Wall clock time and date at job start Tue Mar 31 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47008 * 274.99333 * 3 2 1 5 5 H 1.48497 * 109.47223 * 34.99238 * 3 2 1 6 6 H 1.48495 * 109.47180 * 154.99346 * 3 2 1 7 7 C 1.38815 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00003 * 174.85729 * 7 2 1 9 9 N 1.36934 * 119.99796 * 354.86255 * 7 2 1 10 10 C 1.47575 * 134.49424 * 184.88999 * 9 7 2 11 11 C 1.53947 * 86.12114 * 155.35899 * 10 9 7 12 12 N 1.46897 * 113.74504 * 137.95480 * 11 10 9 13 13 C 1.46899 * 111.00155 * 181.92605 * 12 11 10 14 14 C 1.53236 * 109.33921 * 187.25210 * 13 12 11 15 15 N 1.47080 * 108.52068 * 306.17067 * 14 13 12 16 16 C 1.34780 * 120.87882 * 231.18809 * 15 14 13 17 17 O 1.21282 * 120.00042 * 184.43533 * 16 15 14 18 18 C 1.50702 * 120.00260 * 4.15933 * 16 15 14 19 19 H 1.09003 * 109.46559 * 343.93561 * 18 16 15 20 20 F 1.39891 * 109.47127 * 103.93645 * 18 16 15 21 21 C 1.53004 * 109.47092 * 223.94070 * 18 16 15 22 22 F 1.39896 * 109.46954 * 59.99685 * 21 18 16 23 23 F 1.39902 * 109.46849 * 179.97438 * 21 18 16 24 24 F 1.39900 * 109.46924 * 299.99989 * 21 18 16 25 25 C 1.47071 * 118.24092 * 51.45964 * 15 14 13 26 26 C 1.46900 * 110.99819 * 306.22963 * 12 11 10 27 27 C 1.47813 * 134.45591 * 4.75759 * 9 7 2 28 28 H 0.96998 * 119.99779 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.76723 * 41.05945 * 10 9 7 30 30 H 1.09001 * 113.87345 * 269.67607 * 10 9 7 31 31 H 1.09001 * 113.73884 * 269.15772 * 11 10 9 32 32 H 1.09006 * 109.49160 * 67.29554 * 13 12 11 33 33 H 1.08995 * 109.49117 * 307.21249 * 13 12 11 34 34 H 1.08999 * 109.62974 * 186.46320 * 14 13 12 35 35 H 1.08998 * 109.62823 * 65.87910 * 14 13 12 36 36 H 1.09004 * 109.62916 * 68.24870 * 25 15 14 37 37 H 1.08995 * 109.63365 * 188.83383 * 25 15 14 38 38 H 1.09001 * 109.48978 * 292.70411 * 26 12 11 39 39 H 1.09000 * 109.49693 * 52.78537 * 26 12 11 40 40 H 1.08998 * 113.77135 * 90.38373 * 27 9 7 41 41 H 1.09005 * 113.83929 * 318.91708 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5918 7 6 2.0103 -1.2022 0.0005 8 1 3.0870 -1.2041 -0.0833 9 7 1.3297 -2.3856 0.1073 10 6 1.7292 -3.8009 0.2305 11 6 0.3593 -4.0208 0.8977 12 7 -0.3208 -5.2478 0.4618 13 6 -1.6381 -5.3744 1.0994 14 6 -2.2348 -6.7453 0.7634 15 7 -2.2327 -6.9102 -0.6981 16 6 -3.3515 -7.2765 -1.3544 17 8 -3.3130 -7.4861 -2.5484 18 6 -4.6490 -7.4316 -0.6037 19 1 -4.4452 -7.4913 0.4654 20 9 -5.4712 -6.3295 -0.8610 21 6 -5.3529 -8.7109 -1.0609 22 9 -4.5305 -9.8130 -0.8036 23 9 -6.5571 -8.8552 -0.3635 24 9 -5.6143 -8.6344 -2.4331 25 6 -0.9760 -6.6709 -1.4237 26 6 -0.4303 -5.2972 -1.0022 27 6 -0.1003 -2.7574 0.1476 28 1 -0.4850 0.8400 -0.0004 29 1 2.5745 -3.9621 0.8994 30 1 1.8396 -4.3130 -0.7254 31 1 0.3756 -3.9061 1.9815 32 1 -2.2982 -4.5898 0.7293 33 1 -1.5299 -5.2797 2.1798 34 1 -3.2574 -6.8010 1.1367 35 1 -1.6316 -7.5293 1.2212 36 1 -0.2542 -7.4479 -1.1720 37 1 -1.1659 -6.6773 -2.4969 38 1 -1.1072 -4.5137 -1.3429 39 1 0.5538 -5.1465 -1.4460 40 1 -0.5293 -2.9608 -0.8335 41 1 -0.7130 -2.0871 0.7505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941417218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:25 Heat of formation + Delta-G solvation = -139.332937 kcal Electronic energy + Delta-G solvation = -30823.300452 eV Core-core repulsion = 25855.031691 eV Total energy + Delta-G solvation = -4968.268761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.70675 -48.81603 -48.09245 -47.90965 -40.58992 -39.06620 -36.91928 -34.07780 -32.17954 -31.91004 -30.74931 -28.25181 -26.48787 -25.06823 -24.91010 -23.62528 -22.84537 -21.65661 -20.10474 -19.50722 -19.09613 -18.62286 -18.38951 -17.80570 -16.90756 -16.85723 -16.07818 -15.61124 -15.52865 -15.04892 -15.01279 -14.92286 -14.83768 -14.76601 -14.60216 -14.48210 -14.28570 -14.17388 -14.13064 -13.86932 -13.24384 -13.18098 -12.82923 -12.40653 -12.15891 -11.95786 -11.87899 -11.69303 -11.39380 -11.07167 -10.94635 -10.78973 -10.71693 -10.31674 -10.19770 -9.95904 -9.60730 -9.11832 -8.79608 -7.98620 -6.92684 -5.83102 -3.15857 1.56927 1.86408 2.33847 2.97364 3.26019 3.34981 3.38134 3.40304 3.42469 3.48596 3.90524 4.01696 4.33726 4.42669 4.57810 4.78300 4.92569 5.06592 5.16131 5.24894 5.28835 5.42335 5.49108 5.55386 5.69820 5.78974 5.89442 6.02019 6.10313 6.24609 6.45820 6.54487 6.74578 6.92718 7.13506 7.22861 7.42142 7.44222 7.51168 7.91717 8.97724 9.64761 10.52318 11.33455 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.002524 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.773545 B =11092.563276 C =11449.215647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.608 5.608 10 C 0.125 3.875 11 C 0.036 3.964 12 N -0.529 5.529 13 C 0.040 3.960 14 C 0.101 3.899 15 N -0.591 5.591 16 C 0.495 3.505 17 O -0.499 6.499 18 C 0.031 3.969 19 H 0.149 0.851 20 F -0.150 7.150 21 C 0.448 3.552 22 F -0.167 7.167 23 F -0.169 7.169 24 F -0.154 7.154 25 C 0.118 3.882 26 C 0.033 3.967 27 C 0.129 3.871 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.102 0.898 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.028 0.972 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 -19.407 3.183 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.335 5.335 10 C -0.002 4.002 11 C -0.073 4.073 12 N -0.253 5.253 13 C -0.089 4.089 14 C -0.021 4.021 15 N -0.325 5.325 16 C 0.278 3.722 17 O -0.373 6.373 18 C -0.010 4.010 19 H 0.167 0.833 20 F -0.130 7.130 21 C 0.392 3.608 22 F -0.149 7.149 23 F -0.150 7.150 24 F -0.136 7.136 25 C -0.003 4.003 26 C -0.095 4.095 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.045 0.955 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.146 -19.558 2.651 21.753 hybrid contribution -0.312 1.641 -0.336 1.704 sum -9.458 -17.916 2.315 20.391 Atomic orbital electron populations 1.69822 1.05080 1.25357 1.56483 1.24801 0.95652 0.97596 1.02255 0.86106 0.78723 0.83437 0.77530 1.21654 1.21573 1.20487 1.19011 0.90568 0.81892 1.43671 0.90186 1.45829 1.02149 0.99791 1.85703 1.22689 0.94557 0.86204 0.96702 1.24300 0.96123 0.86873 0.99977 1.62047 1.18091 1.38897 1.06293 1.22387 0.90965 0.94957 1.00624 1.22202 1.01454 0.99593 0.78878 1.48179 1.09781 1.65910 1.08597 1.19958 0.84509 0.79777 0.87974 1.90842 1.84478 1.48268 1.13730 1.22948 0.89606 0.83034 1.05392 0.83349 1.93040 1.72008 1.52191 1.95803 1.20313 0.77968 0.85596 0.76922 1.93246 1.71984 1.55763 1.93858 1.93255 1.46713 1.96145 1.78882 1.93316 1.93924 1.96204 1.30111 1.22067 0.83028 0.97736 0.97518 1.22737 1.02403 0.95173 0.89183 1.22985 0.88842 0.91383 0.96550 0.93657 0.93510 0.94508 0.87991 0.93637 0.88997 0.89923 0.89095 0.89896 0.88496 0.93112 0.88367 0.95452 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 11.36 55.49 0.63 -26.28 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.86 29.56 -169.99 -5.02 16.83 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.04 3.70 -177.85 -0.66 -15.69 16 10 C 0.12 2.40 8.40 -2.97 -0.02 2.37 16 11 C 0.04 0.61 4.05 -69.91 -0.28 0.33 16 12 N -0.53 -7.04 4.77 -227.93 -1.09 -8.13 16 13 C 0.04 0.43 5.55 -3.70 -0.02 0.41 16 14 C 0.10 0.80 6.47 -3.60 -0.02 0.78 16 15 N -0.59 -6.28 3.00 -172.19 -0.52 -6.79 16 16 C 0.50 5.89 6.79 -10.98 -0.07 5.81 16 17 O -0.50 -7.65 15.04 5.56 0.08 -7.57 16 18 C 0.03 0.29 3.39 -27.88 -0.09 0.19 16 19 H 0.15 0.75 5.41 -51.93 -0.28 0.47 16 20 F -0.15 -1.66 17.03 2.25 0.04 -1.63 16 21 C 0.45 4.45 2.85 37.16 0.11 4.56 16 22 F -0.17 -1.61 17.02 2.25 0.04 -1.57 16 23 F -0.17 -1.56 17.30 2.25 0.04 -1.52 16 24 F -0.15 -1.94 15.94 2.25 0.04 -1.90 16 25 C 0.12 1.34 6.61 -3.37 -0.02 1.31 16 26 C 0.03 0.45 4.65 -3.46 -0.02 0.44 16 27 C 0.13 2.87 6.88 -2.84 -0.02 2.85 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.68 5.93 -51.93 -0.31 0.37 16 31 H 0.10 1.72 8.11 -51.93 -0.42 1.30 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.08 0.42 5.25 -51.93 -0.27 0.15 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.18 7.09 -51.93 -0.37 0.81 16 38 H 0.05 0.81 6.38 -51.93 -0.33 0.48 16 39 H 0.10 1.40 5.81 -51.93 -0.30 1.09 16 40 H 0.03 0.64 5.76 -51.93 -0.30 0.34 16 41 H 0.07 1.81 7.07 -51.93 -0.37 1.44 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -32.63 341.48 -6.61 -39.24 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.61 Total: -2.58 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -0.73 Total: 12.45 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -1.63 Total: -56.90 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.08 Total: -7.57 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.15 Total: -6.62 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.63 -6.61 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941417218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.090 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds