Wall clock time and date at job start Tue Mar 31 2020 22:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47080 * 274.98391 * 3 2 1 5 5 H 1.48504 * 109.46860 * 34.97950 * 3 2 1 6 6 H 1.48495 * 109.47102 * 154.98121 * 3 2 1 7 7 C 1.38809 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00151 * 172.94611 * 7 2 1 9 9 N 1.36939 * 120.00282 * 352.94840 * 7 2 1 10 10 C 1.47579 * 134.49800 * 183.42712 * 9 7 2 11 11 C 1.53950 * 86.11879 * 155.35858 * 10 9 7 12 12 N 1.46893 * 113.73747 * 137.95397 * 11 10 9 13 13 C 1.46912 * 110.99662 * 181.92382 * 12 11 10 14 14 C 1.53237 * 109.33919 * 187.25436 * 13 12 11 15 15 N 1.47080 * 108.52169 * 306.17426 * 14 13 12 16 16 C 1.34776 * 120.88017 * 231.18799 * 15 14 13 17 17 O 1.21287 * 119.99826 * 5.70238 * 16 15 14 18 18 C 1.50696 * 120.00183 * 185.70240 * 16 15 14 19 19 H 1.09000 * 109.47370 * 16.04168 * 18 16 15 20 20 F 1.39898 * 109.47410 * 256.03650 * 18 16 15 21 21 C 1.53005 * 109.47193 * 136.03909 * 18 16 15 22 22 F 1.39898 * 109.47026 * 59.99955 * 21 18 16 23 23 F 1.39902 * 109.47022 * 180.02562 * 21 18 16 24 24 F 1.39901 * 109.47107 * 300.00122 * 21 18 16 25 25 C 1.47073 * 118.23933 * 51.45725 * 15 14 13 26 26 C 1.46897 * 111.00566 * 306.22424 * 12 11 10 27 27 C 1.47822 * 134.45327 * 3.29419 * 9 7 2 28 28 H 0.97000 * 119.99827 * 359.97438 * 1 2 3 29 29 H 1.09000 * 113.76455 * 41.05816 * 10 9 7 30 30 H 1.08998 * 113.87417 * 269.67330 * 10 9 7 31 31 H 1.08998 * 113.73957 * 269.15904 * 11 10 9 32 32 H 1.08998 * 109.48661 * 67.29841 * 13 12 11 33 33 H 1.09000 * 109.48882 * 307.21641 * 13 12 11 34 34 H 1.08997 * 109.62875 * 186.46218 * 14 13 12 35 35 H 1.09002 * 109.62903 * 65.88173 * 14 13 12 36 36 H 1.09001 * 109.63204 * 68.25372 * 25 15 14 37 37 H 1.09004 * 109.63016 * 188.83505 * 25 15 14 38 38 H 1.08998 * 109.49443 * 292.71132 * 26 12 11 39 39 H 1.09008 * 109.48668 * 52.78968 * 26 12 11 40 40 H 1.09004 * 113.76315 * 90.38015 * 27 9 7 41 41 H 1.08998 * 113.83578 * 318.92522 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2021 -0.0005 8 1 3.0841 -1.2057 -0.1154 9 7 1.3333 -2.3837 0.1445 10 6 1.7353 -3.7996 0.2518 11 6 0.4007 -4.0140 0.9886 12 7 -0.3034 -5.2407 0.5918 13 6 -1.5869 -5.3621 1.2961 14 6 -2.2031 -6.7326 0.9954 15 7 -2.2758 -6.9021 -0.4638 16 6 -3.4273 -7.2677 -1.0611 17 8 -4.4457 -7.3609 -0.4091 18 6 -3.4495 -7.5606 -2.5392 19 1 -2.4299 -7.7054 -2.8963 20 9 -4.0335 -6.4863 -3.2188 21 6 -4.2646 -8.8299 -2.7954 22 9 -5.5732 -8.6441 -2.3372 23 9 -4.2847 -9.1021 -4.1676 24 9 -3.6806 -9.9042 -2.1158 25 6 -1.0571 -6.6680 -1.2531 26 6 -0.4876 -5.2944 -0.8646 27 6 -0.0937 -2.7519 0.2589 28 1 -0.4850 0.8401 0.0004 29 1 2.6133 -3.9608 0.8773 30 1 1.7956 -4.3149 -0.7068 31 1 0.4725 -3.8960 2.0698 32 1 -2.2631 -4.5771 0.9576 33 1 -1.4235 -5.2643 2.3694 34 1 -3.2054 -6.7846 1.4205 35 1 -1.5792 -7.5167 1.4245 36 1 -0.3251 -7.4460 -1.0361 37 1 -1.3015 -6.6773 -2.3154 38 1 -1.1792 -4.5103 -1.1729 39 1 0.4731 -5.1474 -1.3583 40 1 -0.5725 -2.9572 -0.6986 41 1 -0.6733 -2.0781 0.8899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941417217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:21 Heat of formation + Delta-G solvation = -141.048879 kcal Electronic energy + Delta-G solvation = -30853.047793 eV Core-core repulsion = 25884.704623 eV Total energy + Delta-G solvation = -4968.343169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.69784 -48.80380 -48.08266 -47.90249 -40.58420 -39.07609 -36.88738 -34.11402 -32.29208 -31.66846 -30.84056 -28.24854 -26.53003 -25.04252 -24.75110 -23.86790 -22.76367 -21.62997 -20.06420 -19.45064 -19.12458 -18.75040 -18.29148 -17.77109 -16.98522 -16.75569 -16.18005 -15.57283 -15.38739 -15.07474 -15.00908 -14.94382 -14.85340 -14.80086 -14.64421 -14.47348 -14.22550 -14.16674 -14.12329 -13.84811 -13.27261 -13.12558 -12.68549 -12.40258 -12.30247 -11.99692 -11.84544 -11.75722 -11.31242 -11.14139 -10.96059 -10.80371 -10.64095 -10.34664 -10.22000 -9.97537 -9.60725 -9.11605 -8.79226 -7.98548 -6.94331 -5.84164 -3.16073 1.56236 1.87977 2.33962 2.98139 3.27996 3.34437 3.40001 3.40679 3.42269 3.51952 3.92374 4.02070 4.35184 4.42428 4.60539 4.80372 4.93543 5.09591 5.15317 5.22015 5.28366 5.41317 5.49794 5.51825 5.68753 5.84224 5.92904 5.99737 6.08988 6.21187 6.44042 6.53494 6.73241 6.93226 7.12051 7.22694 7.41679 7.43395 7.50320 7.90614 8.96884 9.64118 10.51462 11.32780 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.002599 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.569653 B =10772.791113 C =11191.982524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.225 4.225 8 H 0.081 0.919 9 N -0.608 5.608 10 C 0.125 3.875 11 C 0.035 3.965 12 N -0.529 5.529 13 C 0.041 3.959 14 C 0.118 3.882 15 N -0.592 5.592 16 C 0.497 3.503 17 O -0.500 6.500 18 C 0.032 3.968 19 H 0.149 0.851 20 F -0.151 7.151 21 C 0.448 3.552 22 F -0.155 7.155 23 F -0.168 7.168 24 F -0.167 7.167 25 C 0.101 3.899 26 C 0.033 3.967 27 C 0.132 3.868 28 H 0.254 0.746 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.102 0.898 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.029 0.971 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 -19.882 -3.565 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.352 4.352 8 H 0.098 0.902 9 N -0.335 5.335 10 C -0.001 4.001 11 C -0.073 4.073 12 N -0.253 5.253 13 C -0.088 4.088 14 C -0.004 4.004 15 N -0.325 5.325 16 C 0.279 3.721 17 O -0.374 6.374 18 C -0.009 4.009 19 H 0.166 0.834 20 F -0.131 7.131 21 C 0.393 3.607 22 F -0.136 7.136 23 F -0.150 7.150 24 F -0.149 7.149 25 C -0.022 4.022 26 C -0.095 4.095 27 C 0.005 3.995 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.046 0.954 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.559 -19.971 -3.091 20.959 hybrid contribution -0.126 1.636 -0.675 1.774 sum -5.685 -18.335 -3.767 19.562 Atomic orbital electron populations 1.69832 1.05088 1.25412 1.56340 1.24793 0.95633 0.97607 1.02237 0.86119 0.78753 0.83473 0.77524 1.21647 1.21564 1.20488 1.19005 0.90811 0.81966 1.43467 0.90155 1.45857 1.02287 0.99826 1.85504 1.22684 0.94835 0.86231 0.96381 1.24298 0.95941 0.86918 1.00144 1.62048 1.19339 1.38882 1.05049 1.22417 0.90778 0.95585 1.00039 1.21929 1.02610 0.98020 0.77825 1.48171 1.09374 1.65843 1.09127 1.19965 0.84603 0.79739 0.87791 1.90836 1.31594 1.50619 1.64397 1.22919 0.99980 0.83816 0.94144 0.83399 1.93045 1.85710 1.54556 1.79775 1.20295 0.80114 0.85377 0.74951 1.93313 1.36876 1.95011 1.88376 1.93257 1.96465 1.94454 1.30778 1.93247 1.83946 1.57808 1.79853 1.22312 0.85817 0.99354 0.94677 1.22691 1.02102 0.94565 0.90159 1.22946 0.88657 0.91399 0.96530 0.93630 0.93500 0.94580 0.87978 0.93768 0.89122 0.88470 0.89879 0.89213 0.89890 0.92954 0.88271 0.95370 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 11.42 55.49 0.63 -26.26 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.76 29.56 -169.99 -5.02 16.74 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.22 -6.15 10.69 -15.06 -0.16 -6.31 16 8 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 9 N -0.61 -14.90 3.70 -177.84 -0.66 -15.56 16 10 C 0.12 2.36 8.40 -2.96 -0.02 2.33 16 11 C 0.04 0.61 4.05 -69.91 -0.28 0.32 16 12 N -0.53 -7.08 4.77 -227.93 -1.09 -8.17 16 13 C 0.04 0.49 5.55 -3.69 -0.02 0.47 16 14 C 0.12 1.23 6.61 -3.60 -0.02 1.21 16 15 N -0.59 -6.28 3.00 -172.19 -0.52 -6.80 16 16 C 0.50 5.90 6.78 -10.99 -0.07 5.82 16 17 O -0.50 -7.56 15.03 5.55 0.08 -7.47 16 18 C 0.03 0.31 3.19 -27.88 -0.09 0.22 16 19 H 0.15 0.81 5.77 -51.93 -0.30 0.51 16 20 F -0.15 -1.71 17.03 2.25 0.04 -1.67 16 21 C 0.45 4.53 2.86 37.16 0.11 4.63 16 22 F -0.15 -1.94 15.94 2.25 0.04 -1.90 16 23 F -0.17 -1.60 17.30 2.25 0.04 -1.56 16 24 F -0.17 -1.63 17.02 2.25 0.04 -1.59 16 25 C 0.10 0.89 6.34 -3.37 -0.02 0.87 16 26 C 0.03 0.42 4.65 -3.46 -0.02 0.40 16 27 C 0.13 2.91 6.82 -2.83 -0.02 2.89 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.64 5.93 -51.93 -0.31 0.33 16 31 H 0.10 1.75 8.11 -51.93 -0.42 1.33 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.10 1.07 7.04 -51.93 -0.37 0.70 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.54 5.56 -51.93 -0.29 0.25 16 38 H 0.05 0.78 6.38 -51.93 -0.33 0.45 16 39 H 0.10 1.26 5.81 -51.92 -0.30 0.96 16 40 H 0.03 0.65 5.76 -51.93 -0.30 0.35 16 41 H 0.07 1.75 7.18 -51.93 -0.37 1.37 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -32.38 341.90 -6.63 -39.02 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.65 Total: -2.52 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -0.72 Total: 12.61 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -1.63 Total: -56.78 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.08 Total: -7.47 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.15 Total: -6.73 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.38 -6.63 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941417217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.030 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds