Wall clock time and date at job start Tue Mar 31 2020 22:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00067 * 2 1 4 4 H 1.48497 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47382 * 300.00383 * 3 2 1 6 6 H 1.48500 * 109.47074 * 60.00785 * 3 2 1 7 7 C 1.37878 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00084 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47243 * 300.00732 * 9 7 2 11 11 O 1.42898 * 109.46901 * 60.00584 * 9 7 2 12 12 C 1.52998 * 109.47002 * 180.02562 * 9 7 2 13 13 N 1.46902 * 109.46873 * 177.14165 * 12 9 7 14 14 C 1.46850 * 111.00240 * 284.22017 * 13 12 9 15 15 C 1.53039 * 109.52187 * 174.16186 * 14 13 12 16 16 C 1.53117 * 109.27689 * 59.18015 * 15 14 13 17 17 C 1.50701 * 109.52018 * 182.44030 * 16 15 14 18 18 O 1.21280 * 120.00106 * 30.00067 * 17 16 15 19 19 C 1.46982 * 120.00038 * 210.00071 * 17 16 15 20 20 C 1.39948 * 120.18283 * 359.72077 * 19 17 16 21 21 C 1.37984 * 119.82122 * 179.79354 * 20 19 17 22 22 F 1.35104 * 119.89932 * 180.20984 * 21 20 19 23 23 C 1.38718 * 120.20155 * 0.48432 * 21 20 19 24 24 C 1.38207 * 120.37285 * 359.74955 * 23 21 20 25 25 C 1.38266 * 120.17128 * 0.02562 * 24 23 21 26 26 F 1.35107 * 120.09866 * 179.97438 * 25 24 23 27 27 C 1.53121 * 109.16150 * 302.34065 * 16 15 14 28 28 C 1.46850 * 110.99541 * 160.01059 * 13 12 9 29 29 H 0.97001 * 119.99608 * 359.97438 * 1 2 3 30 30 H 0.96701 * 114.00453 * 59.99894 * 11 9 7 31 31 H 1.09003 * 109.47007 * 57.14960 * 12 9 7 32 32 H 1.08997 * 109.47490 * 297.14729 * 12 9 7 33 33 H 1.08997 * 109.46044 * 54.14591 * 14 13 12 34 34 H 1.09001 * 109.45351 * 294.17176 * 14 13 12 35 35 H 1.09002 * 109.50189 * 299.23714 * 15 14 13 36 36 H 1.08999 * 109.50046 * 179.12311 * 15 14 13 37 37 H 1.09002 * 109.52728 * 62.25396 * 16 15 14 38 38 H 1.07993 * 120.08973 * 0.02562 * 20 19 17 39 39 H 1.07996 * 119.81528 * 179.72662 * 23 21 20 40 40 H 1.08000 * 119.91346 * 180.02562 * 24 23 21 41 41 H 1.09007 * 109.49955 * 177.59405 * 27 16 15 42 42 H 1.08993 * 109.50354 * 297.71656 * 27 16 15 43 43 H 1.08998 * 109.46633 * 305.85454 * 28 13 12 44 44 H 1.08997 * 109.46541 * 65.82728 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2452 -3.6621 -0.0005 13 7 1.5120 -4.9332 0.0685 14 6 1.0081 -5.1770 1.4262 15 6 0.1299 -6.4304 1.4283 16 6 0.9556 -7.6269 0.9476 17 6 0.0803 -8.8523 0.8904 18 8 -1.1053 -8.7405 0.6609 19 6 0.6635 -10.1830 1.1128 20 6 2.0322 -10.3170 1.3721 21 6 2.5710 -11.5695 1.5840 22 9 3.8914 -11.7003 1.8388 23 6 1.7622 -12.6953 1.5307 24 6 0.4104 -12.5729 1.2704 25 6 -0.1466 -11.3249 1.0603 26 9 -1.4681 -11.2070 0.8054 27 6 1.5087 -7.3276 -0.4485 28 6 2.3469 -6.0482 -0.3962 29 1 -0.4849 0.8401 0.0004 30 1 0.9210 -2.5291 -1.9984 31 1 2.9050 -3.5760 0.8628 32 1 2.8378 -3.6336 -0.9149 33 1 0.4193 -4.3204 1.7543 34 1 1.8487 -5.3213 2.1049 35 1 -0.7183 -6.2815 0.7601 36 1 -0.2312 -6.6199 2.4391 37 1 1.7817 -7.8001 1.6373 38 1 2.6642 -9.4422 1.4101 39 1 2.1913 -13.6729 1.6931 40 1 -0.2124 -13.4543 1.2309 41 1 2.1327 -8.1582 -0.7785 42 1 0.6822 -7.1929 -1.1461 43 1 2.7305 -5.8245 -1.3917 44 1 3.1811 -6.1884 0.2912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929268731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:26 Heat of formation + Delta-G solvation = -171.263275 kcal Electronic energy + Delta-G solvation = -29168.860250 eV Core-core repulsion = 24721.143664 eV Total energy + Delta-G solvation = -4447.716585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.08068 -49.97322 -41.47031 -39.74530 -39.06992 -37.40455 -34.59421 -34.17532 -32.80756 -31.85032 -31.11428 -30.13362 -27.55226 -25.90711 -24.77383 -24.26096 -23.49223 -22.18605 -21.44543 -20.44502 -19.04997 -18.93309 -18.42182 -18.28787 -17.07958 -16.94464 -16.66736 -16.62190 -16.46019 -16.38897 -16.14588 -15.92693 -15.55387 -15.44683 -15.29437 -15.08873 -14.96148 -14.42009 -14.17395 -14.10045 -13.95975 -13.66403 -13.17414 -13.16198 -12.99309 -12.92558 -12.81720 -12.61558 -12.45173 -12.19419 -12.15019 -11.98463 -11.64859 -11.48649 -10.98373 -10.69634 -10.63903 -10.43938 -10.07518 -9.74606 -9.00340 -8.11253 -6.37612 -0.74360 -0.15033 1.13468 1.40275 1.41314 1.53538 2.29631 2.39209 2.59818 2.96602 3.05955 3.08414 3.15086 3.40557 3.61094 3.74900 3.80277 3.93193 3.97203 4.17384 4.26887 4.34138 4.37420 4.46663 4.47689 4.52284 4.56938 4.72317 4.73669 4.79069 4.80878 4.83325 4.88740 4.92612 4.97781 5.05707 5.12559 5.14561 5.33811 5.58972 5.62779 5.78600 6.04281 6.25687 6.34440 6.40277 6.77620 7.37080 7.66771 8.93318 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023966 B = 0.002244 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.018427 B =12475.330662 C =13257.439153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.584 4.584 8 H 0.061 0.939 9 C 0.236 3.764 10 H 0.014 0.986 11 O -0.573 6.573 12 C 0.052 3.948 13 N -0.549 5.549 14 C 0.063 3.937 15 C -0.097 4.097 16 C -0.122 4.122 17 C 0.404 3.596 18 O -0.472 6.472 19 C -0.189 4.189 20 C -0.073 4.073 21 C 0.075 3.925 22 F -0.133 7.133 23 C -0.077 4.077 24 C -0.129 4.129 25 C 0.121 3.879 26 F -0.134 7.134 27 C -0.095 4.095 28 C 0.058 3.942 29 H 0.260 0.740 30 H 0.351 0.649 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.173 0.827 39 H 0.184 0.816 40 H 0.179 0.821 41 H 0.103 0.897 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 -29.409 3.963 30.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.623 4.623 8 H 0.080 0.920 9 C 0.178 3.822 10 H 0.032 0.968 11 O -0.376 6.376 12 C -0.076 4.076 13 N -0.274 5.274 14 C -0.065 4.065 15 C -0.135 4.135 16 C -0.141 4.141 17 C 0.282 3.718 18 O -0.348 6.348 19 C -0.191 4.191 20 C -0.092 4.092 21 C 0.055 3.945 22 F -0.112 7.112 23 C -0.095 4.095 24 C -0.147 4.147 25 C 0.101 3.899 26 F -0.112 7.112 27 C -0.133 4.133 28 C -0.070 4.070 29 H 0.069 0.931 30 H 0.195 0.805 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.144 0.856 38 H 0.191 0.809 39 H 0.202 0.798 40 H 0.196 0.804 41 H 0.122 0.878 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.965 -29.266 3.992 30.347 hybrid contribution 0.890 1.422 0.198 1.689 sum 7.855 -27.844 4.190 29.233 Atomic orbital electron populations 1.70258 1.07793 1.27175 1.48686 1.25947 0.95456 1.03065 0.93526 0.85488 0.79219 0.79115 0.77584 1.18436 1.20616 1.20658 1.22108 0.93576 0.92749 1.53848 0.92032 1.19186 0.87890 0.90306 0.84798 0.96786 1.86527 1.38816 1.96486 1.15743 1.22645 0.95394 0.89414 1.00175 1.61798 1.39169 1.02341 1.24059 1.21974 0.97931 0.97282 0.89330 1.21405 0.97908 0.92836 1.01386 1.21720 0.99218 0.92331 1.00805 1.22624 0.88334 0.89847 0.71001 1.90604 1.19137 1.89037 1.36030 1.20411 0.94995 0.93925 1.09804 1.21505 0.93022 0.98594 0.96045 1.17637 0.78696 0.94310 1.03827 1.91565 1.31305 1.96629 1.91661 1.21619 0.92181 0.99988 0.95752 1.21301 0.96049 0.96138 1.01246 1.18409 0.77835 0.94771 0.98866 1.91569 1.31976 1.96903 1.90774 1.21499 1.00018 0.97884 0.93924 1.22145 0.93953 0.89851 1.01024 0.93133 0.80495 0.95031 0.90990 0.93305 0.93517 0.93025 0.90647 0.85630 0.80931 0.79821 0.80398 0.87835 0.92747 0.90086 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.27 12.84 21.45 0.28 -55.00 16 2 C 0.02 1.25 5.40 84.65 0.46 1.71 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.58 -32.20 8.76 25.60 0.22 -31.98 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.24 12.29 2.90 29.85 0.09 12.38 16 10 H 0.01 0.85 6.75 -2.39 -0.02 0.83 16 11 O -0.57 -31.20 12.65 -148.98 -1.88 -33.08 16 12 C 0.05 2.06 4.59 86.30 0.40 2.46 16 13 N -0.55 -19.15 4.50 -896.34 -4.03 -23.18 16 14 C 0.06 2.07 5.29 86.33 0.46 2.53 16 15 C -0.10 -2.83 5.02 30.65 0.15 -2.67 16 16 C -0.12 -2.63 2.03 -11.46 -0.02 -2.66 16 17 C 0.40 9.68 6.17 27.98 0.17 9.85 16 18 O -0.47 -15.51 15.12 -3.03 -0.05 -15.56 16 19 C -0.19 -3.39 5.87 -20.12 -0.12 -3.51 16 20 C -0.07 -0.87 9.34 22.62 0.21 -0.66 16 21 C 0.07 0.77 7.29 22.32 0.16 0.93 16 22 F -0.13 -1.57 17.26 44.97 0.78 -0.79 16 23 C -0.08 -0.52 10.01 22.38 0.22 -0.30 16 24 C -0.13 -1.23 10.01 22.27 0.22 -1.01 16 25 C 0.12 2.17 7.29 22.73 0.17 2.33 16 26 F -0.13 -3.28 15.55 44.97 0.70 -2.58 16 27 C -0.10 -2.07 5.36 30.65 0.16 -1.90 16 28 C 0.06 1.44 5.43 86.33 0.47 1.91 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.35 16.94 9.04 -74.06 -0.67 16.27 16 31 H 0.03 1.23 8.00 -2.39 -0.02 1.21 16 32 H 0.07 2.71 7.79 -2.39 -0.02 2.69 16 33 H 0.05 1.95 6.67 -2.39 -0.02 1.94 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.85 7.78 -2.39 -0.02 1.83 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.13 1.86 6.48 -2.39 -0.02 1.85 16 38 H 0.17 1.40 6.36 -2.91 -0.02 1.38 16 39 H 0.18 0.05 8.06 -2.91 -0.02 0.03 16 40 H 0.18 0.74 8.06 -2.91 -0.02 0.71 16 41 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.96 7.93 -2.39 -0.02 1.95 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -75.44 369.21 1.61 -73.83 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.37 Total: 21.29 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 3.43 Total: -10.60 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -3.76 Total: -78.18 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -1.93 Total: -48.64 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 1.48 Total: -3.37 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.44 1.61 -73.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929268731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.435 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds