Wall clock time and date at job start Tue Mar 31 2020 22:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00067 * 2 1 4 4 H 1.48497 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47382 * 300.00383 * 3 2 1 6 6 H 1.48500 * 109.47074 * 60.00785 * 3 2 1 7 7 C 1.37878 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00084 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47243 * 300.00732 * 9 7 2 11 11 O 1.42898 * 109.46901 * 60.00584 * 9 7 2 12 12 C 1.52998 * 109.47002 * 180.02562 * 9 7 2 13 13 N 1.46902 * 109.46873 * 177.14165 * 12 9 7 14 14 C 1.46850 * 111.00240 * 284.22017 * 13 12 9 15 15 C 1.53039 * 109.52187 * 174.16186 * 14 13 12 16 16 C 1.53117 * 109.27689 * 59.18015 * 15 14 13 17 17 C 1.50701 * 109.52018 * 182.44030 * 16 15 14 18 18 O 1.21280 * 120.00106 * 30.00067 * 17 16 15 19 19 C 1.46982 * 120.00038 * 210.00071 * 17 16 15 20 20 C 1.39948 * 120.18283 * 359.72077 * 19 17 16 21 21 C 1.37984 * 119.82122 * 179.79354 * 20 19 17 22 22 F 1.35104 * 119.89932 * 180.20984 * 21 20 19 23 23 C 1.38718 * 120.20155 * 0.48432 * 21 20 19 24 24 C 1.38207 * 120.37285 * 359.74955 * 23 21 20 25 25 C 1.38266 * 120.17128 * 0.02562 * 24 23 21 26 26 F 1.35107 * 120.09866 * 179.97438 * 25 24 23 27 27 C 1.53121 * 109.16150 * 302.34065 * 16 15 14 28 28 C 1.46850 * 110.99541 * 160.01059 * 13 12 9 29 29 H 0.97001 * 119.99608 * 359.97438 * 1 2 3 30 30 H 0.96701 * 114.00453 * 59.99894 * 11 9 7 31 31 H 1.09003 * 109.47007 * 57.14960 * 12 9 7 32 32 H 1.08997 * 109.47490 * 297.14729 * 12 9 7 33 33 H 1.08997 * 109.46044 * 54.14591 * 14 13 12 34 34 H 1.09001 * 109.45351 * 294.17176 * 14 13 12 35 35 H 1.09002 * 109.50189 * 299.23714 * 15 14 13 36 36 H 1.08999 * 109.50046 * 179.12311 * 15 14 13 37 37 H 1.09002 * 109.52728 * 62.25396 * 16 15 14 38 38 H 1.07993 * 120.08973 * 0.02562 * 20 19 17 39 39 H 1.07996 * 119.81528 * 179.72662 * 23 21 20 40 40 H 1.08000 * 119.91346 * 180.02562 * 24 23 21 41 41 H 1.09007 * 109.49955 * 177.59405 * 27 16 15 42 42 H 1.08993 * 109.50354 * 297.71656 * 27 16 15 43 43 H 1.08998 * 109.46633 * 305.85454 * 28 13 12 44 44 H 1.08997 * 109.46541 * 65.82728 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2452 -3.6621 -0.0005 13 7 1.5120 -4.9332 0.0685 14 6 1.0081 -5.1770 1.4262 15 6 0.1299 -6.4304 1.4283 16 6 0.9556 -7.6269 0.9476 17 6 0.0803 -8.8523 0.8904 18 8 -1.1053 -8.7405 0.6609 19 6 0.6635 -10.1830 1.1128 20 6 2.0322 -10.3170 1.3721 21 6 2.5710 -11.5695 1.5840 22 9 3.8914 -11.7003 1.8388 23 6 1.7622 -12.6953 1.5307 24 6 0.4104 -12.5729 1.2704 25 6 -0.1466 -11.3249 1.0603 26 9 -1.4681 -11.2070 0.8054 27 6 1.5087 -7.3276 -0.4485 28 6 2.3469 -6.0482 -0.3962 29 1 -0.4849 0.8401 0.0004 30 1 0.9210 -2.5291 -1.9984 31 1 2.9050 -3.5760 0.8628 32 1 2.8378 -3.6336 -0.9149 33 1 0.4193 -4.3204 1.7543 34 1 1.8487 -5.3213 2.1049 35 1 -0.7183 -6.2815 0.7601 36 1 -0.2312 -6.6199 2.4391 37 1 1.7817 -7.8001 1.6373 38 1 2.6642 -9.4422 1.4101 39 1 2.1913 -13.6729 1.6931 40 1 -0.2124 -13.4543 1.2309 41 1 2.1327 -8.1582 -0.7785 42 1 0.6822 -7.1929 -1.1461 43 1 2.7305 -5.8245 -1.3917 44 1 3.1811 -6.1884 0.2912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929268731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:27 Heat of formation + Delta-G solvation = -148.923281 kcal Electronic energy + Delta-G solvation = -29167.891515 eV Core-core repulsion = 24721.143664 eV Total energy + Delta-G solvation = -4446.747850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.42905 -49.31944 -40.54457 -38.83487 -38.02201 -35.58015 -33.32516 -32.09882 -31.97879 -30.71741 -30.53464 -28.40503 -26.15484 -24.75821 -23.64974 -23.17674 -22.60897 -20.80024 -20.12327 -19.42606 -18.26025 -17.74827 -17.64434 -16.99968 -16.40420 -16.02358 -15.80457 -15.52373 -15.14058 -14.91666 -14.85362 -14.64880 -14.61277 -14.47538 -14.11354 -13.68550 -13.64850 -13.48478 -13.05710 -12.93196 -12.80757 -12.50574 -12.35603 -12.04927 -11.93888 -11.48187 -11.09992 -11.00303 -10.94719 -10.77421 -10.69239 -10.57492 -10.25138 -10.01254 -9.88865 -9.67639 -9.14420 -8.98690 -8.54725 -8.10783 -7.58628 -5.97821 -4.16447 -0.09754 0.39408 1.90797 2.91150 3.27566 3.35715 3.35904 3.38607 3.54911 3.70264 3.93786 4.22787 4.28892 4.46349 4.48002 4.60774 4.77173 4.77921 5.07098 5.17010 5.21467 5.29403 5.31705 5.34978 5.43812 5.47170 5.50777 5.62469 5.68029 5.76258 5.87427 5.98393 6.11178 6.12247 6.18784 6.27658 6.40120 6.47909 6.63510 6.83420 7.22553 7.55207 7.61591 7.80524 7.92882 8.23301 8.88059 9.49843 9.66698 11.06139 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023966 B = 0.002244 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.018427 B =12475.330662 C =13257.439153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.239 3.761 10 H 0.054 0.946 11 O -0.553 6.553 12 C 0.032 3.968 13 N -0.527 5.527 14 C 0.059 3.941 15 C -0.103 4.103 16 C -0.127 4.127 17 C 0.398 3.602 18 O -0.423 6.423 19 C -0.172 4.172 20 C -0.080 4.080 21 C 0.078 3.922 22 F -0.131 7.131 23 C -0.096 4.096 24 C -0.139 4.139 25 C 0.146 3.854 26 F -0.111 7.111 27 C -0.102 4.102 28 C 0.058 3.942 29 H 0.259 0.741 30 H 0.341 0.659 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.025 0.975 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.370 -27.073 3.608 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.181 3.819 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.095 4.095 13 N -0.251 5.251 14 C -0.069 4.069 15 C -0.141 4.141 16 C -0.146 4.146 17 C 0.273 3.727 18 O -0.296 6.296 19 C -0.174 4.174 20 C -0.099 4.099 21 C 0.059 3.941 22 F -0.109 7.109 23 C -0.115 4.115 24 C -0.158 4.158 25 C 0.126 3.874 26 F -0.089 7.089 27 C -0.140 4.140 28 C -0.070 4.070 29 H 0.069 0.931 30 H 0.183 0.817 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.668 -26.908 3.638 27.399 hybrid contribution 1.888 0.807 0.290 2.073 sum 5.556 -26.101 3.927 26.973 Atomic orbital electron populations 1.70101 1.05882 1.26241 1.47051 1.25031 0.94674 0.99053 0.93931 0.86640 0.80163 0.84002 0.77684 1.19797 1.20879 1.20935 1.21700 0.93117 0.91683 1.54782 0.92771 1.19288 0.87805 0.88338 0.86508 0.92881 1.86582 1.37693 1.96291 1.14892 1.23098 0.97019 0.89809 0.99621 1.61943 1.38092 1.01947 1.23163 1.22058 0.97519 0.97896 0.89400 1.21531 0.98907 0.92219 1.01425 1.21720 0.98892 0.93867 1.00163 1.22369 0.89071 0.88562 0.72694 1.90612 1.17176 1.88353 1.33426 1.20648 0.94010 0.95300 1.07425 1.21426 0.94070 0.97478 0.96942 1.17524 0.78685 0.94039 1.03894 1.91560 1.31112 1.96636 1.91640 1.21242 0.92943 0.98916 0.98389 1.21033 0.95431 0.96692 1.02639 1.17969 0.78575 0.93336 0.97549 1.91626 1.30276 1.96699 1.90318 1.21538 1.00570 0.97477 0.94417 1.22044 0.93660 0.90906 1.00427 0.93066 0.81651 0.95313 0.92017 0.89533 0.95667 0.89540 0.91671 0.89098 0.82541 0.83151 0.82953 0.91547 0.90099 0.90565 0.95587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.49 12.84 55.43 0.71 -24.78 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.57 -15.65 8.76 -34.44 -0.30 -15.95 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.24 6.01 2.90 -27.88 -0.08 5.93 16 10 H 0.05 1.48 6.75 -51.93 -0.35 1.13 16 11 O -0.55 -14.51 12.65 -35.23 -0.45 -14.96 16 12 C 0.03 0.64 4.59 -3.82 -0.02 0.62 16 13 N -0.53 -9.19 4.50 -234.66 -1.06 -10.24 16 14 C 0.06 0.96 5.29 -3.83 -0.02 0.94 16 15 C -0.10 -1.45 5.02 -26.65 -0.13 -1.58 16 16 C -0.13 -1.45 2.03 -91.65 -0.19 -1.64 16 17 C 0.40 4.81 6.17 -30.77 -0.19 4.62 16 18 O -0.42 -6.59 15.12 5.56 0.08 -6.51 16 19 C -0.17 -1.67 5.87 -105.02 -0.62 -2.28 16 20 C -0.08 -0.61 9.34 -39.03 -0.36 -0.97 16 21 C 0.08 0.55 7.29 -39.50 -0.29 0.26 16 22 F -0.13 -1.02 17.26 2.25 0.04 -0.98 16 23 C -0.10 -0.53 10.01 -39.42 -0.39 -0.92 16 24 C -0.14 -0.87 10.01 -39.58 -0.40 -1.27 16 25 C 0.15 1.38 7.29 -38.87 -0.28 1.10 16 26 F -0.11 -1.33 15.55 2.25 0.04 -1.29 16 27 C -0.10 -1.19 5.36 -26.65 -0.14 -1.33 16 28 C 0.06 0.79 5.43 -3.83 -0.02 0.77 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 30 H 0.34 8.00 9.04 45.56 0.41 8.41 16 31 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 32 H 0.06 1.19 7.79 -51.93 -0.40 0.79 16 33 H 0.09 1.60 6.67 -51.93 -0.35 1.26 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 1.43 7.78 -51.93 -0.40 1.03 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.83 6.48 -51.93 -0.34 0.50 16 38 H 0.16 0.97 6.36 -52.49 -0.33 0.63 16 39 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 40 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 44 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -32.78 369.21 -8.71 -41.49 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.09 Total: 5.20 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -3.53 Total: -9.60 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.34 Total: -35.02 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.36 Total: -21.46 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.07 Total: -2.28 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.78 -8.71 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929268731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.429 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds