Wall clock time and date at job start Tue Mar 31 2020 22:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47080 * 274.98391 * 3 2 1 5 5 H 1.48504 * 109.46860 * 34.97950 * 3 2 1 6 6 H 1.48495 * 109.47102 * 154.98121 * 3 2 1 7 7 C 1.38809 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00151 * 172.94611 * 7 2 1 9 9 N 1.36939 * 120.00282 * 352.94840 * 7 2 1 10 10 C 1.47579 * 134.49800 * 183.42712 * 9 7 2 11 11 C 1.53950 * 86.11879 * 155.35858 * 10 9 7 12 12 N 1.46893 * 113.73747 * 137.95397 * 11 10 9 13 13 C 1.46912 * 110.99662 * 181.92382 * 12 11 10 14 14 C 1.53237 * 109.33919 * 187.25436 * 13 12 11 15 15 N 1.47080 * 108.52169 * 306.17426 * 14 13 12 16 16 C 1.34776 * 120.88017 * 231.18799 * 15 14 13 17 17 O 1.21287 * 119.99826 * 5.70238 * 16 15 14 18 18 C 1.50696 * 120.00183 * 185.70240 * 16 15 14 19 19 H 1.09000 * 109.47370 * 16.04168 * 18 16 15 20 20 F 1.39898 * 109.47410 * 256.03650 * 18 16 15 21 21 C 1.53005 * 109.47193 * 136.03909 * 18 16 15 22 22 F 1.39898 * 109.47026 * 59.99955 * 21 18 16 23 23 F 1.39902 * 109.47022 * 180.02562 * 21 18 16 24 24 F 1.39901 * 109.47107 * 300.00122 * 21 18 16 25 25 C 1.47073 * 118.23933 * 51.45725 * 15 14 13 26 26 C 1.46897 * 111.00566 * 306.22424 * 12 11 10 27 27 C 1.47822 * 134.45327 * 3.29419 * 9 7 2 28 28 H 0.97000 * 119.99827 * 359.97438 * 1 2 3 29 29 H 1.09000 * 113.76455 * 41.05816 * 10 9 7 30 30 H 1.08998 * 113.87417 * 269.67330 * 10 9 7 31 31 H 1.08998 * 113.73957 * 269.15904 * 11 10 9 32 32 H 1.08998 * 109.48661 * 67.29841 * 13 12 11 33 33 H 1.09000 * 109.48882 * 307.21641 * 13 12 11 34 34 H 1.08997 * 109.62875 * 186.46218 * 14 13 12 35 35 H 1.09002 * 109.62903 * 65.88173 * 14 13 12 36 36 H 1.09001 * 109.63204 * 68.25372 * 25 15 14 37 37 H 1.09004 * 109.63016 * 188.83505 * 25 15 14 38 38 H 1.08998 * 109.49443 * 292.71132 * 26 12 11 39 39 H 1.09008 * 109.48668 * 52.78968 * 26 12 11 40 40 H 1.09004 * 113.76315 * 90.38015 * 27 9 7 41 41 H 1.08998 * 113.83578 * 318.92522 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2021 -0.0005 8 1 3.0841 -1.2057 -0.1154 9 7 1.3333 -2.3837 0.1445 10 6 1.7353 -3.7996 0.2518 11 6 0.4007 -4.0140 0.9886 12 7 -0.3034 -5.2407 0.5918 13 6 -1.5869 -5.3621 1.2961 14 6 -2.2031 -6.7326 0.9954 15 7 -2.2758 -6.9021 -0.4638 16 6 -3.4273 -7.2677 -1.0611 17 8 -4.4457 -7.3609 -0.4091 18 6 -3.4495 -7.5606 -2.5392 19 1 -2.4299 -7.7054 -2.8963 20 9 -4.0335 -6.4863 -3.2188 21 6 -4.2646 -8.8299 -2.7954 22 9 -5.5732 -8.6441 -2.3372 23 9 -4.2847 -9.1021 -4.1676 24 9 -3.6806 -9.9042 -2.1158 25 6 -1.0571 -6.6680 -1.2531 26 6 -0.4876 -5.2944 -0.8646 27 6 -0.0937 -2.7519 0.2589 28 1 -0.4850 0.8401 0.0004 29 1 2.6133 -3.9608 0.8773 30 1 1.7956 -4.3149 -0.7068 31 1 0.4725 -3.8960 2.0698 32 1 -2.2631 -4.5771 0.9576 33 1 -1.4235 -5.2643 2.3694 34 1 -3.2054 -6.7846 1.4205 35 1 -1.5792 -7.5167 1.4245 36 1 -0.3251 -7.4460 -1.0361 37 1 -1.3015 -6.6773 -2.3154 38 1 -1.1792 -4.5103 -1.1729 39 1 0.4731 -5.1474 -1.3583 40 1 -0.5725 -2.9572 -0.6986 41 1 -0.6733 -2.0781 0.8899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941417217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:20 Heat of formation + Delta-G solvation = -163.687362 kcal Electronic energy + Delta-G solvation = -30854.029471 eV Core-core repulsion = 25884.704623 eV Total energy + Delta-G solvation = -4969.324848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.49198 -49.61756 -48.87038 -48.73163 -41.58045 -40.39367 -38.10925 -35.39402 -33.93322 -32.80535 -31.70997 -29.77687 -27.92868 -26.64517 -25.72571 -24.87250 -24.30309 -22.73274 -21.08524 -20.42731 -20.02213 -19.71087 -19.26381 -18.76925 -18.63556 -17.73489 -17.21054 -16.92840 -16.67984 -16.34807 -16.17284 -15.85385 -15.69133 -15.63363 -15.59967 -15.58888 -15.27222 -15.25272 -14.98109 -14.95456 -14.47153 -14.04282 -13.90525 -13.87175 -13.48386 -13.43131 -13.20466 -12.91310 -12.71207 -12.64444 -12.28720 -12.24403 -12.10508 -11.86424 -11.75755 -11.41063 -11.21403 -10.80170 -10.02947 -9.29722 -8.86722 -7.92863 -5.25229 0.72505 1.02907 1.44415 1.45750 1.52164 1.55298 2.20572 2.42655 2.50189 2.63045 2.79981 2.85859 3.25646 3.28928 3.47247 3.58678 3.76199 3.82984 3.93117 4.10071 4.21599 4.34920 4.40259 4.44588 4.62352 4.67358 4.75763 4.86786 4.95714 5.00530 5.06321 5.18582 5.23008 5.36365 5.49303 5.88399 5.90948 6.06799 6.12434 6.53835 6.89239 7.59766 8.54536 9.23583 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.002599 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.569653 B =10772.791113 C =11191.982524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.231 4.231 8 H 0.087 0.913 9 N -0.640 5.640 10 C 0.129 3.871 11 C 0.066 3.934 12 N -0.512 5.512 13 C 0.042 3.958 14 C 0.123 3.877 15 N -0.590 5.590 16 C 0.492 3.508 17 O -0.540 6.540 18 C 0.035 3.965 19 H 0.195 0.805 20 F -0.162 7.162 21 C 0.449 3.551 22 F -0.174 7.174 23 F -0.164 7.164 24 F -0.164 7.164 25 C 0.105 3.895 26 C 0.030 3.970 27 C 0.130 3.870 28 H 0.246 0.754 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.015 0.985 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.022 0.978 39 H 0.101 0.899 40 H 0.019 0.981 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 -21.970 -4.014 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.360 4.360 8 H 0.104 0.896 9 N -0.367 5.367 10 C 0.004 3.996 11 C -0.043 4.043 12 N -0.235 5.235 13 C -0.087 4.087 14 C 0.002 3.998 15 N -0.323 5.323 16 C 0.275 3.725 17 O -0.417 6.417 18 C -0.005 4.005 19 H 0.212 0.788 20 F -0.143 7.143 21 C 0.394 3.606 22 F -0.155 7.155 23 F -0.145 7.145 24 F -0.145 7.145 25 C -0.016 4.016 26 C -0.098 4.098 27 C 0.003 3.997 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.034 0.966 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.040 0.960 39 H 0.119 0.881 40 H 0.037 0.963 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.678 -22.107 -3.549 22.691 hybrid contribution -0.689 2.225 -0.546 2.393 sum -4.368 -19.882 -4.096 20.764 Atomic orbital electron populations 1.70037 1.06600 1.25451 1.58357 1.25624 0.96435 1.00959 1.03085 0.85090 0.77975 0.79228 0.77230 1.21537 1.22336 1.18899 1.19431 0.91430 0.83405 1.41685 0.89560 1.46250 1.03529 1.01400 1.85548 1.22853 0.95897 0.83134 0.97679 1.23819 0.94801 0.86148 0.99528 1.62110 1.19755 1.35648 1.05989 1.22470 0.89536 0.96038 1.00645 1.21899 1.02534 0.97275 0.78141 1.48297 1.09670 1.64943 1.09356 1.20353 0.84210 0.79210 0.88683 1.90821 1.32940 1.52393 1.65566 1.23110 1.01991 0.82869 0.92513 0.78816 1.93023 1.86181 1.55236 1.79824 1.20370 0.79437 0.85785 0.75054 1.93277 1.38401 1.95147 1.88659 1.93268 1.96393 1.94448 1.30367 1.93253 1.83724 1.57691 1.79818 1.22486 0.85495 0.97634 0.96023 1.22744 1.01726 0.96194 0.89168 1.22870 0.87496 0.93239 0.96073 0.94506 0.92215 0.92389 0.87743 0.96614 0.87822 0.89171 0.87288 0.86021 0.87027 0.96017 0.88063 0.96325 0.95574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.86 11.42 21.65 0.25 -57.61 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 3 Si 0.98 45.33 29.56 68.60 2.03 47.36 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.23 -12.66 10.69 84.03 0.90 -11.77 16 8 H 0.09 4.49 7.84 -2.91 -0.02 4.46 16 9 N -0.64 -31.45 3.70 -716.56 -2.65 -34.10 16 10 C 0.13 4.63 8.40 86.49 0.73 5.36 16 11 C 0.07 2.21 4.05 46.67 0.19 2.40 16 12 N -0.51 -12.68 4.77 -875.02 -4.17 -16.85 16 13 C 0.04 0.97 5.55 86.38 0.48 1.45 16 14 C 0.12 2.32 6.61 86.35 0.57 2.89 16 15 N -0.59 -11.03 3.00 -817.06 -2.45 -13.48 16 16 C 0.49 10.84 6.78 87.66 0.59 11.43 16 17 O -0.54 -16.10 15.03 -3.05 -0.05 -16.15 16 18 C 0.04 0.59 3.19 29.85 0.10 0.68 16 19 H 0.20 1.27 5.77 -2.39 -0.01 1.26 16 20 F -0.16 -3.45 17.03 44.97 0.77 -2.68 16 21 C 0.45 8.28 2.86 71.98 0.21 8.49 16 22 F -0.17 -4.28 15.94 44.97 0.72 -3.56 16 23 F -0.16 -2.78 17.30 44.97 0.78 -2.01 16 24 F -0.16 -2.83 17.02 44.97 0.77 -2.07 16 25 C 0.10 1.44 6.34 86.50 0.55 1.99 16 26 C 0.03 0.69 4.65 86.54 0.40 1.09 16 27 C 0.13 5.94 6.82 86.44 0.59 6.53 16 28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.88 5.93 -2.39 -0.01 1.86 16 31 H 0.10 3.47 8.11 -2.39 -0.02 3.45 16 32 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.10 2.14 8.08 -2.39 -0.02 2.12 16 34 H 0.09 1.89 7.04 -2.39 -0.02 1.88 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.11 0.92 5.56 -2.39 -0.01 0.91 16 38 H 0.02 0.64 6.38 -2.39 -0.02 0.62 16 39 H 0.10 2.29 5.81 -2.38 -0.01 2.27 16 40 H 0.02 0.90 5.76 -2.39 -0.01 0.88 16 41 H 0.03 1.39 7.18 -2.39 -0.02 1.38 16 Total: -1.00 -73.46 341.90 2.84 -70.62 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.09 Total: 3.39 kcal Atomic # 6 Polarization: 21.37 SS G_CDS: 5.77 Total: 27.14 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -9.03 Total: -122.04 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.05 Total: -16.15 kcal Atomic # 9 Polarization: -13.35 SS G_CDS: 3.03 Total: -10.32 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -73.46 2.84 -70.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941417217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.065 kcal (2) G-P(sol) polarization free energy of solvation -73.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds