 41 H 0.187 0.813 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.537 -22.246 -1.446 27.756 hybrid contribution 0.293 1.217 -0.300 1.287 sum 16.829 -21.029 -1.746 26.991 Atomic orbital electron populations 1.70103 1.08015 1.28254 1.50962 1.26103 0.95859 1.03832 0.94439 0.85286 0.79128 0.78130 0.77846 1.18053 1.20367 1.20285 1.21532 0.93873 0.90864 1.51333 0.90835 1.18808 0.93594 0.93133 0.96243 1.30411 1.12695 1.17093 1.11874 1.04661 0.75049 0.76189 0.72726 1.93491 1.72686 1.85594 1.46575 1.93492 1.72584 1.85579 1.46520 1.57651 1.58206 1.54536 1.13028 1.21580 0.93106 1.01683 0.84235 1.22190 0.94926 1.02388 0.98261 1.20920 0.77758 1.00877 0.94660 1.44658 1.04950 1.30109 1.55374 1.18663 0.88083 0.88548 0.89586 1.21686 1.01970 0.98361 1.05468 1.21719 0.93857 0.96884 0.94006 1.22113 0.96183 1.02275 1.05714 1.22808 1.00168 0.89155 0.90538 1.67159 1.05151 1.31463 1.26039 1.22435 0.94648 1.02277 0.99415 1.21571 0.93331 1.01542 0.84148 0.92377 0.97668 0.97550 0.84283 0.84567 0.88671 0.89074 0.88167 0.90724 0.88490 0.76166 0.83732 0.82672 0.83005 0.81293 0.91545 0.89574 0.88659 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.44 0.28 -56.55 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.02 1.10 4.98 29.85 0.15 1.24 16 10 C -0.59 -21.85 6.12 71.98 0.44 -21.41 16 11 S 2.62 90.00 5.41 -56.49 -0.31 89.69 16 12 O -0.99 -40.12 16.72 -127.65 -2.13 -42.26 16 13 O -0.99 -39.66 16.73 -127.65 -2.14 -41.80 16 14 N -1.00 -22.62 3.22 -513.07 -1.65 -24.27 16 15 C 0.12 2.07 6.31 86.37 0.54 2.61 16 16 C -0.14 -1.86 5.55 30.68 0.17 -1.69 16 17 C 0.16 2.19 2.10 45.03 0.09 2.28 16 18 N -0.72 -11.57 5.24 -324.42 -1.70 -13.27 16 19 C 0.39 7.26 7.63 133.07 1.02 8.27 16 20 C -0.25 -3.76 8.83 22.50 0.20 -3.56 16 21 C -0.04 -0.49 10.17 22.44 0.23 -0.26 16 22 C -0.24 -3.03 10.10 22.37 0.23 -2.81 16 23 C 0.13 2.08 11.17 84.62 0.95 3.03 16 24 N -0.58 -12.15 10.39 -193.26 -2.01 -14.16 16 25 C -0.15 -2.27 5.57 30.67 0.17 -2.10 16 26 C 0.12 2.18 6.32 86.36 0.55 2.73 16 27 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 31 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.77 7.11 -2.38 -0.02 1.75 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 1.08 6.45 -2.39 -0.02 1.06 16 37 H 0.40 6.58 8.73 -92.71 -0.81 5.77 16 38 H 0.15 1.67 6.10 -2.91 -0.02 1.65 16 39 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.17 1.83 8.06 -2.92 -0.02 1.81 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.22 7.68 -2.39 -0.02 1.20 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.09 1.79 7.09 -2.38 -0.02 1.78 16 Total: -1.00 -78.30 377.93 -2.01 -80.31 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.19 Total: 17.83 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 5.42 Total: -40.94 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -5.08 Total: -108.25 kcal Atomic # 8 Polarization: -79.79 SS G_CDS: -4.27 Total: -84.06 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 90.00 SS G_CDS: -0.31 Total: 89.69 kcal Total: -78.30 -2.01 -80.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920624360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.814 kcal (2) G-P(sol) polarization free energy of solvation -78.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds